Abstract
Combination of hetero-nuclear two-dimensional NMR spectroscopy with pressure in the range 1~4 kbar enables one to detect and analyze structures of higher energy conformers of proteins existing between the fully folded and the fully unfolded. The idea is based on the recognition that partial molar volume of a protein decreases in parallel with the loss of its conformational order. Available information suggests that the structure determined at high pressure is generally related to the structure at 1 bar by linear compression. The method opens a new area of structural biology that will lead to better understanding of protein function, folding and conformational disease.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
K. Heremans, High pressure effects on proteins and other biomolecules, Annu. Rev. Biophys. Bioeng. 11, 1–21 (1982).
C. A. Royer, Application of pressure to biochemicval equilibriua: the other thermodynamic variable. Methods Enzymol. 259, 395–427 (1995).
J. S. Silva and G. Weber, Pressure stability of proteins, Annu. Rev. Phys. Chem. 44, 89–113 (1993).
J. Jonas and A. Jonas, High-pressure NMR spectroscopy of proteins and membranes. Ann. Rev. Biophys. Biochem. 23, 287–318 (1994).
I. Morishima, Current perspectives of high pressure biology. Academic Press, New York, pp. 325–333 (1987).
K. Akasaka and H. Yamada, On-Line Cell High Pressure Nuclear Magnetic Resonance Technique: Application to Protein Studies. in Methods in Enzymology 338: Nuclear Magnetic Resonance of Biological Macromolecules Part A (T. L. James et al., eds.), Academic Press, 134–158 (2001).
H. Li, H. Yamada and K. Akasaka, Effect of pressure on individual hydrogen bonds in proteins. Basic pancreatic trypsin inhibitor. Biochemistry 37, 1167–1173 (1998).
M. Iwadate, T. Asakura, P. V. Dubovskii, H. Yamada, K. Akasaka and M. P. Williamson, Pressure-dependent changes in the structure of the melittin a-helix determined by NMR, J. Biomol. NMR 19 (2): 115–124 (2001).
H. Yamada, K. Nishikawa, M. Honda, T. Shikmura, K. Akasaka and K. Tabayashi, Pressure-resisting cell for high-pressure, high-resolution nuclear magnetic resonance measurements at very high magnetic fields. Rev. Sci. Inst. 72, 1463–1471 (2001).
R. Kitahara, H. Yamada, K. Akasaka and P. E. Wright, High pressure NMR reveals that apomyoglobin is an equilibrium mixture from the native to the unfolded. J. Mol. Biol. 320, 311–319 (2002).
C. Redfield, B. A. Schulman, M. A. Milhollen, P. S. Kim and C. M. Dobson, alactalbumin forms a compact molten globule in the absence of disulfide bonds. Nat. Struct. Biol. 6, 948–952 (1999).
K. Inoue, H. Yamada, K. Akasaka, C. Herrmann, W. Kremer, T. Maurer, R. Doeker and H. R. Kalbitzer, Pressure-induced local unfolding of the Ras-binding domain of RalGEF, Nature Structural Biology, 7, 547–550 (2000).
K. Kuwata, H. Li, H. Yamada, C. A. Batt, Y. Goto and K. Akasaka, High pressure NMR reveals a variety of fluctuating conformers in ß-lactoglobulin. J. Mol. Biol. 305, 1073–1083 (2001).
R. Kitahara, S. Sareth, H. Yamada, E. Ohmae, K. Gekko, K. and K. Akasaka, High Pressure NMR reveals active—site hinge motion of folate—bound Escherichia coli dihydrofolate reductase. Biochemistry 39, 12789–12795 (2000).
R. Kitahara, H. Yamada and K. Akasaka, Two folded conformers of ubiquitin revealed by high pressure NMR. Biochemistry 40, 13556–13563 (2001).
R. Kitahara, C. Royer, H. Yamada, M. Boyer, J. L. Saldana, K. Akasaka and C. Roumestand, Equilibrium and pressurejump relaxation studies of the conformational transitions of P13MTCP1. J. Mol. Biol. 329, 609–628 (2002).
K. Kuwata, H. Li, H. Yamada, G.Legname, S. B. Prusiner, K. Akasaka and T. L. James, Locally disordered conformer of Hamster prion: A crucial intermediate to PrPSC ? Biochemistry 41, 12277–12283 (2002).
K. Akasaka and H. Li, Low-lying excited states of proteins from nonlinear pressure shifts in 1H and 15N NMR. Biochemistry 40, 8665–8671 (2001).
K. J. Frye and C. A. Royer, Probing the contribution of internal cavities to the volume change of protein unfolding under pressure. Protein Sci. 7, 2217–2222 (1998).
M. W. Lassalle, H. Yamada, H. Morii, K. Ogata, A. Sarai and K. Akasaka, Filling a cavity dramatically increases pressure stability of the c-Myb R2 domain. Proteins: Structure, Function and Genetics 45, 96–101 (2001).
T. V. Chalikian, K. J. Breslauer, On volume changes accompanying conformational transitions of biopolymers. Biopolymers 39, 619–626 (1996).
C. Royer, Revisiting volume changes in pressure-induced protein unfolding. Bioochim. Biophys. Acta 1595, 201–209 (2002).
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2003 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Akasaka, K. (2003). High Pressure NMR Spectroscopy Characterizes Higher Energy Conformers of Proteins. In: Winter, R. (eds) Advances in High Pressure Bioscience and Biotechnology II. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-05613-4_2
Download citation
DOI: https://doi.org/10.1007/978-3-662-05613-4_2
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-05674-1
Online ISBN: 978-3-662-05613-4
eBook Packages: Springer Book Archive