Abstract
In recent years, molecular marker-assisted selection has been integrated into several plant breeding programs to select traits of agronomical importance. Isozymes were initially sought for this purpose, but their use was hindered by the rather small number of loci and alleles available for analysis. The development of molecular biology has resulted in alternative DNA-based procedures for the detection of polymorphism. These include restriction fragment length polymorphism (Tanksley et al. 1989), random amplified polymorphic DNA (Williams et al. 1990), and cleaved amplified polymorphic sequences (Akkaya et al. 1992).
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References
Akkaya MS, Bhagwat AA, Cregan PB (1992) Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132:1131–1139
Altman DW, Stelly DM, Kohel RJ (1987) Introgression of the glanded-plant and glandless-seed trait from Gossypium sturtianum Willis into cultivated upland cotton using ovule culture. Crop Sci 27:880–884
Arnold ML, Buckner CM, Robinson (1991) Pollen-mediated introgression and hybrid speciation in Louisiana irises. Proc Natl Acad Sci USA 88:1398–1402
Arumunganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208–218
Baird E, Lojkowska E, Ehlenfeldt MK, Kelman A, Helgeson JP (1992) Molecular characterization of inter- and intra-specific somatic hybrids of potato using random amplified polymorphic DNA (RAPD) markers. Mol Gen Genet 233:469–475
Beckman JS, Soller M (1986) Restriction fragment length polymorphism and genetic improvement of agricultural species. Euphytica 35:111–124
Brubaker CL, Wendel JF (1994) Reevaluating the origin of domesticated cotton (Gossypium hirsutum, Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs). Am J Bot 81(10):1309–1326
Devos KM, Gale MD (1992) The use of random amplified polymorphism DNA markers in wheat. Theor Appl Genet 84:194–200
Dilday RH (1986) Development of cotton plant with glandless seeds and glanded foliage and fruiting forms. Crop Sci 26:639–641
Endrizzi JE, Turcotte EL, Kohel RJ (1985) Genetics, cytology and evolution of Gossypium. Adv Genet 23:271–275
Fritsch P, Hanson MA, Spore CD, Pack PE, Rieseberg L (1993) Constancy of RAPD primer amplification stength among distantly related taxa of flowering plants. Plant Mol Biol Rep 11:10–20
Gill MS, Bajaj YPS (1987) Hybridization between diploid (Gossypium arboreum) and tetraploid (Gossypium hirsutum) cotton through ovule culture. Euphytica 36:625–630
Halward T, Stalker HT, LaRue E, Kochert G (1991) Genetic variation detectable with molecular markers among unadapted germplasm resources of cultivated peanut and related wild species. Genome 34:1013–1020
Halward T, Stalker HT, LaRue E, Kochert G (1992) Use of single-primer DNA amplifications in genetic studies of peanut (Arachis hypogea). Plant Mol Biol 18:315–325
He S, Ohm H, Mackenzie S (1992) Detection of DNA sequence polymorphisms among wheat varieties. Theor Appl Genet 84:573–578
Heun M, Helentjaris T (1993) Inheritance of RAPDs in F1 hybrids of corn. Theor Appl Genet 85:961–968
Heun M, Murphy JP, Phillip TD (1994) A comparison of RAPD and isozyme analysis for determining the genetic relationships among Avena sterilis L. accessions. Theor Appl Genet 87:689–696
Hu J, Quiros CF (1991) Identification of brocolli and cauliflower cultivars with RAPD markers. Plant Cell Rep 10:505–511
Jacobsen E, De Jong JH, Kamstra SA, Van Den Berg PM, Ramanna MS (1995) Geomic in situ hybridization (GISH) and RFLP analysis for the identification of alien chromosomes in the backcross progeny of potato (+) tomato fusion hybrids. Heredity 74:250–257
Joshi CP, Nguyen HT (1993) Application of the random amplified polymorphic DNA technique for the detection of polymorphism among wild and cultivated tetraploid wheats. Genome 36:602–609
Kesseli RV, Paran I, Michelmore RW (1994) Analysis of a detailed genetic linkage map of Lectuca sativa (lettuce) constructed from RFLP and RAPD markers. Genetics 136:1435–1446
Klein-Lankhorst RM, Vermunt A, Weide R, Liharska T, Zabel P (1991) Isolation of molecular markers for tomato (Lycopersicon esculentum) using random amplified polymorphic DNA (RAPD). Theor Appl Genet 83:108–114
Koto E (1989) Tentative de transfert du caractère “retard à la morphogénèse des glandes à gossypol” I. Caractéristiques des hexaploides G. hirsutum X G. sturtianum et G. hirsutum X G. australe. 1ère Conférence de la recherche cotonnière africaine, Lomé, Togo, 31 janv.-2 fév., 1989, IRCT, Montpellier, Tome 1:167–173
McCoy TJ, Echt CS (1993) Potential of trispecies bridge crosses and random amplified polymorphic DNA markers for introgression of Medicago daghestanica and M. pironae germplasm into alfalfa (M. sativa). Genome 36:594–601
Marshall P, Marchand MC, Lisieczko Z, Landry BS (1994) A simple method to estimate the percentage of hybridity in canola (Brassica napus) F1 hybrids. Theor Appl Genet 89:853–858
Masuelli RW, Tanimoto EY, Brown CR, Comai L (1995) Irregular meiosis in a somatic hybrid between Solanum bulbocastanum and S. tuberosum detected by species-specific PCR markers and cytological analysis. Theor Appl Genet 91:401–408
Mergeai G (1992) New perspectives concerning the methodology to be used for introgression of the glanded-plant and glandless-seed character in cultivated cotton (Gossypium hirsutum L.). Coton Fibres Trop 47:113–119
Mergeai G, Vroh Bi I, du Jardin P, Baudoin JP (1995) Introgression of glanded-plant and glandless-seed trait from G. sturtianum Willis into tetraploid cotton plants. Proc Beltwide Cotton Improvement Conf, San Antonio, 6–7 Jan 1995, pp 513–514
Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating population. Proc Natl Acad Sci USA 88:9828–9832
Multani DS, Lyon BR (1995) Genetic fingerprinting of Australian cotton cultivars with RAPD markers. Genome 38:1005–1008
Murray M, Thomson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321–4325
Olson M, Hood L, Cantor C, Botstein D (1989) A common language for physical mapping of the human genome. Science 245:1434–1435
Orozco-Castillo C, Chalmers KJ, Wangh R, Powell W (1994) Detection of genetic diversity and selective gene introgression in coffee using RAPD markers. Theor Appl Genet 87:934–940
Paran I, Michelmore W (1993) Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85:985–993
Quiros CF, Hu J, This P, Chevre AM, Delseny M (1992) Developmental and chromosomal localization of genome-specific markers by polymerase chain reaction in Brassica. Theor Appl Genet 82:627–632
Reinisch AJ, Dong Jian-min, Brubaker CL, Stelly DM, Wendel JF, Paterson AH (1994) A detailed RFLP map of cotton, Gossypium hirsutum X Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics 138:829–847
Reiter RS, Williams JGK, Feldmann KA, Rafalski JA, Tingey SV, Sclonik PA (1992) Global and local genome mapping in Arabidopsis thaliana by using recombinant inbred lines and random amplified polymorphic DNAs. Proc Natl Acad Sci USA 81:8014–8018
Rooney WL, Stelly DM, Altman DW (1991) Identification of four Gossypium sturtianum monosomie alien addition derivatives form a backcrossing program with G. hirsutum. Crop Sci 31:337–341
Rowland LJ, Levi A (1994) RAPD-based genetic linkage map of blueberry derived from a cross between diploid species (Vaccinium darrowi and V. elliottii). Theor Appl Genet 87:863–868
Stewart J McD, Hsu CL (1977) In-ovulo embryo culture and seedling development of cotton (Gossypium hirsutum L.). Planta 137:113–117
Tanksley SD, Young ND, Pat AH, Bonierbale MW (1989) RFLP mapping in plant breeding - new tools for an old science. Bio/Technology 7:257–264
Tatineni V, Cantrell RG, Davis DD (1996) Genetic diversity in elite cotton germplasm determined by morphological characteristics and RAPDs. Crop Sci 36(1):186–192
Tinker NA, Fortin MG, Mather GE (1993) Random amplified polymorphic DNA and pedigree relationships in spring barley. Theor Appl Genet 85:976–984
Tulsieram LK, Glaubitz JC, Kiss G, Carlson JE (1992) Single tree linkage mapping in conifers using haploid DNA from megagametophytes. Biotechnolgy 10:686–690
Van Hausden AW, Bachmann K (1992) Genotype relationships in Microseries elegans (Asteraceae, Latcuceae) revealed by DNA amplification from arbitrary primers (RAPDs). Plant Syst Evol 179:221–233
Veli-Matti Rokka, Yong-Shen Xu, Jyri Kankila, Anja Kuusela, Seppo Pulli, Eija Pehu (1992) Identification of somatic hybrids of dihaploid Solanum tuberosum lines and S. brevidens by species-specific RAPD patterns and assessment of disease resistance of the hybrids. Euphytica 80:207–217
Vierling RA, Nguyen HT (1992) Use of RAPD markers to determine the genetic diversity of diploid wheat genotypes. Theor Appl Genet 84:835–838
Vroh Bi I, Harvengt L, Chandelier A, Mergeai G, du Jardin P (1996) Improved RAPD amplification of recalcitrant plant DNA by the use of activated charcoal during DNA extraction. Plant Breed 115:205–206
Vroh Bi I, du Jardin P, Mergeai G, Baudoin J-P (1997) Optimisation et application de la RAPD (random amplified polymorphic DNA) dans un programme de sélection récurrente chez le cotonnier (Gossypium spp.). Biotechnol Agron Soc Environ 1:142–150
Walbot V, Duke LS (1976) Developmental biochemistry of cotton seed embryogenesis and germination. 7. Characterisation of the cotton genome. J Mol Biol 101:503–536
Welsh J, Honeycutt RJ, McClelland M, Sobral BWS (1991) Parentage determination in maize hybrids using arbitrarly primed polymerase chain reaction (AP-PCR). Theor Appl Genet 82:473–476
Wilde J, Waugh R, Powell W (1992) Genetic fingerprinting of Theobroma clones using randomly amplified polymorphic DNA markers. Theor Appl Genet 83:871–877
Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingery SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 22:6531–6535
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Mergeai, G., Vroh Bi, I., Baudoin, J.P., Du Jardin, P. (1998). Use of Random Amplified Polymorphic DNA (RAPD) Markers to Assist Wide Hybridization in Cotton. In: Bajaj, Y.P.S. (eds) Cotton. Biotechnology in Agriculture and Forestry, vol 42. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-80373-4_8
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DOI: https://doi.org/10.1007/978-3-642-80373-4_8
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