Skip to main content

Molecular Systematics: 1997–1999

  • Chapter
Progress in Botany

Part of the book series: Progress in Botany ((BOTANY,volume 62))

Abstract

During the period of our last review of plant molecular systematics (in Progress in Botany, Volume 58; Sytsma and Hahn 1996), which covered 1994–1995, we indicated a number of areas that should emerge as important issues in the field of molecular systematics:

  1. 1.

    The analysis of DNA data

  2. 2.

    The search for alternative genes or DNA regions

  3. 3.

    Co-evolutionary studies using molecules to track the evolution of the different organisms involved

  4. 4.

    The interfacing of developmental genetics and phylogenetic systematics to understand morphological evolution

  5. 5.

    Adaptive radiations

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 259.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 329.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Aceto S, Caputo P, Cozzolino S, Gaudio L, Moretti A (1999) Phylogeny and evolution of Orchis and allied genera based on ITS DNA variation: morphological gaps and molecular continuity. Mol Phylogenet Evol 13:67–76

    PubMed  CAS  Google Scholar 

  • Adams RP, Zhong M, Fei Y (1999) Preservation of DNA in plant specimens: inactivation and re-activation of DNases in field specimens. Mol Ecol 8:681–683

    CAS  Google Scholar 

  • Aguilar JF, Rossello JA, Feliner GN (1999) Nuclear ribosomal DNA (nrDNA) concerted evolution in natural and artificial hybrids of Armeria (Plumbaginaceae). Mol Ecol 8:1341–1346

    Google Scholar 

  • Albert VA, Gustafsson MHG, Di Laurenzio L (1998) Ontogenetic systematics, molecular developmental genetics, and the angiosperm petal. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer, Norwell, MA, pp 349–374

    Google Scholar 

  • Alverson WS, Karol KG, Baum DA, Chase MW, Swensen SM, McCourt R, Sytsma KJ (1998) Circumscription of the Malvales and relationships to other Rosidae — evidence from rbcL sequence data. Am J Bot 85:876–887

    PubMed  CAS  Google Scholar 

  • Alverson WS, Whitlock BA, Nyffeler R, Bayer C, Baum DA (1999) Phylogeny of the core Malvales: evidence from ndhF sequence data. Am J Bot 86:1474–1486

    PubMed  CAS  Google Scholar 

  • Andersson L, Rova JHE (1999) The rpsl6 intron and the phylogeny of the Rubioideae (Rubiaceae). Plant Syst Evol 214:161–186

    Google Scholar 

  • Angiosperm Phylogeny Group (1998) An ordinal classification for the families of flowering plants. Ann Mo Bot Garden 85:531–553

    Google Scholar 

  • Avise JC (1998) The history and purview of phylogeography — a personal reflection. Mol Ecol 7:371–379

    Google Scholar 

  • Azuma H, Thien LB, Kawano S (1999) Molecular phylogeny of Magnolia (Magnoliaceae) inferred from cpDNA sequences and evolutionary divergence of the floral scents. J Plant Res 112:291–306

    CAS  Google Scholar 

  • Backlund A, Bremer B (1997) Phylogeny of the Asteridae s. str. based on rbcL sequences, with particular reference to the Dipsacales. Plant Syst Evol 207:225–254

    Google Scholar 

  • Bailey CD, Doyle JJ (1999) Potential phylogenetic utility of the low-copy nuclear gene pistillata in dicotyledonous plants: comparison to nrDNA ITS and trnL intron in Sphaerocardamum and other Brassicaceae. Mol Phylogenet Evol 13:20–30

    PubMed  CAS  Google Scholar 

  • Baker WJ, Asmussen CB, Barrow SC, Dransfield J, Hedderson TA (1999) A phylogenetic study of the palm family (Palmae) based on chloroplast DNA sequences from the trnL-trnF region. Pl Syst Evol 219:111–126

    CAS  Google Scholar 

  • Bakker FT, Hellbrugge D, Culham A, Gibby M (1998) Phylogenetic relationships within Pelargonium sect. Peristera (Geraniaceae) inferred from nrDNA and cpDNA sequence comparisons. Plant Syst Evol 211:273–287

    CAS  Google Scholar 

  • Bakker FT, Culham A, Daugherty LC, Gibby M (1999) A trnL-F based phylogeny for species of Pelargonium (Geraniaceae) with small chromosomes. Plant Syst Evol 216:309–324

    CAS  Google Scholar 

  • Baldwin BG (1997) Adaptive radiation of the Hawaiian silversword alliance: congruence and conflict of phylogenetic evidence from molecular and non-molecular investigations. In: Givnish TJ, Sytsma KJ (eds) Molecular evolution and adaptive radiation. Cambridge University, Cambridge, pp 103–128

    Google Scholar 

  • Baldwin BG, Markos S (1998) Phylogenetic utility of the external transcribed spacer (ETS) of 18S–26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae). Mol Phylogenet Evol 10:449–463

    PubMed  CAS  Google Scholar 

  • Baldwin BG, Crawford DJ, Francisco-Ortega J, Kim S-C, Sang T, Stuessy TF (1998) Molecular phylogenetic insights on the origin and evolution of oceanic island plants. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA, pp 410–441

    Google Scholar 

  • Ballard HE, Sytsma KJ, Kowal RR (1998) Shrinking the violets: Phylogenetic relationships of infrageneric groups in Viola (Violaceae) based on internal transcribed spacer DNA sequences. Syst Bot 23:439–458

    Google Scholar 

  • Barrett SCH, Graham SW (1997) Adaptive radiation in the aquatic plant family Pontederiaceae: insights from phylogenetic analysis. In: Givnish TJ, Sytsma KJ (eds) Molecular evolution and adaptive radiation. Cambridge University, Cambridge, pp 225–258

    Google Scholar 

  • Barrier M, Baldwin BG, Robichaux RH, Purugganan MD (1999) Interspecific hybrid ancestry of a plant adaptive radiation: allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications. Mol Biol Evol 16:1105–1113

    PubMed  CAS  Google Scholar 

  • Baum DA (1998) The evolution of plant development. Curr Opin Plant Biol 1:79–86

    PubMed  CAS  Google Scholar 

  • Baum DA, Small RL, Wendel JF (1998) Biogeography and floral evolution of baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets. Syst Biol 47:181–207

    PubMed  CAS  Google Scholar 

  • Bayer RJ, Starr JR (1998) Tribal phylogeny of the Asteraceae based on two non-coding chloroplast sequences, the trnL intron and trnL/trnF intergenic spacer. Ann Mo Bot Garden 85:242–256

    Google Scholar 

  • Beckert S, Steinhauser S, Muhle H, Knoop V (1999) A molecular phylogeny of bryophytes based on nucleotide sequences of the mitochondrial nad5 gene. Plant Syst Evol 218:179–192

    CAS  Google Scholar 

  • Beismann H, Barker JHA, Karp A, Speck T (1997) AFLP analysis sheds light on distribution of two Salix species and their hybrid along a natural gradient. Mol Ecol 6:989–993

    CAS  Google Scholar 

  • Bennetzen JL (1998) The structure and evolution of angiosperm nuclear genomes. Curr Opin Plant Biol 1:103–108

    PubMed  CAS  Google Scholar 

  • Bharathan G, Janssen BJ, Kellogg EA, Sinha N (1999) Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins. Mol Biol Evol 16:553–563

    PubMed  CAS  Google Scholar 

  • Blake NK, Lehfeldt BR, Lavin M, Talbert LE (1999) Phylogenetic reconstruction based on low copy DNA sequence data in an allopolyploid: the B genome of wheat. Genome 42:351–360

    PubMed  CAS  Google Scholar 

  • Blattner FR, Kadereit JW (1999) Morphological evolution and ecological diversification of the forest-dwelling poppies (Papaveraceae: Chelidonioideae) as deduced from a molecular phylogeny of the ITS region. Plant Syst Evol 219:181–197

    CAS  Google Scholar 

  • Bohlmann J, Meyergauen G, Croteau R (1998) Plant terpenoid synthases — molecular biology and phylogenetic analysis. Proc Natl Acad Sci USA 95:4126–4133

    PubMed  CAS  Google Scholar 

  • Boutilier K, Hattori J, Baum BR, Miki BL (1999) Evolution of 2S albumin seed storage protein genes in the Brassicaceae. Biochem Syst Ecol 27:223–234

    CAS  Google Scholar 

  • Bremer B, Jansen RK, Oxelman B, Backlund M, Lantz H, Kim KJ (1999) More characters or more taxa for a robust phylogeny — case study from the coffee family (Rubiaceae). Syst Biol 48:413–435

    PubMed  CAS  Google Scholar 

  • Brochmann C, Xiang QY, Brunsfeld SJ, Soltis DE, Soltis PS (1998) Molecular evidence for polyploid origins in Saxifraga (Saxifragaceae) — the narrow arctic endemic S. svalbardensis and its widespread allies. Am J Bot 85:135–143

    PubMed  CAS  Google Scholar 

  • Brubaker CL, Paterson AH, Wendel JF (1999) Comparative genetic mapping of allotetraploid cotton and its diploid progenitors. Genome 42:184–203

    CAS  Google Scholar 

  • Bruneau A (1997) Evolution and homology of bird pollination syndromes in Erythrina (Leguminosae). Am J Bot 84:54–71

    Google Scholar 

  • Burke JM, Voss TJ, Arnold ML (1998) Genetic interactions and natural selection in Louisiana Iris hybrids. Evolution 52:1304–1310

    Google Scholar 

  • Camacho FJ, Gernandt DS, Liston A, Stone JK, Klein AS (1997) Endophytic fungal DNA, the source of contamination in spruce needle DNA. Mol Ecol 6:983–987

    CAS  Google Scholar 

  • Cameron KM, Chase MW (1999) Phylogenetic relationships of Pogoniinae (Vanilloideae, Orchidaceae): an herbaceous example of the eastern North America-eastern Asia phytogeographic disjunction. J Plant Res 112:317–329

    Google Scholar 

  • Cameron KM, Chase MW, Whitten WM, Kores PJ, Jarrell DC, Albert VA, Yukawa T, Hills HG, Goldman DH (1999) A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences. Am J Bot 86:208–224

    PubMed  Google Scholar 

  • Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ (1997) Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Mol Biol Evol 14:81–90

    PubMed  CAS  Google Scholar 

  • Castillo RO, Spooner DM (1997) Phylogenetic relationships of wild potatoes, Solanum series Conicibaccata (sect. Petota). Syst Bot 22:45–83

    Google Scholar 

  • Chapman RL, Buchheim MA, Delwiche CF, Friedl T, Huss VAR, Karol KG, Lewis LA, Manhart J, McCourt RM, Olsen JL, Waters DA (1998) Molecular systematics of the green algae. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants II: DNA sequencing. Kluwer Academic, Norwell, MA, pp 509–540

    Google Scholar 

  • Charleston MA, Page RDM (1999) Spectral analysis — a brief introduction. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor and Francis, London, pp 255–267

    Google Scholar 

  • Charlesworth D, Liu FL, Zhang L (1998) The evolution of the alcohol dehydrogenase gene family by loss of introns in plants of the genus Leavenworthia (Brassicaceae). Mol Biol Evol 15:552–559

    PubMed  CAS  Google Scholar 

  • Chase MW, Albert VA (1998) A perspective on the contribution of plastid rbcL DNA sequences to angiosperm phylogenetics. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants II: DNA sequencing. Kluwer Academic, Norwell, MA, pp 488–507

    Google Scholar 

  • Chase MW, Cox AV (1998) Gene sequences, collaboration and analysis of large data sets. Aust Syst Bot 11:215–229

    Google Scholar 

  • Chase MW, Morton CM, Kallunki JA (1999) Phylogenetic relationships of Rutaceae: a cladistic analysis of the subfamilies using evidence from rbcL and atpB sequence variation. Am J Bot 86:1191–1199

    PubMed  CAS  Google Scholar 

  • Chaw SM, Zharkikh A, Sung HM, Lau TC, Li WH (1997) Molecular phylogeny of extant gymnosperms and seed plant evolution — analysis of nuclear 18S rRNA sequences. Mol Biol Evol 14:56–68

    PubMed  CAS  Google Scholar 

  • Chen ZD, Manchester SR, Sun HY (1999) Phylogeny and evolution of the Betulaceae as inferred from DNA sequences, morphology, and paleobotany. Am J Bot 86:1168–1181

    PubMed  CAS  Google Scholar 

  • Civeyrel L, Le Thomas A, Ferguson K, Chase MW (1998) Critical reexamination of palynological characters used to delimit Asclepiadaceae in comparison to the molecular phylogeny obtained from plastid matK sequences. Mol Phylogenet Evol 9:517–527

    PubMed  CAS  Google Scholar 

  • Comes HP, Kadereit JW, Pohl A, Abbott RJ (1997) Chloroplast DNA and isozyme evidence on the evolution of Senecio vulgaris (Asteraceae). Plant Syst Evol 206:375–392

    Google Scholar 

  • Compton JA, Culham A, Jury SL (1998) Reclassification of Actaea to include Cimicifuga and Souliea (Ranunculaceae): phylogeny inferred from morphology, nrDNA ITS, and cpDNA trnL-F sequence variation. Taxon 47:593–634

    Google Scholar 

  • Conti E, Litt A, Wilson PG, Graham SA, Briggs BG, Johnson LAS, Sytsma KJ (1997) Interfamilial relationships in Myrtales: molecular phylogeny and patterns of morphological evolution. Syst Bot 22:629–647

    Google Scholar 

  • Cook LM, Soltis PS, Brunsfeld SJ, Soltis DE (1998) Multiple independent formations of Tragopogon tetraploids (Asteraceae): evidence from RAPD markers. Mol Ecol 7:1293–1302

    Google Scholar 

  • Cox AV, Pridgeon AM, Albert VA, Chase MW (1997) Phylogenetics of the slipper orchids (Cypripedioideae, Orchidaceae): nuclear rDNA ITS sequences. Plant Syst Evol 208:197–223

    Google Scholar 

  • Crisp MD, Appels R, Smith FM, Keys WMS (1999) Phylogenetic evaluation of 5S ribosomal RNA gene and spacer in the Callistachys group (Fabaceae: Mirbelieae). Plant Syst Evol 218:33–42

    CAS  Google Scholar 

  • Cronn R, Wendel JF (1998) Simple methods for isolating homologous loci from allopolyploid genomes. Genome 41:756–762

    CAS  Google Scholar 

  • Cronn RC, Small RL, Wendel JF (1999) Duplicated genes evolve independently after polyploid formation in cotton. Proc Natl Acad Sci USA 96:14406–14411

    PubMed  CAS  Google Scholar 

  • Cullings KW, Vogler DR (1998) A 5.8S nuclear ribosomal RNA gene sequence database -applications to ecology and evolution. Mol Ecol 7:919–923

    PubMed  CAS  Google Scholar 

  • Dayanandan S, Ashton PS, Williams SM, Primack RB (1999) Phylogeny of the tropical tree family Dipterocarpaceae based on nucleotide sequences of the chloroplast rbcL gene. Am J Bot 86:1182–1190

    PubMed  CAS  Google Scholar 

  • Denda T, Watanabe K, Kosuge K, Yahara T, Ito M (1999) Molecular phylogeny of Brachycome (Asteraceae). Plant Syst Evol 217:299–311

    CAS  Google Scholar 

  • Depamphilis CW, Young ND, Wolfe AD (1997) Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants — many losses of photosynthesis and complex patterns of rate variation. Proc Natl Acad Sci USA 94:7367–7372

    PubMed  CAS  Google Scholar 

  • Downie SR, Katzdownie DS, Cho KJ (1997) Relationships in the Caryophyllales as suggested by phylogenetic analyses of partial chloroplast DNA ORF2280 homolog sequences. Am J Bot 84:253–273

    PubMed  CAS  Google Scholar 

  • Downie SR, Ramanath S, Katzdownie DS, Llanas E (1998) Molecular systematics of Apiaceae subfamily Apioideae: phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacer and plastid rpoc1 intron sequences. Am J Bot 85:563–591

    PubMed  CAS  Google Scholar 

  • Doyle JJ, Doyle JL, Ballenger JA, Dickson EE, Kajita T, Ohashi H (1997) A phylogeny of the chloroplast gene rbcL in the Leguminosae. Taxonomic correlations and insights into the evolution of nodulation. Am J Bot 84:541–554

    PubMed  CAS  Google Scholar 

  • Doyle JJ, Doyle JL, Brown AHD (1999) Incongruence in the diploid B-genome species complex of glycine (Leguminosae) revisited: histone H3-D alleles versus chloroplast haplotypes. Mol Biol Evol 16:354–362

    PubMed  CAS  Google Scholar 

  • Duff RJ, Nickrent DL (1999) Phylogenetic relationships of land plants using mitochondrial small-subunit rDNA sequences. Am J Bot 86:372–386

    PubMed  CAS  Google Scholar 

  • Dumolin-Lapegue S, Kremer A, Petit RJ (1999) Are chloroplast and mitochondrial DNA variation species independent in oaks? Evolution 53:1406–1413

    Google Scholar 

  • Ellstrand NC, Prentice HC, Hancock JF (1999) Gene flow and introgression from domesticated plants into their wild relatives. Annu Rev Ecol Syst 30:539–563

    Google Scholar 

  • Emshwiller E, Doyle JJ (1999) Chloroplast-expressed glutamine synthetase (ncpGS): potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae). Mol Phylogenet Evol 12:310–319

    PubMed  CAS  Google Scholar 

  • Eriksson T, Donoghue MJ (1997) Phylogenetic relationships of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on nuclear ribosomal ITS sequences and preliminary morphological data. Syst Bot 22:555–573

    Google Scholar 

  • Ferguson DM (1998) Phylogenetic analysis and relationships in Hydrophyllaceae based on ndhF sequence data. Syst Bot 23:253–268

    Google Scholar 

  • Ferris C, King RA, Hewitt GM (1999) Isolation within species and the history of glacial refugia. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor and Francis, London, pp 20–34

    Google Scholar 

  • Ford VS, Gottlieb LD (1999) Molecular characterization of PgiC in a tetraploid plant and its diploid relatives. Evolution 53:1060–1067

    CAS  Google Scholar 

  • Francisco-Ortega J, Crawford DJ, Santos-Guerra A, Jansen RK (1997a) Origin and evolution of Argyranthemum (Asteraceae: Anthemideae) in Macaronesia. In: Givnish TJ, Sytsma KJ (eds) Molecular evolution and adaptive radiation. Cambridge University, Cambridge, pp 407–431

    Google Scholar 

  • Francisco-Ortega J, Santosguerra A, Hines A, Jansen RK (1997b) Molecular evidence for a Mediterranean origin of the Macaronesian endemic genus Argyranthemum (Asteraceae). Am J Bot 84:1595–1613

    PubMed  CAS  Google Scholar 

  • Francisco-Ortega J, Goertzen LR, Santos-Guerra A, Benabid A, Jansen RK (1999) Molecular systematics of the Asteriscus alliance (Asteraceae: Inuleae). I. Evidence from the internal transcribed spacers of nuclear ribosomal DNA. Syst Bot 24:249–266

    Google Scholar 

  • Freudenstein JV (1999) Relationships and character transformation in Pyroloideae (Ericaceae) based on ITS sequences, morphology, and development. Syst Bot 24:398–408

    Google Scholar 

  • Frohlich MW (1999) MADS about Gnetales. Proc Natl Acad Sci USA 96:8811–8813

    PubMed  CAS  Google Scholar 

  • Frohlich MW, Meyerowitz EM (1997) The search for flower homeotic gene homologs in basal angiosperms and Gnetales — a potential new source of data on the evolutionary origin of flowers. Int J Plant Sci 158:S131–S142

    CAS  Google Scholar 

  • Furman BJ, Grattapaglia D, Dvorak WS, Omalley DM (1997) Analysis of genetic relationships of Central American and Mexican pines using RAPD markers that distinguish species. Mol Ecol 6:321–331

    CAS  Google Scholar 

  • Galloway GL, Malmberg RL, Price RA (1998) Phylogenetic utility of the nuclear gene arginine decarboxylase — an example from Brassicaceae. Mol Biol Evol 15:1312–1320

    PubMed  CAS  Google Scholar 

  • Gill BS, Friebe B (1998) Plant cytogenetics at the dawn of the 21st century. Curr Opin Plant Biol 1:109–115

    PubMed  CAS  Google Scholar 

  • Givnish TJ (1997) Adaptive radiation and molecular systematics: issues and approaches. In: Givnish TJ, Sytsma KJ (eds) Molecular evolution and adaptive radiation. Cambridge University, Cambridge, p 1–54

    Google Scholar 

  • Givnish TJ, Sytsma KJ (1997a) Consistency, characters, and the likelihood of correct phylogenetic inference. Mol Phylogenet Evol 7:320–330

    PubMed  CAS  Google Scholar 

  • Givnish TJ, Sytsma KJ (1997b) Homoplasy in molecular vs. morphological data: the likelihood of correct phylogenetic inference. In: Givnish TJ, Sytsma KJ (eds) Molecular evolution and adaptive radiation. Cambridge University, Cambridge, pp 55–101

    Google Scholar 

  • Givnish TJ, Sytsma KJ (1997c) Molecular evolution and adaptive radiation. Cambridge University, Cambridge

    Google Scholar 

  • Givnish TJ, Sytsma KJ, Smith JF, Hahn WJ, Benzing DH, Burkhardt EM (1997) Molecular evolution and adaptive radiation in Brocchinia (Bromeliaceae: Pitcairnioideae) atop tepuis of the Guayana Shield. In: Givnish TJ, Sytsma KJ (eds) Molecular evolution and adaptive radiation. Cambridge University, Cambridge, pp 259–311

    Google Scholar 

  • Givnish TJ, Evans TM, Pires JC, Sytsma KJ (1999) Polyphyly and convergent morphological evolution in Commelinales and Commelinidae: Evidence from rbcL sequence data. Mol Phylogenet Evol 12:360–385

    PubMed  CAS  Google Scholar 

  • Gottlieb LD, Ford VS (1997) A recently silenced, duplicate Pgic locus in Clarkia. Mol Biol Evol 14:125–132

    PubMed  CAS  Google Scholar 

  • Graham SW, Kohn JR, Morton BR, Eckenwalder JE, Barrett SCH (1998) Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae. Syst Biol 47:545–567

    PubMed  CAS  Google Scholar 

  • Graybeal A (1998) Is it better to add taxa or characters to a difficult phylogenetic problem. Syst Biol 47:9–17

    PubMed  CAS  Google Scholar 

  • Gustafsson MHG, Albert VA (1999) Inferior ovaries and angiosperm diversification. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor and Francis, London, pp 403–431

    Google Scholar 

  • Hahn WJ, Sytsma KJ (1999) Molecular systematics and biogeography of the Southeast Asian genus Caryota (Palmae). Syst Bot 24:558–580

    Google Scholar 

  • Hansen A, Hansmann S, Samigullin T, Antonov A, Martin W (1999) Gnetum and the angiosperms: molecular evidence that their shared morphological characters are convergent, rather than homologous. Mol Biol Evol 16:1006–1009

    CAS  Google Scholar 

  • Hapeman JR, Inoue K (1997) Plant-pollinator interactions and floral radiation in Platanthera (Orchidaceae). In: Givnish TJ, Sytsma KJ (eds) Molecular evolution and adaptive radiation. Cambridge University, Cambridge, pp 433–454

    Google Scholar 

  • Harris SA (1999) RAPDs in systematics — a useful methodology? In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor and Francis, London, pp 211–228

    Google Scholar 

  • Hasebe M, Ando T, Iwatsuki K (1998) Intrageneric relationships of maple trees based on the chloroplast DNA restriction fragment length polymorphisms. J Plant Res 111:441–451

    CAS  Google Scholar 

  • Hershkovitz MA, Zimmer EA (1997) On the evolutionary origins of the cacti. Taxon 46:217–232

    Google Scholar 

  • Hershkovitz MA, Zimmer EA, Hahn WJ (1999) Ribosomal DNA sequences and angiosperm systematics. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor and Francis, London, pp 268–326

    Google Scholar 

  • Holland PWH (1999) The future of evolutionary developmental biology. Nature 402:C41–C44

    PubMed  CAS  Google Scholar 

  • Hollingsworth PM, Bateman RM, Gornall RJ (1999) Molecular systematics and plant evolution. Taylor and Francis, London

    Google Scholar 

  • Hoot SB, Douglas AW (1998) Phylogeny of the Proteaceae based on atpB and atpB-rbcL intergenic spacer region sequences. Aust Syst Bot 11:301–320

    Google Scholar 

  • Hoot SB, Kadereit JW, Blattner FR, Jork KB, Schwarzbach AE, Crane PR (1997) Data congruence and phylogeny of the Papaveraceae s.1. based on four data sets — atpB and rbcL sequences, trnK restriction sites, and morphological characters. Syst Bot 22:575–590

    Google Scholar 

  • Hoot SB, Magallon S, Crane PR (1999) Phylogeny of basal eudicots based on three molecular data sets: atpB, rbcL, and 18S nuclear ribosomal DNA sequences. Ann Mo Bot Garden 86:1–32

    Google Scholar 

  • Hopper SD, Fay MF, Rossetto M, Chase MW (1999) A molecular phylogenetic analysis of the bloodroot and kangaroo paw family, Haemodoraceae: taxonomic, biogeographic and conservation implications. Bot J Linn Soc 131:285–299

    Google Scholar 

  • Howarth DG, Gardner DE, Morden CW (1997) Phylogeny of Rubus subgenus Idaeobatus (Rosaceae) and its implications toward colonization of the Hawaiian Islands. Syst Bot 22:433–441

    Google Scholar 

  • Hsiao C, Jacobs SWL, Chatterton NJ, Asay KH (1999) A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear ribosomal DNA (ITS). Aust Syst Bot 11:667–688

    Google Scholar 

  • Huelsenbeck JP, Crandall KA (1997) Phylogeny estimation and hypothesis testing using maximum likelihood. Annu Rev Ecol Syst 28:437–466

    Google Scholar 

  • Jackson HD, Steane DA, Potts BM, Vaillancourt RE (1999) Chloroplast DNA evidence for reticulate evolution in Eucalyptus (Myrtaceae). Mol Ecol 8:739–751

    Google Scholar 

  • Jackson SA, Wang ML, Goodman HM, Jiang JM (1998) Application of fiber-FISH in physical mapping of Arabidopsis thaliana. Genome 41:566–572

    PubMed  CAS  Google Scholar 

  • Jansen RK, Wee JL, Millie D (1998) Comparative utility of chloroplast DNA restriction site and DNA sequence data for phylogenetic studies in plants. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, pp 87–100

    Google Scholar 

  • Jeandroz S, Roy A, Bousquet J (1997) Phylogeny and phylogeography of the circumpolar genus Fraxinus (Oleaceae) based on internal transcribed spacer sequences of nuclear ribosomal DNA. Mol Phylogenet Evol 7:241–251

    PubMed  CAS  Google Scholar 

  • Johnson LA, Soltis DE (1998) Assessing congruence: empirical examples from molecular data. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA, pp 297–348

    Google Scholar 

  • Johnson LA, Soltis DE, Soltis PS (1999) Phylogenetic relationships of Polemoniaceae inferred from 18S ribosomal DNA sequences. Plant Syst Evol 214:65–89

    Google Scholar 

  • Judd WS, Campbell CS, Kellogg EA, Stevens PF (1999) Plant systematics: a phylogenetic approach. Sinauer Associates, Sunderland

    Google Scholar 

  • Kadereit JW, Schwarzbach AE, Jork KB (1997) The phylogeny of Papaver s.l. (Papaveraceae) — polyphyly or monophyly? Plant Syst Evol 204:75–98

    Google Scholar 

  • Kajita T, Kamiya K, Nakamura K, Tachida H, Wickneswari R, Tsumura Y, Yoshimaru H, Yamazaki T (1998) Molecular phylogeny of Dipertocarpaceae in Southeast Asia based on nucleotide sequences of matK, trriL intron, and trriL-trriF intergenic spacer region in chloroplast DNA. Mol Phylogenet Evol 10:202–209

    PubMed  CAS  Google Scholar 

  • Kallersjo M, Albert VA, Farris JS (1999) Homoplasty increases phylogenetic structure. Cladistics 15:91–93

    Google Scholar 

  • Kardolus JP, Vaneck HJ, Vandenberg RG (1998) The potential of AFLPs in biosystematics — a first application in Solanum taxonomy (Solanaceae). Plant Syst Evol 210:87–103

    Google Scholar 

  • Karehed J, Lundberg J, Bremer B, Bremer K (1999) Evolution of the Australasian families Alseuosmiaceae, Argophyllaceae, and Phellinaceae. Syst Bot 24:660–682

    Google Scholar 

  • Karol KG, Rodman JE, Conti E, Sytsma KJ (1999) Nucleotide sequence of rbcL and phylogenetic relationships of Setchellanthus caeruleus (Setchellanthaceae). Taxon 48:303–315

    Google Scholar 

  • Katz-Downie DS, Valiejo-Roman CM, Terentieva EI, Troitsky AV, Pimenov MG, Lee B, Downie SR (1999) Towards a molecular phylogeny of Apiaceae subfamily Apioideae: additional information from nuclear ribosomal DNA ITS sequences. Plant Syst Evol 216:167–195

    CAS  Google Scholar 

  • Kelchner SA, Clark LG (1997) Molecular evolution and phylogenetic utility of the chloroplast rpl16 intron in Chusquea and the Bambusoideae (Poaceae). Mol Phylogenet Evol 8:385–397

    PubMed  CAS  Google Scholar 

  • Kellogg EA, Juliano ND (1997) The structure and function of rubisco and their implications for systematic studies. Am J Bot 84:413–428

    PubMed  CAS  Google Scholar 

  • Kim HG, Keeley SC, Vroom PS, Jansen RK (1998) Molecular evidence for an African origin of the Hawaiian endemic Hesperomannia (Asteraceae). Proc Natl Acad Sci USA 95:15440–15445

    PubMed  CAS  Google Scholar 

  • Kim SC, Crawford DJ, Francisco-Ortega J, Santos-Guerra A (1999a) Adaptive radiation and genetic differentiation in the woody Sonchus alliance (Asteraceae: Sonchinae) in the Canary Islands. Plant Syst Evol 215:101–118

    Google Scholar 

  • Kim SC, Crawford DJ, Jansen RK, Santos-Guerra A (1999b) The use of a non-coding region of chloroplast DNA in phylogenetic studies of the subtribe Sonchinae (Asteraceae: Lactuceae). Plant Syst Evol 215:85–99

    Google Scholar 

  • Kim SC, Crawford DJ, Tadesse M, Berbee M, Ganders FR, Pirseyedi M, Esselman EJ (1999c) ITS sequences and phylogenetic relationships in Bidens and Coreopsis (Asteraceae). Syst Bot 24:480–493

    Google Scholar 

  • Kim YD, Jansen RK (1998) Chloroplast DNA restriction site variation and phylogeny of the Berberidaceae. Am J Bot 85:1766–1778

    PubMed  CAS  Google Scholar 

  • Knox EB, Palmer JD (1998) Chloroplast DNA evidence on the origin and radiation of the giant lobelias in eastern Africa. Syst Bot 23:109–149

    Google Scholar 

  • Koch M, Mummenhoff K, Hurka H (1999) Molecular phylogenetics of Cochlearia (Brassicaceae) and allied genera based on nuclear ribosomal ITS DNA sequence analysis contradict traditional concepts of their evolutionary relationship. Plant Syst Evol 216:207–230

    CAS  Google Scholar 

  • Korall P, Kenrick P, Therrien JP (1999) Phylogeny of Selaginellaceae: evaluation of generic subgeneric relationships based on rbcL gene sequences. Int J Plant Sci 160:585–594

    CAS  Google Scholar 

  • Kron KA (1997) Phylogenetic relationships of Rhododendroideae (Ericaceae). Am J Bot 84:973–980

    PubMed  CAS  Google Scholar 

  • Kron KA, Fuller R, Crayn DM, Gadek PA, Quinn CJ (1999) Phylogenetic relationships of epacrids and vaccinioids (Ericaceae s.l.) based on matK sequence data. Plant Syst Evol 218:55–65

    Google Scholar 

  • Kuzoff RK, Sweere JA, Soltis DE, Soltis PS, Zimmer EA (1998) The phylogenetic potential of entire 26S rDNA sequences in plants. Mol Biol Evol 15:251–263

    PubMed  CAS  Google Scholar 

  • Laurent N, Bremer B, Bremer K (1998) Phylogeny and generic interrelationships of the Stylidiaceae (Asterales), with a possible extreme case of floral paedomorphosis. Syst Bot 23:289–304

    Google Scholar 

  • Lawton-Rauh AL, Buckler EI, Purugganan MD (1999) Patterns of molecular evolution among paralogous floral homeotic genes. Mol Biol Evol 16:1037–1045

    PubMed  CAS  Google Scholar 

  • Leitch IJ, Chase MW, Bennett MD (1998) Phylogenetic analysis of DNA C-values provides evidence for a small ancestral genome size in flowering plants. Ann Bot 82:85–94

    CAS  Google Scholar 

  • Les DH, Cleland MA, Waycott M (1997) Phylogenetic studies in Alismatidae. II. Evolution of marine angiosperms (seagrasses) and hydrophily. Syst Bot 22:443–463

    Google Scholar 

  • Les DH, Schneider EL, Padgett DJ, Soltis PS, Soltis DE, Zanis M (1999) Phylogeny, classification and floral evolution of water lilies (Nymphaeaceae; Nymphaeales): a synthesis of non-molecular, rbcL, matK, and 18S rDNA data. Syst Bot 24:28–46

    Google Scholar 

  • Lewis LA, Mishler BD, Vilgalys R (1997) Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast gene rbcL. Mol Phylogenet Evol 7:377–393

    PubMed  CAS  Google Scholar 

  • Li JH, Bogle AL, Klein AS (1997) Interspecific relationships and genetic divergence of the disjunct genus Liquidambar (Hamamelidaceae) inferred from DNA sequences of plastid gene matK. Rhodora 99:229–240

    Google Scholar 

  • Li JH, Bogle AL, Klein AS (1999) Phylogenetic relationships of the Hamamelidaceae inferred from sequences of internal transcribed spacers (ITS) of nuclear ribosomal DNA. Am J Bot 86:1027–1037

    PubMed  CAS  Google Scholar 

  • Liston A, Robinson WA, Pinero D, Alvarez-Buylla ER (1999) Phylogenetics of Pinus (Pinaceae) based on nuclear ribosomal DNA internal transcribed spacer region sequences. Mol Phylog Evol 11:95–109

    CAS  Google Scholar 

  • Liu B, Vega JM, Feldman M (1998) Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences. Genome 41:535–542

    PubMed  CAS  Google Scholar 

  • Lledo MD, Crespo MB, Cameron KM, Fay MF, Chase MW (1998) Systematics of Plumbaginaceae based upon cladistic analysis of rbcL sequence data. Syst Bot 23:21–29

    Google Scholar 

  • Lockhart PJ, Howe CJ, Barbrook AC, Larkum AWD, Penny D (1999) Spectral analysis, systematic bias, and the evolution of chloroplasts. Mol Biol Evol 16:573–576

    CAS  Google Scholar 

  • Luckow M, Bruneau A (1997) Circularity and independence in phylogenetic tests of ecological hypotheses. Cladistics 13:145–151

    Google Scholar 

  • Manos PS (1997) Systematics of Nothofagus (Nothofagaceae) based on rDNA spacer sequences (ITS). Taxonomic congruence with morphology and plastid sequences. Am J Bot 84:1137–1155

    PubMed  CAS  Google Scholar 

  • Manos PS, Doyle JJ, Nixon KC (1999) Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae). Mol Phylogenet Evol 12:333–349

    PubMed  CAS  Google Scholar 

  • Mason-Gamer RJ, Weil CF, Kellogg EA (1998) Granule-bound starch synthase: structure, function, and phylogenetic utility. Mol Biol Evol 15:1658–1673

    PubMed  CAS  Google Scholar 

  • Mast AR (1998) Molecular systematics of sub tribe Banksiinae (Banksia and Dryandra; Proteaceae) based on cpDNA and nrDNA sequence data: Implications for taxonomy and biogeography. Austr Syst Bot 11:321–342

    Google Scholar 

  • Mathews S, Donoghue MJ (1999) The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science 286:947–950

    PubMed  CAS  Google Scholar 

  • McDade LA, Moody ML (1999) Phylogenetic relationships among Acanthaceae: evidence from noncoding trnL-trnF chloroplast DNA sequences. Am J Bot 86:70–80

    PubMed  CAS  Google Scholar 

  • McKinnon GE, Steane DA, Potts BM, Vaillancourt RE (1999) Incongruence between chloroplast and species phylogenies in Eucalyptus subgenus Monocalyptus (Myrtaceae). Am J Bot 86:1038–1046

    PubMed  CAS  Google Scholar 

  • Meerow AW, Fay MF, Guy CL, Li QB, Zaman FQ, Chase MW (1999) Systematics of Amaryllidaceae based on cladistic analysis of plastid rbcL and trnL-F sequence data. Am J Bot 86:1325–1345

    PubMed  CAS  Google Scholar 

  • Miller JT, Spooner DM (1999) Collapse of species boundaries in the wild potato Solanum brevicaule complex (Solanaceae, S. sect. Petota): molecular data. Plant Syst Evol 214:103–130

    Google Scholar 

  • Moller M, Cronk QCB (1997) Origin and relationships of Saintpaulia (Gesneriaceae) based on ribosomal DNA Internal Transcribed Spacer (ITS) sequences. Am J Bot 84:956–965

    PubMed  CAS  Google Scholar 

  • Molvray M, Kores PJ, Chase MW (1999) Phylogenetic relationships within Korthalsella (Viscaceae) based on nuclear ITS and plastid trnL-F sequence data. Am J Bot 86:249–260

    PubMed  CAS  Google Scholar 

  • Mort ME, Soltis DE (1999) Phylogenetic relationships and the evolution of ovary position in Saxifraga section Micranthes. Syst Bot 24:139–147

    Google Scholar 

  • Muasya AM, Simpson DA, Chase MW, Culham A (1998) An assessment of suprageneric phylogeny in Cyperaceae using rbcL DNA sequences. Plant Syst Evol 211:257–271

    CAS  Google Scholar 

  • Mummenhoff K, Franzke A, Koch M (1997) Molecular data reveal convergence in fruit characters used in the classification of Thlaspi s.l. (Brassicaceae). Bet J Linn Soc 125:183–199

    Google Scholar 

  • Nandi OI, Chase MW, Endress PK (1998) A combined cladistic analysis of angiosperms using rbcL and non-molecular data sets. Ann Mo Bot Garden 85:137–212

    Google Scholar 

  • Nepokroeff M, Bremer B, Sytsma KJ (1999) Reorganization of the genus Psychotria and tribe Psychotrieae (Rubiaceae) inferred from ITS and rbcL sequence data. Syst Bot 24:5–27

    Google Scholar 

  • Newton AC, Allnutt TR, Gillies ACM, Lowe AJ, Ennos RA (1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends Ecol Evol 14:140–145

    PubMed  Google Scholar 

  • Nickrent DL, Duff RJ, Colwell AE, Wolfe AD, Young ND, Steiner KE, De Pamphilis CW (1998) Molecular phylogenetic and evolutionary studies of parasitic plants. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA, pp 211–241

    Google Scholar 

  • Nishiyama T, Kato M (1999) Molecular phylogenetic analysis among bryophytes and tracheophytes based on combined data of plastid coded genes and the 18S rRNA gene. Mol Biol Evol 16:1027–1036

    PubMed  CAS  Google Scholar 

  • Noyes RD, Rieseberg LH (1999) ITS sequence data support a single origin for North American Astereae (Asteraceae) and reflect deep geographic divisions in Aster s.l. Am J Bot 86:398–412

    PubMed  CAS  Google Scholar 

  • Okane SL, Schaal BA (1998) Phylogenetics of Lopezia (Onagraceae). Evidence from chloroplast DNA restriction sites. Syst Bot 23:5–20

    Google Scholar 

  • Olsen KM, Schaal BA (1999) Evidence on the origin of cassava: Phylogeography of Manihot esculenta. Proc Natl Acad Sci USA 96:5586–5591

    PubMed  CAS  Google Scholar 

  • Oxelman B, Liden M, Berglund D (1997) Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Syst Evol 206:393–410

    Google Scholar 

  • Padgett DJ, Les DH, Crow GE (1999) Phylogenetic relationships in Nuphar (Nymphaeaceae): evidence from morphology, chloroplast DNA, and nuclear ribosomal DNA. Am J Bot 86:1316–1324

    PubMed  CAS  Google Scholar 

  • Palmer JD, Delwiche CF (1998) The origin and evolution of plastids and their genomes. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA, pp 375–409

    Google Scholar 

  • Panero JL, Francisco-Ortega J, Jansen RK, Santos-Guerra A (1999) Molecular evidence for multiple origins of woodiness and a New World biogeographic connection of the Macaronesian Island endemic Pericallis (Asteraceae: Senecioneae). Proc Natl Acad Sci USA 96:13886–13891

    PubMed  CAS  Google Scholar 

  • Pellmyr O, Leebens-Mack J (1999) Forty million years of mutualism: evidence for Eocene origin of the yucca-yucca moth association. Proc Natl Acad Sci USA 96:9178–9183

    PubMed  CAS  Google Scholar 

  • Plunkett GM, Downie SR (1999) Major lineages within Apiaceae subfamily Apioideae: a comparison of chloroplast restriction site and DNA sequence data. Am J Bot 86:1014–1026

    PubMed  CAS  Google Scholar 

  • Plunkett GM, Soltis DE, Soltis PS (1997) Clarification of the relationship between Apiaceae and Araliaceae based on matK and rbcL sequence data. Am J Bot 84:565–580

    PubMed  CAS  Google Scholar 

  • Poggio L, Confalonieri V, Comas C, Gonzalez G, Naranjo CA (1999) Genomic affinities of Zea luxurians Z. diploperennis, and Z. perennis: meiotic behavior of their F-l hybrids and genomic in situ hybridization (GISH). Genome 42:993–1000

    Google Scholar 

  • Provan J, Lawrence P, Young G, Wright F, Bird R, Paglia G, Cattonaro F, Morgante M, Powell W (1999a) Analysis of the genus Zea (Poaceae) using polymorphic chloroplast simple sequence repeats. Plant Syst Evol 218:245–256

    CAS  Google Scholar 

  • Provan J, Soranzo N, Wilson NJ, McNicol JW, Morgante M, Powell W (1999b) The use of uniparentally inherited simple sequence repeat markers in plant population studies and systematics. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor and Francis, London, pp 35–50

    Google Scholar 

  • Purps DML, Kadereit JW (1998) RAPD evidence for a sister group relationship of the presumed progenitor-derivative species pair Senecio nebrodensis and 5. viscosus (Asteraceae). Plant Syst Evol 211:57–70

    Google Scholar 

  • Qiu YL, Chase MW, Hoot SB, Conti E, Crane PR, Sytsma KJ, Parks CR (1998a) Phylogenetics of the Hamamelidae and their allies: parsimony analyses of nucleotide sequences of the plastid gene rbcL. Int J Plant Sci 159:891–905

    CAS  Google Scholar 

  • Qiu YL, Cho YR, Cox JC, Palmer JD (1998b) The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature 394:671–674

    PubMed  CAS  Google Scholar 

  • Qiu YL, Lee JH, Bernasconi-Quadroni F, Soltis DE, Soltis PS, Zanis M, Zimmer EA, Chen ZD, Savolainen V, Chase MW (1999) The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes. Nature 402:404–407

    PubMed  CAS  Google Scholar 

  • Raina SN, Mukai Y (1999) Genomic in situ hybridization in Arachis (Fabaceae) identifies the diploid wild progenitors of cultivated (A. hypogaea) and related wild (A. monticola) peanut species. Plant Syst Evol 214:251–262

    Google Scholar 

  • Reeves PA, Olmstead RG (1998) Evolution of novel morphological and reproductive traits in a clade containing Antirrhinum majus (Scrophulariaceae). Am J Bot 85:1047–1056

    PubMed  CAS  Google Scholar 

  • Renner SS (1999) Circumscription and phylogeny of the Laurales: evidence from molecular and morphological data. Am J Bot 86:1301–1315

    PubMed  CAS  Google Scholar 

  • Renner SS, Schwarzbach AE, Lohmann L (1997) Phylogenetic position and floral function of Siparuna (Siparunaceae, Laurales). Int J Plant Sci 158:S89–S98

    Google Scholar 

  • Riechers DE, Timko MP (1999) Structure and expression of the gene family encoding putrescine N-methyltransferase in Nicotiana tabacum: new clues to the evolutionary origin of cultivated tobacco. Plant Mol Biol 41:387–401

    PubMed  CAS  Google Scholar 

  • Rieseberg LH (1997) Hybrid origins of plant species. Annu Rev Ecol Syst 28:359–389

    Google Scholar 

  • Rieseberg LH (1998) Genetic mapping as a tool for studying speciation. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Klu-wer Academic, Norwell, MA, pp 459–487

    Google Scholar 

  • Rieseberg LH, Kim MJ, Seiler GJ (1999) Introgression between the cultivated sunflower and a sympatric wild relative, Helianthus petiolaris (Asteraceae). Int J Plant Sci 160:102–108

    Google Scholar 

  • Rodman JE, Soltis PS, Soltis DE, Sytsma KJ, Karol KG (1998) Parallel evolution of glucosinolate biosynthesis inferred from congruent nuclear and plastid gene phylogenies. Am J Bot 85:997–1006

    PubMed  CAS  Google Scholar 

  • Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA (1998) Phylogeographic studies in plants — problems and prospects. Mol Ecol 7:465–474

    Google Scholar 

  • Schnabel A, Wendel JF (1998) Cladistic biogeography of Gleditsia (Leguminosae) based on ndhV and rpl16 chloroplast gene sequences. Am J Bot 85:1753–1765

    PubMed  CAS  Google Scholar 

  • Schwarzbach AE, Kadereit JW (1999) Phylogeny of prickly poppies, Argemone (Papaveraceae), and the evolution of morphological and alkaloid characters based on ITS nrDNA sequence variation. Plant Syst Evol 218:257–279

    CAS  Google Scholar 

  • Segraves KA, Thompson JN, Soltis PS, Soltis DE (1999) Multiple origins of polyploidy and the geographic structure of Heuchera grossulariifolia. Mol Ecol 8:253–262

    Google Scholar 

  • Setoguchi H, Ono M, Doi Y, Koyama H, Tsuda M (1997) Molecular phylogeny of Nothofagus (Nothofagaceae) based on the atpB-rbcL intergenic spacer of the chloroplast DNA. J Plant Res 110:469–484

    CAS  Google Scholar 

  • Setoguchi H, Osawa TA, Pintaud JC, Jaffre T, Veillon JM (1998) Phylogenetic relationships within Araucariaceae based on rbcL gene sequences. Am J Bot 85:1507–1516

    PubMed  CAS  Google Scholar 

  • Sinclair WT, Morman JD, Ennos RA (1999) The postglacial history of Scots pine (Pinus sylvestris L.) in western Europe: evidence from mitochondrial DNA variation. Mol Ecol 8:83–88

    Google Scholar 

  • Smith JF, Wolfram JC, Brown KD, Carroll CL, Denton DS (1997) Tribal relationships in the Gesneriaceae — evidence from DNA sequences of the chloroplast gene ndhF. Ann Mo Bot Garden 84:50–66

    Google Scholar 

  • Soltis DE, Soltis PS (1999) Polyploidy: recurrent formation and genome evolution. Trends Ecol Evol 14:348–352

    PubMed  Google Scholar 

  • Soltis DE, Hibsch-Jetter C, Soltis PS, Chase MW, Farris JS (1997) Molecular phylogenetic relationships among angiosperms: an overview based on rbcL and 18S rDNA sequences. In: Iwatsuki K, Raven PH (eds) Diversification of land plants. Springer, Berlin Heidelberg New York, pp 157–178

    Google Scholar 

  • Soltis DE, Soltis PS, Doyle JJ (1998a) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA

    Google Scholar 

  • Soltis DE, Soltis PS, Mort ME, Chase MW, Savolainen V, Hoot SB, Morton CM (1998b) Inferring complex phylogenies using parsimony — an empirical approach using three large DNA data sets for angiosperms. Syst Biol 47:32–42

    PubMed  CAS  Google Scholar 

  • Soltis DE, Mort ME, Soltis PS, Hibsch-Jetter C, Zimmer EA, Morgan D (1999a) Phyloge-netic relationships of the enigmatic angiosperm family Podostemaceae inferred from 18S rDNA and rbcL sequence data. Mol Phylogenet Evol 11:261–272

    PubMed  CAS  Google Scholar 

  • Soltis PS, Soltis DE, Chase MW (1999b) Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402:402–404

    PubMed  CAS  Google Scholar 

  • Soltis PS, Soltis DE, Wolf PG, Nickrent DL, Chaw S, Chapman RL (1999c) The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal? Mol Biol Evol 16:1774–1784

    PubMed  CAS  Google Scholar 

  • Soreng RJ, Davis JI (1998) Phylogenetics and character evolution in the grass family (Poaceae) — simultaneous analysis of morphological and chloroplast DNA restriction site character sets. Bot Rev 64:1–85

    Google Scholar 

  • Spangler RE, Olmstead RG (1999) Phylogenetic analysis of Bignoniaceae based on the cpDNA gene sequences rbcL and ndhF. Ann Mo Bot Garden 86:33–46

    Google Scholar 

  • Stace CA, Bailey JP (1999) The value of genomic in situ hybridization (GISH) in plant taxonomic and evolutionary studies. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor and Francis, London, pp 199–210

    Google Scholar 

  • Swofford DL (2000) Phylogenetic analysis using parsimony (and other methods). Sinauer Associates, Sunderland

    Google Scholar 

  • Sytsma KJ, Hahn WJ (1996) Molecular systematics: 1994–1995. Prog Bot 58:470–499

    Google Scholar 

  • Taberlet P, Fumagalli L, Wustsaucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol 7:453–464

    PubMed  CAS  Google Scholar 

  • Terry RG, Brown GK, Olmstead RG (1997) Examination of subfamilial phylogeny in Bromeliaceae using comparative sequencing of the plastid locus ndhF. Am J Bot 84:664–670

    PubMed  CAS  Google Scholar 

  • Tremblay NO, Schoen DJ (1999) Molecular phylogeography of Dryas integrifolia: glacial refugia and postglacial recolonization. Mol Ecol 8:1187–1198

    Google Scholar 

  • Vargas P, Baldwin BG, Constance L (1998) Nuclear ribosomal DNA evidence for a western North American origin of Hawaiian and South American species of Sanicula (Apiaceae). Proc Natl Acad Sci USA 95:235–240

    PubMed  CAS  Google Scholar 

  • Vijverberg K, Mes THM, Bachmann K (1999) Chloroplast DNA evidence for the evolution of Microseris (Asteraceae) in Australia and New Zealand after long-distance dispersal from western North America. Am J Bot 86:1448–1463

    PubMed  CAS  Google Scholar 

  • Wagstaff SJ, Hickerson L, Spangler R, Reeves PA, Olmstead RG (1998) Phylogeny in Labiatae s.l., inferred from cpDNA sequences. Plant Syst Evol 209:265–274

    CAS  Google Scholar 

  • Wayne RK, Leonard JA, Cooper A (1999) Full of sound and fury: the recent history of ancient DNA. Annu Rev Ecol Syst 30:457–477

    Google Scholar 

  • Weller SG, Sakai AK (1999) Using phylogenetic approaches for the analysis of plant breeding system evolution. Annu Rev Ecol Syst 30:167–199

    Google Scholar 

  • Wen J (1999) Evolution of eastern Asian and eastern North American disjunct distributions in flowering plants. Annu Rev Ecol Syst 30:421–455

    Google Scholar 

  • Wendel JF, Doyle JJ (1998) Phylogenetic incongruence: window into genome history and molecular evolution. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA, pp 265–296

    Google Scholar 

  • Whitlock BA, Baum DA (1999) Phylogenetic relationships of Theobroma and Herrania (Sterculiaceae) based on sequences of the nuclear gene Vicilin. Syst Bot 24:128–138

    Google Scholar 

  • Wiegrefe SJ, Sytsma KJ, Guries RP (1998) The Ulmaceae: one family or two? Evidence from chloroplast DNA restriction site mapping. Plant Syst Evol 210:249–270

    Google Scholar 

  • Wolf PG, Pryer KM, Smith AR, Hasebe M (1998) Phylogenetic studies of extant pteridophytes. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA, pp 541–556

    Google Scholar 

  • Wolf PG, Sipes SD, White MR, Martines ML, Pryer KM, Smith AR, Ueda K (1999) Phylogenetic relationships of the enigmatic fern families Hymenophyllopsidaceae and Lophosoriaceae: evidence from rbcL nucleotide sequences. Plant Syst Evol 219:263–270

    CAS  Google Scholar 

  • Wolfe A, Liston A (1998) Contributions of PCR-based methods to plant systematics and evolutionary biology. In: Soltis DE, Soltis PS, Doyle JJ (eds) DNA sequencing. Molecular systematics of plants, vol 2. Kluwer Academic, Norwell, MA, pp 43–86

    Google Scholar 

  • Wolfe AD, Xiang QY, Kephart SR (1998) Assessing hybridization in natural populations of Penstemon (Scrophulariaceae) using hypervariable intersimple sequence repeat (ISSR) bands. Mol Ecol 7:1107–1125

    PubMed  CAS  Google Scholar 

  • Xiang QY, Crawford DJ, Wolfe AD, Tang YC, Depamphilis CW (1998a) Origin and bio­geography of Aesculus L. (Hippocastanaceae) - a molecular phylogenetic perspective. Evolution 52:988–997

    Google Scholar 

  • Xiang QY, Soltis DE, Soltis PS (1998b) The eastern Asian and eastern and western North American floristic disjunction: congruent phylogenetic patterns in seven diverse genera. Mol Phylogenet Evol 10:178–190

    PubMed  CAS  Google Scholar 

  • Young ND, Steiner KE, De Pamphilis CW (1999) The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequences refute an evolutionary transition series. Ann Mo Bot Garden 86:876–893

    Google Scholar 

  • Zhang WP, Wendel JF, Clark LG (1997) Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae). Mol Phylogenet Evol 8:205–217

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2001 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Sytsma, K.J., Hahn, W.J. (2001). Molecular Systematics: 1997–1999. In: Esser, K., Lüttge, U., Kadereit, J.W., Beyschlag, W. (eds) Progress in Botany. Progress in Botany, vol 62. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-56849-7_14

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-56849-7_14

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-52378-6

  • Online ISBN: 978-3-642-56849-7

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics