Skip to main content

Nuclear Shielding and Biomolecular Structure

  • Conference paper
NMR of Biological Macromolecules

Part of the book series: NATO ASI Series ((ASIH,volume 87))

Abstract

The origin of the chemical shift is easily understood in qualitative terms (Jardetzky and Roberts 1981; Harris 1983). Since electrons are moving charges, they are subject to the laws of electromagnetic induction. The net effect of the magnetic field is to superimpose a motion of electrons around the field axis on the orbital motion of the electron. In addition, the applied field will polarize the electron cloud. The motion of the electron generates a local magnetic field at the nucleus opposing the external induction field. The magnitude of the induced field will be proportional to the imposed field B0 so that the effective field Beff at the nucleus will be:

$$ {B_{{eff}}} = {B_{o}}(1 - \sigma ) $$
(1)

The nucleus is said to be shielded, the extend of shielding being given by the shielding constant a. This scalar shielding constant represents the isotropic part of the chemical shift tensor a:

$$ \sigma = \frac{1}{3}{\mkern 1mu} Trace{\mkern 1mu} (\sigma ) $$
(2)

The anisotropic components of a are averaged by fast reorientational motions. The non zero scalar shielding constant is often defined as the sum of contributions from a diamagnetic, ad, and a paramagnetic, ap, term:

$$ \sigma = {\sigma ^{d}} + {\sigma ^{p}} $$
(3)

The diamagnetic part relates to the concept of the free electron rotation about the nucleus and involves only the ground state electronic wave function of the molecule. In molecules the presence of the other nuclei hinders rotation of the electron cloud about the nucleus whose shielding is being considered.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Abraham RJ (1961) The proton magnetic resonance spectra of porphyrins. Part II. Ring current effects in the porphyrins. Mol Phys 4: 145–152

    Article  CAS  Google Scholar 

  • Andersson T, Drakenberg T, Forsen S, Thulin E and Sward M (1982) Direct observation of the 43Ca NMR signals from Ca2+ ions bound to proteins. J Am Chem Soc 104: 576–580

    Article  CAS  Google Scholar 

  • Ando I and Webb GA (1981) Some quantum chemical aspects of solvent effects on NMR parameters. Org Magn Reson 15: 111–130

    Article  CAS  Google Scholar 

  • Ando I and Webb GA (1983) Theory of NMR parameters. Academic Press/London

    Google Scholar 

  • Asakura T, Niizawa Y and Williamson MP (1992) Determination of the magnetic anisotropy of the oxygen atom and chemical-shift calculation of proteins. J Magn Reson 98: 646–653

    Article  CAS  Google Scholar 

  • Augspurger J, Pearson JG, Oldfield E, Dykstra CE, Park KD and Schwartz D (1992) Chemical-shift ranges in proteins. J Magn Reson 100: 342–357

    Article  CAS  Google Scholar 

  • Baker EN and Hubbard RE (1984) Hydrogen bonding in globular proteins. Progr Biophys Mol Biol 44: 97–179

    Article  CAS  Google Scholar 

  • Batchelor JG (1975) Theory of linear electric field shifts in carbon-13 nuclear magnetic resonance. J Am Chem Soc 97: 3410–3415

    Article  CAS  Google Scholar 

  • Batchelor JG, Feeney J and Roberts GCK (1975) Carbon-13 NMR protonation shifts of amines, carboxylic acids and amino acids. J Magn Reson 20: 19–38

    Article  CAS  Google Scholar 

  • Böttcher C (1973) Theory of electric polarisation. Elsevier/Amsterdam vol 1

    Google Scholar 

  • Buckingham AD (1960) Chemical shifts in the nuclear magnetic resonance spectra of molecules containing polar groups. Can J Chem 38: 300–307

    Article  CAS  Google Scholar 

  • De Dios AC, Pearson JG and Oldfield E (1993) Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach. Science 260:1491–1496

    Article  Google Scholar 

  • Drakenberg T, Lindman B, Cave A and Parello J (1978) Non-equivalence of the CD and EF sites of muscular paralbumins. A ll3Cd NMR study. FEBS Letters 92: 346–350

    Article  CAS  Google Scholar 

  • Ebraheem KAK and Webb GA (1977) Semi-empirical calculations of the chemical shifts of nuclei other than protons. Progr NMR Spectrosc 11: 149–181

    Article  Google Scholar 

  • Ellis PD (1983) Cadmium-113 magnetic resonance spectroscopy. Science 221: 1141–1146

    Article  CAS  Google Scholar 

  • Gerothanassis IP, Loock B and Momenteau M (1992) Structural differences of the iron-dioxygen moiety of haemoprotein models with and without an axial hindered base as revealed by 17O NMR and FTIR spectroscopy in solution. J Chem Soc Chem Commun: 598–600

    Google Scholar 

  • Gerothanassis IP and Vakka C (1993) l7O NMR chemical shifts as a tool to study specific hydration sites of amides and peptides - correlation with the IR amide I stretching vibration. Submitted

    Google Scholar 

  • Giessner-Prettre C and Pullman B (1987) Quantum mechanical calculations of NMR chemical shifts in nucleic acids. Quart Rev Biophys 20: 113–172

    Article  CAS  Google Scholar 

  • Glushka J, Lee M, Coffin S and Cowburn D (1989) 15N chemical shifts of backbone amides in bovine pancreatic trypsin inhibitor and apamin. J Am Chem Soc 111: 7716–7722

    Article  CAS  Google Scholar 

  • Haigh CW and Mallion RB (1972) New tables of “ring current” shielding in proton magnetic resonance. Org Magn Reson 4: 203–228

    Article  CAS  Google Scholar 

  • Harris RK (1983) Nuclear magnetic resonance spectroscopy. Pitman/London

    Google Scholar 

  • Jameson CJ and Gutowsky HS (1964) Calculation of chemical shifts. I. General formulation and the Z dependence. J Chem Phys 40: 1714–1724

    Article  CAS  Google Scholar 

  • Jameson CJ and Mason J (1987) The chemical shift. In: Mason J (ed). Multinuclear NMR. Plenum Press/New York: 51–88

    Chapter  Google Scholar 

  • Jardetzky O and Roberts GCK (1981) NMR in molecular biology. Academic Press/New York

    Google Scholar 

  • Johansson C and Drakenberg T (1989) Metal-ion NMR studies of ion binding. Annual Reports on NMR Spectroscopy 22: 1–59

    Article  Google Scholar 

  • Johnson CE and Bovey FA (1958) Calculation of nuclear magnetic resonance spectra of aromatic hydrocarbons. J Chem Phys 29: 1012–1014

    Article  CAS  Google Scholar 

  • Osapay K and Case DA (1991) A new analysis of proton chemical shifts in proteins. J Am Chem Soc 113: 9436–9444

    Article  CAS  Google Scholar 

  • Perkins SJ and Dwek RA (1980) Comparisons of ring-current shifts calculated from the crystal structure of egg white lysozyme of hen with the proton nuclear magnetic resonance spectrum of lysozyme in solution. Biochemistry 19: 245–258

    Article  CAS  Google Scholar 

  • Pople JA (1956) Proton magnetic resonance of hydrocarbons. J Chem Phys 24–1111

    Article  CAS  Google Scholar 

  • Pople JA, Schneider WG and Bernstein HJ (1959) High resolution nuclear magnetic resonance. McGraw-Hill/New York ch. 15

    Google Scholar 

  • Pople JA (1962) Molecular-orbital theory of diamagnetism. I. An approximate LCAO scheme. J Chem Phys 37: 53–59

    Article  Google Scholar 

  • Raynes WT, Buckingham AD and Bernstein HJ (1962) Medium effects on proton magnetic resonance. I. Gases. J Chem Phys 36: 3481–3488

    Article  CAS  Google Scholar 

  • Ribas Prado F, Giessner-Prettre C, Pullman A, Hinton JF, Harpool D and Metz KR (1981) Non empirical quantum mechanical calculations of the 1H, 13C l5N and 17O magnetic shielding constants and of the spin-spin coupling constants in formamide, hydrated formamide and N-methylformamide. Theor Chim Acta 59: 55–59

    Article  Google Scholar 

  • Shulman RG, Wüthrich K, Yamane T, Patel DJ and Blumberg WE (1970) Nuclear magnetic resonance determination of ligand-induced conformational changes in myoglobin. J Mol Biol 53: 143–157

    Article  CAS  Google Scholar 

  • Spera S and Bax A (1991) Empirical correlation between protein backbone conformation and and 13C nuclear magnetic resonance chemical shifts. J Am Chem Soc 113: 5490–5492

    Article  CAS  Google Scholar 

  • Wagner G, Pardi A and Wüthrich K (1983) Hydrogen bond length and 1H NMR chemical shifts in proteins. J Am Chem Soc 105: 5948–5949

    Article  CAS  Google Scholar 

  • Webb GA (1986) Theoretical background to high resolution NMR parameters and nuclear shielding calculations. In: Axenrod T and Ceccarelli G (eds). NMR in living systems. Reidel/Holland Dordrecht: 19–37

    Google Scholar 

  • Wishart DS, Sykes BD and Richards FM (1991) Relationship between nuclear magnetic resonance chemical shift and protein secondary structure. J Mol Biol 222: 311–333

    Article  CAS  Google Scholar 

  • Wishart DS, Sykes BD and Richards FM (1992) The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 31: 1647–1651

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1994 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Gerothanassis, I.P. (1994). Nuclear Shielding and Biomolecular Structure. In: Stassinopoulou, C.I. (eds) NMR of Biological Macromolecules. NATO ASI Series, vol 87. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-79158-1_5

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-79158-1_5

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-79160-4

  • Online ISBN: 978-3-642-79158-1

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics