Skip to main content
SpringerLink
Log in

Phylogenetic Relationships Using Restriction Site Variation of the Chloroplast DNA Inverted Repeat

  • Chapter
Caryophyllales

Abstract

Despite intensive multidisciplinary studies using nonmolecular characters, relationships among families comprising the Caryophyllales remain unclear. Reconstruction of phylogenies from molecular data has become an increasingly common approach in systematics and has often provided valuable insight into historical relationships. Of the three genomes present in plants, the chloroplast genome is now the most widely used for phylogenetic inference.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution
Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Albert VA, Mishler BD, Chase MW (1992a) Character-state weighting for restriction site data in phylogenetic reconstruction, with an example from chloroplast DNA. In: Soltis PS, Soltis DE, Doyle J J (eds) Molecular systematics of plants. Chapman and Hall, New York, pp 369–403

    Chapter  Google Scholar 

  • Albert VA, Williams, SE, Chase MW (1992b) Hierarchies of parallelism in carnivorous plants: Implications for structural evolution in angiosperms. Science 257:1491–1495

    Article  PubMed  CAS  Google Scholar 

  • Bedell HG (1980) A taxonomic and morphological re-evaluation of Stegnospermaceae (Caryophyllales). Syst Bot 5:419–431

    Article  Google Scholar 

  • Behnke H-D (1976) Ultrastructure of sieve-element plastids in Caryophyllales (Centro-spermae), evidence for the delimitation and classification of the order. Plant Syst Evol 126:31–54

    Article  Google Scholar 

  • Brown GK, Varadarajan GS (1985) Studies in Caryophyllales. I. Re-evaluation of classification of Phytolaccaceae s.1. Syst Bot 10:49–63

    Article  Google Scholar 

  • Chase MW, Soltis DE, Olmstead RG et al. (1993) Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL. Ann Mo Bot Gard 80:528–580

    Article  Google Scholar 

  • Cronquist A (1981) An integrated system of classification of flowering plants. Columbia University Press, New York

    Google Scholar 

  • Dahlgren R (1980) A revised system of classification of angiosperms. Bot J Linn Soc 80:91–124

    Article  Google Scholar 

  • Downie SR, Palmer JD (1992a) Use of chloroplast DNA rearrangements in reconstructing plant phylogeny. In: Soltis PS, Soltis DE, Doyle JJ (eds) Molecular systematics of plants. Chapman and Hall, New York, pp 14–35

    Chapter  Google Scholar 

  • Downie SR, Palmer JD (1992b) Restriction site mapping of the chloroplast DNA inverted repeat: A molecular phylogeny of the Asteridae. Ann Mo Bot Gard 79:266–283

    Article  Google Scholar 

  • Downie SR, Olmstead RG, Zurawski G, Soltis DE, Soltis PS, Watson JC, Palmer JD (1991) Six independent losses of the chloroplast DNA rpll intron in dicotyledons: Molecular and phylogenetic implications. Evolution 45:1245–1259

    Article  CAS  Google Scholar 

  • Doyle J J (1992) Gene trees and species trees: Molecular systematics as one-character taxonomy. Syst Bot 17:144–163

    Article  Google Scholar 

  • Eckardt T (1976) Classical morphological features of centrospermous families. Plant Syst Evol 126:5–25

    Article  Google Scholar 

  • Ehrendorfer F (1976) Closing remarks: Systematics and evolution of centrospermous families. Plant Syst Evol 126:99–106

    Article  Google Scholar 

  • Giannasi DE, Zurawski G, Learn G, Clegg MT (1992) Evolutionary relationships of the Caryophyllidae based on comparative rbcL sequences. Syst Bot 17:1–15

    Article  Google Scholar 

  • Heimerl A (1934) Phytolaccaceae. In: Engler A (ed) Die natürlichen Pflanzenfamilien, 2nd edn, vol 16c. Engelmann Leipzig, pp 135–167

    Google Scholar 

  • Hutchinson J (1973) The families of flowering plants, 3rd edn. Clarendon Press, Oxford

    Google Scholar 

  • Mabry TJ (1977) The order Centrospermae. Ann Mo Bot Gard 64:210–220

    Article  Google Scholar 

  • Narayana PS, Narayana LL (1986) The embryology of Stegnospermataceae, with a discussion on its status, affinities and systematic position. Plant Syst Evol 154:137–146

    Article  Google Scholar 

  • Nei M, Li W (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269–5273

    Article  PubMed  CAS  Google Scholar 

  • Nowicke JW, Skvarla JJ (1977) Pollen morphology and the relationship of the Plum-baginaceae, Polygonaceae, and Primulaceae to the order Centrospermae. Smithson Contrib Bot 37:1–64

    Google Scholar 

  • Olmstead RG, Michaels HJ, Scott KM, Palmer JD (1992) Monophyly of the Asteridae and identification of its major lineages inferred from DNA sequences of rbch. Ann Mo Bot Gard 79:249–265

    Article  Google Scholar 

  • Palmer JD (1982) Physical and gene mapping of chloroplast DNA from Atriplex triangularis andCucumis sativa. Nucleic Acids Res 10:1593–1605

    Article  PubMed  CAS  Google Scholar 

  • Palmer JD (1985) Comparative organization of chloroplast genomes. Annu Rev Genet 19:325–354

    Article  PubMed  CAS  Google Scholar 

  • Palmer JD (1986) Isolation and structural analysis of chloroplast DNA. Methods Enzymol 118:167–186

    Article  CAS  Google Scholar 

  • Palmer JD (1991) Plastid chromosomes: Structure and evolution. In: Bogoard L, Vasil IK (eds) The molecular biology of plastids, chap. 2. In: Vasil IK (ed-in-chief) Cell culture and somatic cell genetics of plants, vol 7A. Academic Press, San Diego, pp 5–53

    Google Scholar 

  • Palmer JD, Stein DB (1986) Conservation of chloroplast genome structure among vascular plants. Curr Genet 10:823–833

    Article  CAS  Google Scholar 

  • Palmer JD, Jansen RK, Michaels HJ, Chase MW, Manhart JR (1988) Chloroplast DNA variation and plant phylogeny. Ann Mo Bot Gard 75:1180–1206

    Article  Google Scholar 

  • Rettig JH, Wilson HD, Manhart JR (1992) Phylogeny of the Caryophyllales — gene sequence data. Taxon 41:201–209

    Article  Google Scholar 

  • Rodman JE, Oliver MK, Nakamura RR, McClammer JU Jr, Bledsoe AH (1984) A taxonomic analysis and revised classification of Centrospermae. Syst Bot 9:297–323

    Article  Google Scholar 

  • Shinozaki K, Ohme M, Tanaka M et al. (1986) The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression. EMBO J 5:2043–2047

    PubMed  CAS  Google Scholar 

  • Swofford DL (1990) PAUP: Phylogenetic analysis using parsimony, version 3.0. Illinois Natural History Survey, Champaign Takhtajan A (1980) Outline of the classification of flowering plants (Magnoliophyta). Bot Rev 46:225–359

    Google Scholar 

  • Zurawski G, Bottomley W, Whitfeld PR (1984) Junctions of the large single-copy region and the inverted repeats in Spinacia oleracea and Nicotiana debneyi chloroplast DNA: Sequence of the genes from tRNAHls and the ribosomal proteins S19 and L2. Nucleic Acids Res 12:6547–6558

    Article  PubMed  CAS  Google Scholar 

Download references

Authors
  1. Stephen R. Downie
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Jeffrey D. Palmer
    View author publications

    You can also search for this author in PubMed Google Scholar

Editor information

Editors and Affiliations

  1. Zellenlehre, Universität Heidelberg, Im Neuenheimer Feld 230, D-69120, Heidelberg, Germany

    H.-Dietmar Behnke

  2. Department of Botany, University of Texas, 78713-7640, Austin, TX, USA

    Tom J. Mabry

Rights and permissions

Reprints and permissions

Copyright information

© 1994 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Downie, S.R., Palmer, J.D. (1994). Phylogenetic Relationships Using Restriction Site Variation of the Chloroplast DNA Inverted Repeat. In: Behnke, HD., Mabry, T.J. (eds) Caryophyllales. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-78220-6_9

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-78220-6_9

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-78222-0

  • Online ISBN: 978-3-642-78220-6

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics

Search

Navigation