Skip to main content

Smooth Ride: Low-Pass Filtering of Manual Segmentations Improves Consensus

  • Conference paper
  • First Online:
  • 2028 Accesses

Part of the book series: Informatik aktuell ((INFORMAT))

Zusammenfassung

In this paper, we investigate slice-wise manual segmentation of knee anatomy. Due to high inter-rater variability between annotators, often a high number of raters is required to obtain a reliable ground truth consensus. We conducted an extensive study in which cartilage surface was segmented manually by six annotators on three scans of the knee. The slice-wise annotation results in high-frequency artifact that can be reduced by averaging over the segmentations of the annotators. A similar effect can also be obtained by smoothing the surface using low-pass filtering. In our results, we demonstrate that such filtering increases the consistency of the annotation of all raters. Furthermore, due to the smoothness of the cartilage surface, strong filtering produces surfaces that show differences to the ground truth that are in the same order of magnitude as the inter-rater variation. The remaining root mean squared error lies in the range of 0:11 to 0:14 mm. These findings show that appropriate pre-processing techniques result in segmentations close to the consensus of multiple raters, suggesting that in the future fewer annotators are required to achieve a reliable segmentation.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   54.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   69.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Literatur

  1. Pham DL, Xu C, Prince JL. Current methods in medical image segmentation. Annu Rev Biomed Eng. 2000;2(1):315–337.

    Article  Google Scholar 

  2. Ronneberger O, Fischer P, Brox T. U-net: convolutional networks for biomedical image segmentation. In: Proc MICCAI. vol. 9351. Springer; 2015. p. 234–241.

    Google Scholar 

  3. Milletari F, Navab N, Ahmadi SA. V-Net: fully convolutional neural networks for volumetric medical image segmentation. In: Proc 3DV. IEEE; 2016. p. 565–571.

    Google Scholar 

  4. Choi JH, Fahrig R, Keil A, et al. Fiducial marker-based correction for involuntary motion in weight-bearing C-arm CT scanning of knees: part 1: numerical modelbased optimization. Med Phys. 2013;40(9):091905–1–12.

    Article  Google Scholar 

  5. Choi JH, Maier A, Keil A, et al. Fiducial marker-based correction for involuntary motion in weight-bearing C-arm CT scanning of knees: part 2: experiment. Med Phys. 2014;41(6):061902–16.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jennifer Maier .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Fachmedien Wiesbaden GmbH, ein Teil von Springer Nature

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Maier, J. et al. (2019). Smooth Ride: Low-Pass Filtering of Manual Segmentations Improves Consensus. In: Handels, H., Deserno, T., Maier, A., Maier-Hein, K., Palm, C., Tolxdorff, T. (eds) Bildverarbeitung für die Medizin 2019. Informatik aktuell. Springer Vieweg, Wiesbaden. https://doi.org/10.1007/978-3-658-25326-4_21

Download citation

Publish with us

Policies and ethics