Abstract
Proton transfer is one of the most elementary chemical reactions and plays important roles in polar solvents, organic reactions, and biological systems (Bountis 1991). Proton transfer dynamics have been extensively studied, and it has been shown that proton transfer cannot be well described by a one-dimensional potential along the reaction coordinate in many polyatomic molecules. When a potential barrier exists along the reaction coordinate the mechanism of proton transfer below the barrier is quantum mechanical tunneling. Since the whole atoms that constitute the molecule participate in the process, tunneling in polyatomic molecules exhibits a multi-dimensional nature. Due to the multi-dimensionality of tunneling, our understanding of proton tunneling in large molecules and complexes is still incomplete. However, various laser spectroscopic techniques combined with the molecular beam technique enable us to obtain fruitful data for the determination of the tunneling PESs (potential energy surfaces) in the electronic excited state as well as in the electronic ground state of the isolated molecules. These data are available to construct new models of tunneling. In this chapter, various molecules and complexes that show multi-dimensional tunneling are described. In particular, we focus on vibrational mode-selective tunneling in tropolone, 9-hydroxyphenalenone, and their derivatives. In Sect. 10.2 basic spectroscopic techniques for investigation of proton transfer reactions in the isolate state are described. The multi-dimensional nature of tunneling in several molecules is discussed in Sect. 10.3.1 on the basis of various experimental data together with theoretical calculations on the molecular structure. The effects of the intermolecular interaction on proton tunneling will be discussed in Sect. 10.3.2 with calculated two-dimensional PESs for the 9-hydroxyphenalenone-CO2/H2O complexes. The doubly hydrogen-bonded 7-azaindole dimer has been of considerable interest in double proton transfer as a model base pair. Recent experimental results of doubly hydrogen-bonded dimers are described in Sect. 10.3.2. The conclusion and future developments are described in Sect. 10.4.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Alves, A.C.P., Hollas, J.M. (1973): Mol. Phys. 25, 1305
Alves, A.C.P., Hollas, J.M., Musa, H., Ridley, T. (1985): J. Mol. Spectrosc. 109, 99
Baba, T., Tanaka, T., Morino, I., Yamada, K.M.T., Tanaka, K. (1999): J. Chem. Phys. 110, 4131
Barabara, P.F., Walsh, P.K., Brus, L.E. (1989): J. Phys. Chem. 93, 29
Baughcum, S.L., Duerst, R.W., Rowe, W.F., Smith, Z., Wilson, E.B. (1981): J. Am. Chem. Soc. 103, 6296
Baughcum, S.L., Smith, Z., Wilson, E.B., Duerst, R. (1984): J. Am. Chem. Soc. 106, 2260
Benderskii, V.A., Vetoshkin, E.V., Irgibaeva, I.S., Trommsdorff, H.P. (2000): Chem. Phys. 262, 393
Bondybey, V.E., Haddon, R.C., Brus, L.E. (1984): J. Chem. Phys. 80, 5432
Bountis, T. ed. (1991): Proton Transfer in Hydrogen-Bonded Systems, Plenum Press, New York and London
Carrington, T., Miller, W.H. (1986): J. Chem. Phys. 84, 4369
Catalan, J., del Valle, J.C., Kasha, M. (1999): Proc. Natl. Acad. Sci. USA 96, 8318
Catalan, J., del Valle, J.C., Kasha, M. (2000): Chem. Phys. Lett. 318, 629
Chaban, G.M., Gordon M.S. (1999): J. Phys. Chem. A 103, 185
Douhal, A., Lahmani, F., Zehnacker-Rentien, A. (1993): Chem. Phys. 178, 493
Douhal, A., Kim, S.K., Zewail, A.H. (1995): Nature 378, 260
Ensminger, F.A., Plassard, J., Zwier, T.S. (1993): J. Phys. Chem. 97, 4344
Ensminger, F.A., Plassard, J., Zwier. T.S., Hardinger, S. (1995): J. Chem. Phys. 102, 5246
Felker, P.M., Lambert, W.R., Zewail, A.H. (1982): J. Chem. Phys. 77, 1603
Fernandez-Ramos, A., Smedarchina, Z., Zgierski, M.Z., Siebrand, W. (1998): J. Chem. Phys. 109, 1004
Fernandez-Ramos, A., Smedarchina, M.Z., Siebrand, W., Zgierski, M.Z. (2001): J. Chem. Phys. 114, 7518
Fiebig, T., Chachisvilis, M., Manger, M., Zewail., A.H., Douhal, A., Garcia-Ochoal, I, Syuso, A.D.H. (1999): J. Phys. Chem. A 103, 7419
Folmer, D.E., Poth, L., Wisniewski, E.S., Castleman, A.W. (1998): Chem. Phys. Lett. 287, 1
Folmer, D.E., Wisniewski, E.S., Castleman, A.W. (2000a): Chem. Phys. Lett. 318, 637
Folmer, D.E., Wisniewski, E.S., Stairs, J.R., Castleman, A.W. (2000b): J. Phys. Chem. A 104, 10545
Frost, R.K., Hagemeister, F.C., Arrington, C.A., Zwier, T.S., Jordan, K.D. (1996a): J. Chem. Phys. 105, 2595
Frost, R.K., Hagemeister, F., Schleppenbach. D., Laurence, G., Zwier, T.S. (1996b): J. Phys. Chem. 100, 16835
Frost, R.K., Hagemeister, F.C., Arrington, C.A., Schleppenbach, D., Zwier, T.S., Jordan K. D. (1996c): J. Chem. Phys. 105, 2605
Fuke, K., Kaya, K. (1984): J. Phys. Chem. 88, 5840
Fuke, K., Kaya, K. (1989): J. Phys. Chem. 93, 614
Fukuchi, T., Nishi, K., Shiraishi, S., Nishi, N., Sekiya, H. (1998): Jpn. J. Deuterium Sci. 7, 15
Furusawa, J., Mori, H., Sekiya, H. (2002): Bull. Polish Aca. Sci. 50, 451
Gregoire, G., Dedonder-Lardeux, C., Jouvet, C., Martrenchard, S., Solgadi, D. (2001): J. Phys. Chem. 105, 5971
Guo, Y., Sewell, T.D., Thompson, D.L. (1998): J. Phys. Chem. A 102, 5046
Hamabe, H., Sekiya, H., Nakano, N., Nishi, K., Nishimura, Y. (1997): Chem. Phys. Lett. 280, 390
Hamabe, H., Fukuchi, T., Shiraishi, S., Nishi, K., Nishimura, Y., Tsuji, T., Nishi, N., Sekiya, H. (1998): J. Phys. Chem. 102, 3880
Hineman, M.F., Brucker, G.A., Kelley, D.F., Bernstein, E.E. (1992): J. Chem. Phys. 97, 3341
Ikoma, T., Akiyama, K., Tero-Kubota, S., Ikegami, Y. (1999): J. Chem. Phys. 111, 6875
Ingham, K.C., El-Bayoumi, M.A. (1974): J. Am. Chem. Soc. 96, 1674
Ishiuchi, S., Sakai, M., Daigoku, K., Ueda, T., Yamanaka, T., Hashimoto, K., Fujii, M. (2001): Chem. Phys. Lett. 347, 87
Ito, F., Nakanaga, T. (2002): Chem. Phys. 277, 163
Iwahashi, K., Yamamoto, N., Fukuchi, T., Furusawa, J., Sekiya, H. (2001): Chem. Phys. 270, 333
Kawagoe, S., Nishi, K., Yamamoto, N., Sekiya, H., Sawada. T., Mataka, S., Tsuji, T., Nishimura, Y. (2000): Jpn. J. Deuterium Sci. 9, 15
Klochikhin, V.L., Trakhtenberg, L I. (1998): Chem. Phys. Lett. 285, 34
Levy, D.H. (1980): Ann. Rev. Phys. Chem. 31, 197
Lin, C.C., Swallen, J.D. (1959): Rev. Mod. Phys. 31, 841
Lin, S.H., Fujimura, Y., Neusser, H.J., Schlag, E.W. (1984): Multiphoton Spectroscopy of Molecules, Academic Press Inc., London
Lochbrunner, S., Schultz, T., Schmitt, M., Shaffer, J.P., Zgierski, M.Z., Stolow, A. (2001): J. Chem. Phys. 114, 2519
Loersting, T., Liedle, K.R. (1998): J. Am. Chem. Soc. 120, 1 2595
Lu, C.G., Hsieh, R.M.R., Lee, I.R., Cheng, P.Y. (1999): Chem. Phys. Lett. 310, 103
MacKenzie, V.J., Steer, R.P. (1998): Res. Chem. Intermed. 24, 813
MacKenzie, V.J., Zgierski, M.Z., Steer, R.P. (1999): J. Phys. Chem. 103, 8389 Milnikov, G.V., Nakamura, H. (2001): J. Chem. Phys. 115, 6881
Mitsuzuka, A., Fujii, A., Ebata, T., Mikami, N. (1996): J. Chem. Phys. 105, 2618
Moreno, M., Douhal, A., Lluch, J.M., Castano, O., Futos, L.M. (2001): J. Phys. Chem. A 105, 3887
Mori, H., Shida, N., Miyoshi, E., Sekiya, H. (2002): Jpn. J. Deuterium Sci. 11, 9
Mori, H., Sekiya, H., Miyoshi, E., Mogi, K., Sakai, Y. (2003): J. Chem. Phys. 119, 4159
Nagaoka, S., Nagashima, U. (1997): Trends in Phys. Chem. 6, 55
Nash, J., Zwier, S., Jordan, K.D. (1995): J. Chem. Phys. 102, 5260
Nishi, K. (2000); PhD Thesis, Fac. Sci. Kyushu University
Nishi, K., Sekiya, H., Hamabe, H., Nishimura, Y., Mochida, T., Sugawara, T. (1996): Chem. Phys. Lett. 257, 499
Nishi, K., Sekiya, H., Kawakami, H., Mori, A., Nishimura, Y. (1998): J. Chem. Phys. 109, 1589
Nishi, K., Sekiya, H., Kawakami, H., Mori, A., Nishimura, Y. (1999): J. Chem. Phys. 111, 3961
Nishi, K., Sekiya, H., Mochida, T., Sugawara, T., Nishimura, Y. (2000): J. Chem. Phys. 112, 5002
Okuyama, K., Mikami, N., Ito. M. (1985): J. Phys. Chem. 89, 5617
Ozeki, H., Takahashi, M., Okuyama, K., Kimura, K. (1991): J. Chem. Phys. 95, 9401
Ozeki, H., Takahashi, M., Okuyama, K., Kimura, K. (1993): J. Chem. Phys. 99, 56
Paz, J.J., Moreno, M., Lluch, J.M., (1995): J. Chem. Phys. 103, 353
Paz, J.J., Moreno, M., Lluch, J.M., (1997): J. Chem. Phys. 107, 6275
Pino, G.A., Dedonder-Lardeux, C., Gregoire, G., Jouvet, C., Martrenchard, S., Solgadi, D. (1999): J. Chem. Phys. 111, 10747
Redington, R.L. (2000): J. Chem. Phys. 113, 2319
Redington, R.L., Chen, Y.Q., Scherer, G.J., Field, R.W. (1988): J. Chem. Phys. 88, 627
Redington R.L., Redington, T.E., Hunter, M.A., Field, R.W. (1990): J. Chem. Phys. 92, 6456
Redington, R.L., Redington T.E., Montgomery, J.M. (2000): J. Chem. Phys. 113, 2304
Remmers, K., Meerts, W.L., Ozier, R. (2000): J. Chem. Phys. 112, 10890
Rossetti, R., Brus, L. E. (1980): J. Chem. Phys. 73, 1546
Rossetti, R., Rayford, R., Haddon, R.C., Brus, L. E. (1981): J. Am. Chem. Soc. 103, 4303
Sanders, N.D. (1981): J. Mol. Spectrosc. 86, 27
Sekiya, H., Nagashima, Y., Nishimura, Y. (1990): J. Chem. Phys. 92, 5761
Sekiya, H., Nagashima, Y., Tsuji, T., Nishimura, Y., Mori, A., Takeshita, H. (1991): J. Phys. Chem. 95, 10311
Sekiya, H., Nakajima, T., Ujita, H., Ito, S., Nishimura, Y. (1993): Chem. Phys. Lett. 215, 499
Sekiya, H., Tsuji, T., Ito, S., Mori, A., Takeshita, H., Nishimura, Y. (1994a): J. Chem. Phys. 101, 3464
Sekiya, H., Hamabe, H., Nakajima, T. (1994b): Chem. Phys. Lett. 224, 563
Sekiya, H., Hamabe, H., Ujita, H., Nakano, N., Nishimura, Y. (1995a): J. Chem. Phys. 103, 3895
Sekiya H., Nakano, N., Nishi, K., Hamabe H., Sawada, T., Tashiro, M., Nishimura, Y. (1995b): Chem. Lett. 893
Sekiya, H., Hamabe, H., Ujita, H., Nakano, N., Nishimura, Y. (1996): Chem. Phys. Lett. 255, 437
Shida, N., Barbara, P.F., Almlöf, J. (1989): J. Chem. Phys. 91, 4061
Shida, N., Barbara, P.F., Almlöf, J. (1991): J. Chem. Phys. 94, 3633
Siebrand, W., Smedarchina, Z., Zgierski, M.Z., Fernandes-Ramos, A. (1999): Int. Rev. Phys. Chem. 18, 5
Sinha, H.K., Steer, R.P. (1995): Chem. Phys. Lett. 241, 328
Soblewski, A.L., Domcke, W. (1994): Chem. Phys. 184, 115
Soblewski, A.L., Domcke, W. (1998): Chem. Phys. 232, 257
Takada, S., Nakamura, H. (1995): J. Chem. Phys. 102, 3997
Takeuchi, S., Tahara, T. (1998): J. Phys. Chem. A 102, 7740
Takeuchi, S., Tahara, T. (2001): Chem. Phys. Lett. 347, 108
Tanaka, K., Honjo, H., Tanaka, T., Kohguchi, H., Ohshima, Y., Endo, Y. (1999): J. Chem. Phys. 110, 1969
Taylor, C.A., El Bayoumi, M.A., Kasha, M. (1969): Proc. Natl. Acad. Sci. USA 63, 253
Tomioka, Y., Ito, M., Mikami, N. (1983): J. Phys. Chem. 87, 4401
Tsuji, T., Sekiya, H., Nishimura, Y., Mori, R., Mori, A., Takeshita, H. (1992): J. Chem. Phys. 97, 6032
Tsuji, T., Sekiya, H., Ito, S., Ujita, H., Habu, M., Mori, A., Takeshita, H., Nishimura, Y. (1993): J. Chem. Phys. 98, 6571
Tsuji, T., Hayashi, Y., Sekiya, H., Hamabe, H., Nishimura, Y., Kawakami, H., Mori, A. (1997): Chem. Phys. Lett. 278, 49
Tsuji, T., Hayashi, Y., Hamabe, H., Kawakami, H., Mori, A., Nishimura, Y., Sekiya, H. (1999): J. Chem. Phys. 110, 8485
Ushiyama, H., Takatsuka, K. (2001): J. Chem. Phys. 115, 5903
Vener, M.V., Scheiner, S., Sokolov, N.D. (1994): J. Chem. Phys. 101, 9755
Vener, M.V., Sekiya, H. (2003): to be published
Wojcik, M.J., Nakamura, H., Iwata, S., Tatara, W. (2000): J. Chem. Phys. 112, 6322
Yagi, K., Taketsugu, T., Hirao, K. (2001): J. Chem. Phys. 115, 10647
Yokoyama, F., Watanabe, H., Omi, T., Ishiuchi, S., Fujii, M. (2001): J. Phys. Chem. A 105, 9366
Zewail, A.H. (eds) (1994): Ultrafast Dynamics of the Chemical Bond, Vols. 1&2, World Scientific, Singapore
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2004 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Sekiya, H. (2004). Atom Tunneling and Molecular Structure. In: Miyazaki, T. (eds) Atom Tunneling Phenomena in Physics, Chemistry and Biology. Springer Series on Atomic, Optical, and Plasma Physics, vol 36. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-05900-5_10
Download citation
DOI: https://doi.org/10.1007/978-3-662-05900-5_10
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-05684-0
Online ISBN: 978-3-662-05900-5
eBook Packages: Springer Book Archive