Abstract
The capacity of a nucleic acid to bind actinomycin (AM) is a sensitive indicator of polynucleotide configuration. Double stranded DNA binds the antibiotic [for reviews see Reich and Goldberg, 1964, and Waring, 1968 (1)] whereas double-stranded RNA binds only poorly, if at all (Haselkorn, 1964). That double-stranded RNA has a slightly different configuration than double-stranded DNA has been shown by X-ray diffraction (Arnott, Wilkins, Fuller and Langridge, 1967). In addition, a hybrid polymer containing one strand DNA and the complementary strand RNA binds little, or no, AM. Again X-ray analysis has shown that this molecule possesses a slightly different configuration than bihelical DNA (Milman, Langridge and Chamberlin, 1967). Denatured DNA, or single-stranded DNA, binds only poorly. Thus, the studies herein summarized (Wells, 1969; Wells and Larson, 1970) were undertaken to determine if the AM-binding ability of synthetic polydeoxyribonucleotides could be used as a probe for secondary structure as previously suggested. Other studies (Wells and Blair, 1967; Langridge, 1969; Wells, 1970) have already indicated that the DNAs do not all possess identical structures.
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References
Arnott, S., Wilkins, M. H. F., Fuller, W., Langridge, R.: Molecular and crystal structures of double-helical RNA. J. molec. Biol. 27, 535 (1967).
Bhuyan, B. K., Smith, C. G.: Differential interaction of nogalamycin with DNA of varying base composition. Proc. nat. Acad. Sci. (Wash.) 54, 566 (1965).
Byrd, C., Ohtsuka, E., Moon, M. W., Khorana, H. G.: Synthetic deoxyribooligonucleo- tides as templates for the DNA polymerase of E. coli: New DNA-like polymers containing repeating nucleotide sequences. Proc. nat. Acad. Sci. (Wash.) 53, 79 (1965).
Cavalieri, L. F., Nemchin, R. G.: The binding of actinomycin D and F to bacterial DNA. Biochim. biophys. Acta (Amst.) 166, 722 (1968).
Cerami, A., Reich, E., Ward, D. C., Goldberg, I. H.: The interaction of actinomycin with DNA: Requirement for the 2-amino group of purines. Proc. nat. Acad. Sci. (Wash.) 57, 1036 (1967).
Danyluk, S. S., Victor, T. A.: The structure and molecular interactions of actinomycin D. In: Quantum aspects of heterocyclic compounds in chemistry and biochemistry (Bergman, E. D., Pullman, B., Eds.) (1970) (in press).
Gellert, M., Smith, C. E., Neville, D., Felsenfeld, G.: Actinomycin binding to DNA: Mechanism and specificity. J. molec. Biol. 11, 445 (1965).
Goldberg, I. H., Rabinowitz, M.: Actinomycin D inhibition of deoxyribonucleic acid- dependent synthesis of ribonucleic acid. Science 136, 315 (1962).
Goldberg, I. H., Reich, E.: Basis of actinomycin action, I. DNA binding and inhibition of RNA- polymerase synthetic reactions by actinomycin. Proc. nat. Acad. Sci. (Wash.) 48, 2094 (1962).
Grant, R. C., Harwood, S. J., Wells, R. D.: The synthesis and characterization of poly d(I-C) · poly d(I-C). J. Amer. chem. Soc. 90, 4474 (1968).
Hamilton, L. D., Fuller, W., Reich, E.: X-ray diffraction and molecular model building studies of the interaction of actinomycin with nucleic acids. Nature (Lond.) 198, 538 (1963).
Haselkorn, R.: Actinomycin D as a probe for nucleic acid secondary structure. Science 143, 682 (1964).
Hurwitz, J., Furth, J. J., Malamy, M., Alexander, M.: The role of deoxyribonucleic acid in ribonucleic acid synthesis, III The inhibition of the enzymatic synthesis of ribonucleic acid and deoxyribonucleic acid by actinomycin D and proflavin. Proc. nat. Acad. Sci. (Wash.) 48, 1222 (1962).
Hyman, R. W., Davidson, N.: The binding of actinomycin to crab dAT; the nature of the DNA binding site. Biochem. biophys. Res. Commun. 26, 116 (1967).
Inman, R. B.: Transitions of DNA homopolymers. J. molec. Biol. 9, 624 (1964).
Inman, R. B., Baldwin, R. L.: Helix-random coil transitions in DNA homopolymer pairs. J. molec. Biol. 8, 452 (1964).
Kahan, E., Kahan, F. M., Hurwitz, J.: The role of deoxyribonucleic acid in ribonucleic acid synthesis. VI. Specificity of action of actinomycin D. J. biol. Chem. 238, 2491 (1963).
Kersten, W., Kersten, H., Szybalski, W.: Physicochemical properties of complexes between deoxyribonucleic acid and antibiotics which affect ribonucleic acid synthesis. Biochemistry 5, 236 (1966).
Langridge, R.: Nucleic acids and polynucleotides. J. Cell Physiol. 74, 1 (1969).
Milman, G., Langridge, R., Chamberlin, M. J.: The structure of a DNA-RNA hybrid. Proc. nat. Acad. Sci. (Wash.) 57, 1804 (1967).
Mitsui, Y., Langridge, R., Wells, R. D.: Poly d(I-C): An unusual double helical DNA. Acta Cryst. 25, 177 (1969).
Morgan, A. R., Wells, R. D.: Specificity of the three-stranded complex formation between double-stranded DNA and single-stranded RNA containing repeating nucleotide sequences. J. molec. Biol. 37, 63 (1968).
Müller, W., Crothers, D. M.: Studies of the binding of actinomycin and related compounds to DNA. J. molec. Biol. 35, 251 (1968).
Radding, C. M., Josse, J., Kornberg, A.: Enzymatic synthesis of deoxyribonucleic acid. XII. A polymer of deoxyguanylate and deoxycytidylate. J. biol. Chem. 237, 2869 (1962).
Reich, E., Goldberg, I. H.: Actinomycin and nucleic acid function. In: Progress in nucleic acid research and molecular biology 3, p. 183. New York: Academic Press, Inc. 1964.
Reich, E., Cerami, A., Ward, D. C.: Actinomycin (Gottlieb, D., Shaw, P. D., Eds.). Antibiotics 1, 714 (1967).
Rich, A.: The molecular structure of polyinosinic acid. Biochim. biophys. Acta (Amst.) 29, 502 (1958).
Scatchard, G.: The attractions of proteins for small molecules and ions. Ann. N. Y. Acad. Sci. 51, 660 (1949).
Schachman, H. K., Adler, J., Radding, C. M., Lehman, I. R., Kornberg, A.: Enzymatic synthesis of deoxyribonucleic acid VII. Synthesis of a polymer of deoxyadenylate and deoxythymidylate. J. biol. Chem. 235, 3242 (1960).
Waring, M. J.: (1) Drugs which affect the structure and function of DNA. Nature (Lond.) 219, 1320 (1968).
Waring, M. J.: (2) Uncoiling of bacteriophage φ × 174 replicative form deoxyribonucleic acid byethidium, daunomycin and actinomycin. Biochem. J. 109, 28 (1968).
Wells, R. D.: Actinomycin binding to DNA: Inability of a DNA containing guanine to bind actinomycin D. Science 165, 75 (1969).
Wells, R. D.: Studies on the effect of nucleotide sequence on DNA physicochemical properties. 8th International Congress of Biochemistry, Switzerland, September 1970.
Wells, R. D., Blair, J. E.: Studies on polynucleotides. LXXI. Sedimentation and buoyant density studies of some DNA-like polymers with repeating nucleotide sequences. J. molec. Biol. 27, 273 (1967).
Wells, R. D., Larson, J. E.: Studies on the binding of actinomycin D to DNA and DNA model polymers. J. molec. Biol. 49, 319 (1970).
Wells, R. D., Ohtsuka, E., Khorana, H. G.: Studies on polynucleotides. L. Synthetic deoxyribo- polynucleotides as templates for the DNA polymerase of Escherichia coli A new double- stranded DNA-like polymer containing repeating dinucleotide sequences. J. molec. Biol. 14, 221 (1965).
Wells, R. D., Jacob, T. M., Narang, S. A., Khorana, H. G.: (1) Studies on polynucleotides. LXIX. Synthetic deoxyribopolynucleotides as templates for the DNA polymerase of Escherichia coli: DNA-like polymers containing repeating trinucleotide sequences. J. molec. Biol. 27, 237 (1967).
Wells, R. D., Büchi, H., Kössel, H., Ohtsuka, E., Khorana, H. G.: (2) Studies on polynucleotides. LXX. Synthetic deoxyribopolynucleotides as templates for the DNA polymerase of Escherichia coli: DNA-like polymers containing repeating tetranucleotide sequences. J. molec. Biol. 27, 265 (1967).
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Wells, R.D. (1971). The Binding of Actinomycin D to DNA. In: Hahn, F.E. (eds) Proceedings of the Research Symposium on Complexes of Biologically Active Substances with Nucleic Acids and Their Modes of Action. Progress in Molecular and Subcellular Biology, vol 2. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-65141-0_3
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DOI: https://doi.org/10.1007/978-3-642-65141-0_3
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