Skip to main content

Creating Knowledge from High-Throughput Screening Data

  • Conference paper
Small Molecule — Protein Interactions

Part of the book series: Ernst Schering Research Foundation Workshop ((SCHERING FOUND,volume 42))

  • 146 Accesses

Abstract

High-throughput screening (HTS) is a core component for the identification of lead candidates in modern pharmaceutical drug discovery. It is a highly automated process that operates on an industrial scale. The current screening capacities of pharmaceutical HTS units are actually reaching tens of thousands compounds per day, and even this throughput performance is constantly challenged by advances in miniaturization and automation technology (Wildey et al. 1999; Burbaum 2000). The vast amount of information about structure-activity relationships (SAR) produced by HTS in pharmaceutical companies for lead identification has created a great need for fast, accurate, and fully automated data analysis tools. Manual processing of the resulting data or the application of conventional data analysis techniques is no viable option for logistical reasons. Hence, there is much current interest in novel analytical approaches that support the many facets of data analysis in HTS.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 209.00
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Ajay, Bemis GW, Murcko, MA (1999) Designing libraries with CNS activity. J Med Chem 42: 4942–4951

    Article  PubMed  CAS  Google Scholar 

  • Burbaum JJ (2000) The evolution of miniaturized well plates. J Biomol Screen 5: 5–12

    Article  PubMed  CAS  Google Scholar 

  • Engels MFM, Thielemans T, Verbinnen D, Tollenaere JP, Verbeeck, R (2000) CerBeruS: a system supporting the sequential screening process. J Chem Inf Comp Sci 40: 241–245

    Article  CAS  Google Scholar 

  • Engels MFM, Knapen K, Tollenaere JP (2001) Approaches for mining highthroughput screening data sets. In: Hoeltje H-D, Sippl W (eds) Rational approaches to drug design. Prous Science, Barcelona, pp 496–505

    Google Scholar 

  • Engels MFM, Wouters L, Verbeeck, R, Vanhoof G (2002) Outlier mining in high-throughput screening experiments. J Biomol Screen7: 341–351

    Google Scholar 

  • Gao H, Williams C, Labute P, Bajorath J (1999) Binary quantitative structure-activity relationship ( QSAR) analysis of estrogen receptor ligands. J Chem Inf Comp Sci 39: 164–168

    Google Scholar 

  • Gedeck P, Willett P (2001) Visual and computational analysis of structure-activity relationships in high-throughput screening data. Curr Opin Chem Biol 5: 389–395

    Article  PubMed  CAS  Google Scholar 

  • Hand D, Mannila H, Smyth P (2001) Principles of data mining, MIT Press, Cambridge

    Google Scholar 

  • Hawkins DM, Young SS, Rusinko A (1997) Analysis of large structure-activity data set using recursive partitioning. Quant Struct-Act Relat 16: 296–302

    Article  CAS  Google Scholar 

  • Jones-Hertzog DK, Mukhopadhyay P, Keefer CE, Young SS (1999) Use of recursive partitioning in the sequential screening of G-protein coupled receptors. J Pharmacol Toxicol Methods 42: 207–216

    Article  PubMed  CAS  Google Scholar 

  • Labute P (1996) QuaSAR-Binary: a new method for the analysis of high throughput screening data. Network Sci. [electronic publication] http://www.netsci.org/Science/Compchem/feature2l.html

    Google Scholar 

  • Ladd B, Kenner S (2000) Information visualization and analytical data mining in pharmaceutical RD. Curr Opin Drug Discov Dev 3: 280–291

    CAS  Google Scholar 

  • Nicolaou CA, Tamura SY, Kelley BP, Bassett SI, Nutt RF (in press) Analysis of Large Screening Datasets Via Adaptively Grown Phylogenetic-Like Trees. J Chem Inf Comp Sci

    Google Scholar 

  • Roche O, Schneider P, Zuegge J, Guba W, Kansy M, Alanine A, Bleicher K, Danel F, Gutknecht EM, Roger-Evans M, Neidhart W, Stalder H, Dillon M, Sjogren E, Fotouhi N, GP (2002) Development of a virtual screening method for identification of “frequent hitters” in compound libraries. J Med Chem 45: 137–142

    CAS  Google Scholar 

  • Rusinko A, Farmen, MW, Lambert CG, Brown, PL, Young, SS (1999) Analysis of a large structure/biological activity data set using recursive partitioning. J Chem Inf Comp Sci 39: 1017–1026

    Article  CAS  Google Scholar 

  • Small RD, Edelstein HA (2001) Data mining in pharmaceutical industry. Drug Discov World Fall: 39–48

    Google Scholar 

  • Spencer RW (1997) Diversity analysis in high throughput screening. J Biomol Screen 2: 69–70

    Article  Google Scholar 

  • Wildey MJ, Homon CA, Hutchins B (1999) Allegro: moving the bar upwards. J Biomol Screen 4: 57–60

    Article  PubMed  Google Scholar 

Download references

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2003 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Engels, M.F.M. (2003). Creating Knowledge from High-Throughput Screening Data. In: Waldmann, H., Koppitz, M. (eds) Small Molecule — Protein Interactions. Ernst Schering Research Foundation Workshop, vol 42. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-05314-0_7

Download citation

  • DOI: https://doi.org/10.1007/978-3-662-05314-0_7

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-662-05316-4

  • Online ISBN: 978-3-662-05314-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics