Skip to main content

Interaction-Based Cloning of Novel Proteins

  • Chapter
Cell Cycle — Materials and Methods

Part of the book series: Springer Lab Manual ((SLM))

Abstract

It has become evident that interactions between proteins are the underlying mechanism of basic biological processes such as signal transduction, transcription, cell cycle progression, etc. For example, during the cell cycle, members of the Cdk family differentially interact with a number of cyclin regulatory subunits resulting in functionally distinct kinase complexes that regulate different stages of cell cycle progression (Draetta 1990; Sherr 1993). The cyclin/Cdk complexes contain other proteins that regulate their kinase activity (Xiong et al. 1993). Since these proteins form stable complexes, they are extremely amenable to interaction-based cloning using the two-hybrid system. The power of this approach has been well demonstrated recently by the interaction cloning of a battery of new cell cycle regulators such as p16Ink4 (Serrano et al. 1993), p21Cip1 (Harper et al. 1993), p130 (Hannon et al. 1993), and Cdi1l/Kap (Gyuris et al. 1993; Hannon et al. 1994). In most cases, their presence in cyclin/cdk complexes had been detected previously by immunoprecipitation (Xiong et al. 1993).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Ausubel FM, Brent R, Kingston R, Moore D, Seidman JS, Struhl K (1987–1994) Current protocols in molecular biology. John Wiley & Sons New York

    Google Scholar 

  • Breeden L, Nasmyth K (1985) Regulation of the yeast HO gene. Cold Spring Harbor Symp Quant Biol 50:643–650

    Article  PubMed  CAS  Google Scholar 

  • Brent R, Ptashne M (1985) A eukaryotic transcriptional activator bearing the DNA specificity of a prokaryotic repressor. Cell 43:729–736

    Article  PubMed  CAS  Google Scholar 

  • Cadwell C, Joyce G (1992) Randomization of genes by PCR mutagenesis. PCR Methods and Applications 2:38–33

    Article  Google Scholar 

  • Chien CT, Bartel PL, Sternglanz R, Fields S (1991) The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc Natl Acad Sci USA 88:9578–9582

    Article  PubMed  CAS  Google Scholar 

  • Chiu I, Katz H, Berlin V (1994) RAPT1, a mammalian homolog of the yeast TOR, interacts directly with the FKB12/rapamycin complex. Proc Natl Acad Sci 91:12574–12578

    Article  PubMed  CAS  Google Scholar 

  • Dalton S, Treisman R (1992) Characterization of SAP-1, a protein recruited by serum response factor to the c-fos serum response element. Cell 68:597–612

    Article  PubMed  CAS  Google Scholar 

  • Draetta G (1990) Cell cycle control in eukaryotes: molecular mechanisms of cdc2 activation. Trends Biochem Sci 15:378–382

    Article  PubMed  CAS  Google Scholar 

  • Fields S, Song O (1989) A novel genetic system to detect protein-protein interaction. Nature 340:245–246

    Article  PubMed  CAS  Google Scholar 

  • Gietz D, St Jean A, Woods RA, Schiestl RH (1992) Improved method for high efficiency transformation of intact yeast cells. Nucl Acid Res 20:1425

    Article  CAS  Google Scholar 

  • Green N, Alexander H, Olson A, Alexander S, Shinnick TM, Sutcliffe JG, Lerner RA (1982) Immunogenic structure of the influenza virus hemagglutinin. Cell 28:477–487

    Article  PubMed  CAS  Google Scholar 

  • Gyuris J. Golemis E, Chertkov H, Brent R (1993) Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2. Cell 75:791–803

    Article  PubMed  CAS  Google Scholar 

  • Hannon G, Demetrick D, Beach D (1993) Isolation of the Rb-related p130 through its interaction with Cdk2 and cyclins. Genes & Development 7:2378–2391

    Article  CAS  Google Scholar 

  • Hannon G, Casso D, Beach D (1994) KAP: a dual specificity phosphatase that interacts with cyclin-dependent kinases. Proc Natl Acad Sci 91:1731–1735

    Article  PubMed  CAS  Google Scholar 

  • Harper JW, Adami GR, Wei N, Keyomarsi K, Elledge SJ (1993) The p21 Cdk-interacting protein Cip1 is a potent inhibitor of G1 Cyclin-dependent kinases. Cell 75:805–816

    Article  PubMed  CAS  Google Scholar 

  • Hoffman CS, Winston F (1987) A ten minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of E. coli. Gene 57:267–272

    Article  PubMed  CAS  Google Scholar 

  • Kalderon D, Roberts BL, Richardson WD, Smith AE (1984) A short amino acid sequence able to specify nuclear localization. Cell 39:499–509

    Article  PubMed  CAS  Google Scholar 

  • Kamens J, Richardson P, Mosialos G, Brent R, Gilmore T (1990) Oncogenic transformation by vRel requires an amino-terminal activation domain. Mol Cell Biol 10:2840–2847

    PubMed  CAS  Google Scholar 

  • Lee JW, Ryan F, Swaffield JC, Johston SA, Moore DD (1994) Ligand-dependent interaction of a thyroid and retinoic X receptors with a new member of a conserved family of ATPases. Nature 374:91–94

    Article  Google Scholar 

  • Ma J, Ptashne M (1987) A new class of yeast transcriptional activators. Cell 51:113–119

    Article  PubMed  CAS  Google Scholar 

  • Ma J, Ptashne M (1988) Converting a eukaryotic transcriptional inhibitor into an activator. Cell 55:443–446

    Article  PubMed  CAS  Google Scholar 

  • Oliner, JD, Pietenpol JA, Thiagalingam S, Gyuris J, Kinzler KW, Vogelstein B (1993) Oncoprotein MDM2 conceals the activation domain of tumor suppressor of p53. Nature 362:857–860

    Article  PubMed  CAS  Google Scholar 

  • Ruden DM, Ma J, Li Y, Wood K, Ptashne M (1991) Generating yeast transcriptional activators containing no yeast protein sequences. Nature 350:426–430

    Article  Google Scholar 

  • Schiestl RH, Gietz RD (1989) High efficiency transformation of intact yeast cells using single-stranded nucleic acids as a carrier. Curr Genet 16:339–346

    Article  PubMed  CAS  Google Scholar 

  • Serrano M, Hannon G, Beach D (1993) A new regulatory motif in cell cycle control causing specific inhibition of cyclin D/CDK4. Nature 366:704–707

    Article  PubMed  CAS  Google Scholar 

  • Sherr CJ (1993) Mammalian G1 cyclins. Cell 73:1059–1065

    Article  PubMed  CAS  Google Scholar 

  • Triezenberg SJ, LaMarco KL, McKnight SL (1988) Evidence of DNA:protein interactions that mediate HSV1-immediate early gene acitivation by VP16. Genes Dev 2:730–742

    Article  PubMed  CAS  Google Scholar 

  • Vojtek AB, Hollenberg SM, Cooper JA (1993) Mammalian Ras interacts directly with the serine/threonine kinase Raf. Cell 74:205–214

    Article  PubMed  CAS  Google Scholar 

  • Xiong Y, Zhang H, Beach D (1993) Subunit rearrangement of the cyclin-dependent kinasesis is associated with cellular transformation. Genes Dev 7:1572–1583

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1996 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Fiore, F., Lamphere, L., Gyuris, J. (1996). Interaction-Based Cloning of Novel Proteins. In: Pagano, M. (eds) Cell Cycle — Materials and Methods. Springer Lab Manual. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-57783-3_19

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-57783-3_19

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-58066-9

  • Online ISBN: 978-3-642-57783-3

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics