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Genotyping of the Most Common Thiopurine Methyltransferase Mutations with the LightCycler

Optimization of Hybridization Probe Assays for the Detection of Mutations Causing Stable Mismatches in DNA Duplexes

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Rapid Cycle Real-Time PCR

Abstract

Thiopurine derivatives are commonly used for immunosuppressive therapy after organ transplantation (azathioprine) and in the therapy of leukemia (mercaptopurine and thioguanine). Their pharmacological efficacy is based on an in vivo toxification pathway that ultimately leads to 6-thioguanine nucleotides, which act as anti-metabolites and interfere with nucleic acid synthesis [1]. Two detoxification pathways are known, one via xanthine oxidase, a stably abundant enzyme in the Caucasian population, and the second via thiopurine methyltransferase (TPMT, EC.2.1.1.67). The latter enzyme is subject to a genetic polymorphism, that in 11% of the Caucasian population leads to a heretozygous deficiency and in 0.3% to a homozygous deficiency of this enzyme [3, 4, 6]. If patients with a homozygous deficiency of TPMT are given thiopurines at the usual dosage, this will lead to a severe myelosuppression [9, 10] often with life-threatening pancytopenia [5]. Phenotyping of this enzyme is possible [2], but the method is laborious and technically demanding; it is therefore only performed in specialized laboratories. Genotyping of this defect is, on the other hand, hampered by the fact that to date eight mutation are known [11–13] that lead to a deficient phenotype (Fig. 1). Around 90% of TPMT deficiencies can be attributed to one of these known mutations.

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References

  1. Ellion GB (1989) The purine path to chemotherapy. Science 244: 41–53

    Article  Google Scholar 

  2. Weinshilboum RM, Raymond FA, Pazmino PA (1978) Human erythrocyte thiopurine methyltransferase: radiochemical microassay and biochemical properties. Clin Chim Acta 85: 323–333

    Article  PubMed  CAS  Google Scholar 

  3. Weinshilboum RM, Sladeck SL (1980) Mercaptopurine pharmacogenetics: monogenetic inheritance of erythrocyte thiopurine methyltransferase activity. Am J Hum Genet 32: 651–662

    PubMed  CAS  Google Scholar 

  4. McLeod HL, Lin JS, Scott EP, Pui CH, Evans WE (1994) Thiopurine methyltransferase activity in American white and black subjects. Clin Pharmacol Ther 55: 15–20

    Article  PubMed  CAS  Google Scholar 

  5. Schütz E, Gummert J, Mohr FW, Oellerich M (1993) Azathioprine induced myelosuppression in thiopurine methyltransferase deficient heart transplant recipient. Lancet 341: 426

    Article  Google Scholar 

  6. Schütz E, Gummert J, Armstrong VW, Mohr FW, Oellerich M (1996) Azathiorpine Pharmacogenetics: the relationship between 6-thioguanine nucleotides and thiopurine methyltransferase in patients after heart and kidney transplantation. Eur J Clin Chem Clin Biochem 34: 199–205

    PubMed  Google Scholar 

  7. Schütz E, Pickenpack A, Lang B, Oellerich M (1999) Pharmocokinetics of 6-thioguanine nucleotides under i.v. therapy with azathioprine. Ther Drug Monit 21: 476 [Abstract]

    Article  Google Scholar 

  8. Schütz E, von Ahsen N (1999) A simple and versatile standard spreadsheet software for the thermodynamic melting point prediction for oligonucleotide hybridization with and without mismatches. Biotechniques 27: 1218–1224

    PubMed  Google Scholar 

  9. Lennard L, Gibson BES, Nicole T, Lilleyman JS (1993) Congenital thiopurine methyltransferase deficiency and 6-mercaptopurine toxicity during treatment for acute lymphoblastic leukaemia. Arch Dis Child 69: 577–579

    Article  PubMed  CAS  Google Scholar 

  10. l0.Leipold G, Schütz E, Haas JP, Oellerich M (1997) Azathioprine-induced severe pancytopenia due to a homozygous two-point mutation of the thiopurine methyltransferase gene in a patient with juvenile HLA-B27-associated spondylarthritis. Athritis Rheum 40: 1896–1898

    Article  Google Scholar 

  11. Krynetski EY, Schuetz JD, Galpin AJ, Pui CH, Belling MV, Evans WE (1995) A single point mutation leading to loss of catalytic activity in human thiopurine methyltransferase. PNAS 92: 949–953

    Article  PubMed  CAS  Google Scholar 

  12. Tai HL, Krynetski EY, Yates CR, Loennechen T, Fessing MY, Krynetskaia NF et al (1996) Thiopurine-S-methyltransferase deficiency: two nucleotide transitions define the most prevalent mutant allele associated with loss of catalytic activity in Caucasians. Am J Hum Genet 58: 694–702

    PubMed  CAS  Google Scholar 

  13. Otterness C, Szumlanski C, Lennard L, Klemetsdal B, Aarbakke J, Park-Hah JO et al (1997) Human thiopurine methyltransferase pharmacogenetics: gene sequence polymorphisms. Clin Pharmacol Ther 62: 60–73

    Article  PubMed  CAS  Google Scholar 

  14. Lee D, Szumlanski C, Houtman J, Honchel R, Rojas K, Overhauser J et al (1995) Thiopurine methyltransferase pharmacogenetics: Cloning of liver cDNA and a processed pseudogene on human chromosome 18821.1. Drug Metab Dispos 23; 398–405

    PubMed  CAS  Google Scholar 

  15. Sandborn WJ, V. Os EC, Zins BJ, Tremaine J, Mays DC, Lipsky JJ (1995) An intravenous loading dose of azathioprine decreases the time to response in patients with Crohn’s disease. Gastroenterology 109: 1808–1817

    Article  PubMed  CAS  Google Scholar 

  16. Bernard PS, Pritham GH, Wittwer CT (1999) Color multiplexing hybridization probes Using the apolipoprotein E locus as a model system for genotyping. Anal Biochem 273: 221–228

    CAS  Google Scholar 

  17. von Ahsen N, Oellerich M, Armstrong VW, Schütz E (1999) Application of a thermodynamic nearest-neighbor model to estimate nucleic acid stability and optimize probe design: prediction of melting points of multiple mutations of apolipoprotein B-3500 and factor V with a hybridization probe genotyping assay on the LightCycler. Clin Chem 45: 2094–2101

    Google Scholar 

  18. von Ahsen N, Oellerich M, Schütz E (2000) Using two reporter dyes without interference in a single tube rapid cycler PCR: alphal-antitrypsin genotyping by multiplex real-time fuorescence PCR with the LightCycler. Clin Chem 46: 156–161

    Google Scholar 

  19. Schütz E, von Ahsen N, Oellerich M (2000) Genotyping of eight Thiopurine Methyltransferase mutations: Three-Color multiplexing, “Two-Color/shared” anchor and fluorescence-quenching hybridization probe assays based on thermodynamic nearest-neighbor probe design Clin Chem 46: 1728–37 )

    Google Scholar 

  20. von Ahsen N, Oellerich M, Schütz E (2000) DNA base bulge vs unmatched end formation in probe-based diagnostic insertion/deletion genotyping: Genotyping the UGT lAl (TA)„ polymorphism by real-time fluorescence PCR Clin Chem 46 (12: in press)

    Google Scholar 

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Schütz, E., von Ahsen, N. (2001). Genotyping of the Most Common Thiopurine Methyltransferase Mutations with the LightCycler. In: Meuer, S., Wittwer, C., Nakagawara, KI. (eds) Rapid Cycle Real-Time PCR. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-59524-0_17

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  • DOI: https://doi.org/10.1007/978-3-642-59524-0_17

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-66736-0

  • Online ISBN: 978-3-642-59524-0

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