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Mitochondrial Targeting of RNA and Mitochondrial Translation

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Abstract

Mitochondrial translation depends on the macromolecular components imported from the cytosol, which include translation factors, ribosomal proteins, aminoacyl-tRNA synthetases, and a variable number of small noncoding RNAs. The lasts are essentially tRNAs, but other small RNAs, like mammalian 5S rRNA, are also concerned by the RNA mitochondrial targeting pathway. If their importance in mitochondrial translation was demonstrated in each case where it was addressed, the precise function of these molecules differs from one system to another: in many cases they complement lacking mtDNA encoded counterparts, in others can fulfill conditional functions, finally they can complement the lack of needed mitochondrial enzymatic activities. In any case, it appears that the innated capacity of mitochondria to import small RNA molecules is supplied by specific additional protein, often performing their “second job” to deliver the needed RNA in the organelle. This mechanism, still not understood in details, remains the unique natural pathway of nucleic acids delivery in mitochondria, and is therefore of a significant interest as a tool permitting to target this organelle with potentially therapeutic molecules and thus addressing a very important bulk of human pathologies linked with dysfunctions of mitochondrial translation machinery.

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References

  • Adhya S (2008) Leishmania mitochondrial tRNA importers. Int J Biochem Cell Biol 40(12):2681–2685

    PubMed  CAS  Google Scholar 

  • Agris PF, Vendeix FA, Graham WD (2007) tRNA’s wobble decoding of the genome: 40 years of modification. J Mol Biol 366(1):1–13

    PubMed  CAS  Google Scholar 

  • Bandiera S, Ruberg S, Girard M, Cagnard N, Hanein S, Chretien D, Munnich A, Lyonnet S, Henrion-Caude A (2011) Nuclear outsourcing of RNA interference components to human mitochondria. PLoS ONE 6(6):e20746

    PubMed  CAS  Google Scholar 

  • Barrey E, Saint-Auret G, Bonnamy B, Damas D, Boyer O, Gidrol X (2011) Pre-microRNA and mature microRNA in human mitochondria. PLoS ONE 6(5):e20220

    PubMed  CAS  Google Scholar 

  • Bian Z, Li LM, Tang R, Hou DX, Chen X, Zhang CY, Zen K (2010) Identification of mouse liver mitochondria-associated miRNAs and their potential biological functions. Cell Res 20(9):1076–1078

    PubMed  Google Scholar 

  • Brandina I, Smirnov A, Kolesnikova O, Entelis N, Krasheninnikov IA, Martin RP, Tarassov I (2007) tRNA import into yeast mitochondria is regulated by the ubiquitin-proteasome system. FEBS Lett 581(22):4248–4254

    PubMed  CAS  Google Scholar 

  • Chang DD, Clayton DA (1989) Mouse RNAase MRP RNA is encoded by a nuclear gene and contains a decamer sequence complementary to a conserved region of mitochondrial RNA substrate. Cell 56(1):131–139

    PubMed  CAS  Google Scholar 

  • Charriere F, Tan TH, Schneider A (2005) Mitochondrial initiation factor 2 of Trypanosoma brucei binds imported formylated elongator-type tRNA(Met). J Biol Chem 280(16):15659–15665

    PubMed  CAS  Google Scholar 

  • Comte C, Tonin Y, Heckel-Mager AM, Boucheham A, Smirnov A, Aure K, Lombes A, Martin RP, Entelis N, Tarassov I (2013) Mitochondrial targeting of recombinant RNAs modulates the level of a heteroplasmic mutation in human mitochondrial DNA associated with Kearns Sayre Syndrome. Nucleic Acids Res 41(1):418–433

    PubMed  CAS  Google Scholar 

  • Das S, Ferlito M, Kent OA, Fox-Talbot K, Wang R, Liu D, Raghavachari N, Yang Y, Wheelan SJ, Murphy E, Steenbergen C (2012) Nuclear miRNA regulates the mitochondrial genome in the heart. Circ Res 110(12):1596–1603

    PubMed  CAS  Google Scholar 

  • Dennerlein S, Rozanska A, Wydro M, Chrzanowska-Lightowlers ZM, Lightowlers RN (2010) Human ERAL1 is a mitochondrial RNA chaperone involved in the assembly of the 28S small mitochondrial ribosomal subunit. Biochem J 430(3):551–558

    PubMed  CAS  Google Scholar 

  • Dietrich A, Weil JH, Marechal-Drouard L (1992) Nuclear-encoded transfer RNAs in plant mitochondria. Annu Rev Cell Biol 8:115–131

    PubMed  CAS  Google Scholar 

  • Dietrich A, Marechal-Drouard L, Carneiro V, Cosset A, Small I (1996) A single base change prevents import of cytosolic tRNA(Ala) into mitochondria in transgenic plants. Plant J 10(5):913–918

    PubMed  CAS  Google Scholar 

  • Doersen CJ, Guerrier-Takada C, Altman S, Attardi G (1985) Characterization of an RNase P activity from HeLa cell mitochondria. Comparison with the cytosol RNase P activity. J Biol Chem 260(10):5942–5949

    PubMed  CAS  Google Scholar 

  • Enriquez JA, Attardi G (1996a) Analysis of aminoacylation of human mitochondrial tRNAs. Methods Enzymol 264:183–196

    PubMed  CAS  Google Scholar 

  • Enriquez JA, Attardi G (1996b) Evidence for aminoacylation-induced conformational changes in human mitochondrial tRNAs. Proc Natl Acad Sci U S A 93(16):8300–8305

    PubMed  CAS  Google Scholar 

  • Enriquez JA, Perez-Martos A, Lopez-Perez MJ, Montoya J (1996) In organello RNA synthesis system from mammalian liver and brain. Methods Enzymol 264:50–57

    PubMed  CAS  Google Scholar 

  • Entelis NS, Kolesnikova OA, Dogan S, Martin RP, Tarassov IA (2001a) 5 S rRNA and tRNA import into human mitochondria. Comparison of in vitro requirements. J Biol Chem 276(49):45642–45653

    PubMed  CAS  Google Scholar 

  • Entelis NS, Kolesnikova OA, Dogan S, Martin RP, Tarassov IA (2001b) 5 S rRNA and tRNA import into human mitochondria. Comparison of in vitro requirements. J Biol Chem 276(49):45642–45653

    PubMed  CAS  Google Scholar 

  • Entelis NS, Kolesnikova OA, Martin RP, Tarassov IA (2001c) RNA delivery into mitochondria. Adv Drug Deliv Rev 49(1–2):199–215

    PubMed  CAS  Google Scholar 

  • Entelis N, Kolesnikova O, Kazakova H, Brandina I, Kamenski P, Martin RP, Tarassov I (2002) Import of nuclear encoded RNAs into yeast and human mitochondria: experimental approaches and possible biomedical applications. Genet Eng (N Y) 24:191–213

    CAS  Google Scholar 

  • Entelis N, Brandina I, Kamenski P, Krasheninnikov IA, Martin RP, Tarassov I (2006) A glycolytic enzyme, enolase, is recruited as a cofactor of tRNA targeting toward mitochondria in Saccharomyces cerevisiae. Genes Dev 20:1609–1620

    PubMed  CAS  Google Scholar 

  • Fabian MR, Sonenberg N, Filipowicz W (2010) Regulation of mRNA translation and stability by microRNAs. Annu Rev Biochem 79:351–379

    PubMed  CAS  Google Scholar 

  • Feng L, Sheppard K, Tumbula-Hansen D, Soll D (2005) Gln-tRNAGln formation from Glu-tRNAGln requires cooperation of an asparaginase and a Glu-tRNAGln kinase. J Biol Chem 280(9):8150–8155

    PubMed  CAS  Google Scholar 

  • Foury F, Roganti T, Lecrenier N, Purnelle B (1998) The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325–331

    PubMed  CAS  Google Scholar 

  • Frechin M, Senger B, Braye M, Kern D, Martin RP, Becker HD (2009) Yeast mitochondrial Gln-tRNA(Gln) is generated by a GatFAB-mediated transamidation pathway involving Arc1p-controlled subcellular sorting of cytosolic GluRS. Genes Dev 23(9):1119–1130

    PubMed  CAS  Google Scholar 

  • Geslain R, Aeby E, Guitart T, Jones TE, Castro de Moura M, Charriere F, Schneider A, Ribas de Pouplana L (2006) Trypanosoma seryl-tRNA synthetase is a metazoan-like enzyme with high affinity for tRNASec. J Biol Chem 281(50):38217–38225

    PubMed  CAS  Google Scholar 

  • Giegé R, Sissler M, Florentz C (1998) Universal rules and idiosyncratic features in tRNA identity. Nucleic Acids Res 26:5017–5035

    PubMed  Google Scholar 

  • Gobert A, Gutmann B, Taschner A, Gossringer M, Holzmann J, Hartmann RK, Rossmanith W, Giege P (2010) A single Arabidopsis organellar protein has RNase P activity. Nat Struct Mol Biol 17(6):740–744

    PubMed  CAS  Google Scholar 

  • Goswami S, Dhar G, Mukherjee S, Mahata B, Chatterjee S, Home P, Adhya S (2006) A bifunctional tRNA import receptor from Leishmania mitochondria. Proc Natl Acad Sci U S A 103(22):8354–8359

    PubMed  CAS  Google Scholar 

  • Gutmann B, Gobert A, Giege P (2012) PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. Genes Dev 26(10):1022–1027

    PubMed  CAS  Google Scholar 

  • Hauser R, Schneider A (1995) tRNAs are imported into mitochondria of Trypanosoma brucei independently of their genomic context and genetic origin. EMBO J 14(17):4212–4220

    PubMed  CAS  Google Scholar 

  • Holzmann J, Frank P, Loffler E, Bennett KL, Gerner C, Rossmanith W (2008) RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme. Cell 135(3):462–474

    PubMed  CAS  Google Scholar 

  • Ibba M, Soll D (2004) Aminoacyl-tRNAs: setting the limits of the genetic code. Genes Dev 18(7):731–738

    PubMed  CAS  Google Scholar 

  • Jash S, Adhya S (2011) Suppression of reactive oxygen species in cells with multiple mitochondrial DNA deletions by exogenous protein-coding RNAs. Mitochondrion 11(4):607–614

    PubMed  CAS  Google Scholar 

  • Jash S, Adhya S (2012) Induction of muscle regeneration by RNA-mediated mitochondrial restoration. FASEB J 26(10):4187–4197

    PubMed  CAS  Google Scholar 

  • Jash S, Chowdhury T, Adhya S (2011) Modulation of mitochondrial respiratory capacity by carrier-mediated transfer of RNA in vivo. Mitochondrion 12(2):262–270

    PubMed  Google Scholar 

  • Joyce GF (1989) RNA evolution and the origins of life. Nature 338(6212):217–224

    PubMed  CAS  Google Scholar 

  • Kamenski P, Kolesnikova O, Jubenot V, Entelis N, Krasheninnikov IA, Martin RP, Tarassov I (2007a) Evidence for an adaptation mechanism of mitochondrial translation via tRNA import from the cytosol. Mol Cell 26(5):625–637

    PubMed  CAS  Google Scholar 

  • Kamenski P, Vinogradova E, Krasheninnikov I, Tarassov I (2007b) Directed import of macromolecules into mitochondria. Mol Biol 41:187–202

    CAS  Google Scholar 

  • Karicheva OZ, Kolesnikova OA, Schirtz T, Vysokikh MY, Mager-Heckel AM, Lombes A, Boucheham A, Krasheninnikov IA, Martin RP, Entelis N, Tarassov I (2011) Correction of the consequences of mitochondrial 3243A > G mutation in the MT-TL1 gene causing the MELAS syndrome by tRNA import into mitochondria. Nucleic Acids Res 39(18):8173–8186

    PubMed  CAS  Google Scholar 

  • Kiparisov S, Petrov A, Meskauskas A, Sergiev PV, Dontsova OA, Dinman JD (2005) Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Mol Genet Genomics 274(3):235–247

    PubMed  CAS  Google Scholar 

  • Kirino Y, Yasukawa T, Ohta S, Akira S, Ishihara K, Watanabe K, Suzuki T (2004) Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease. Proc Natl Acad Sci U S A 101(42):15070–15075

    PubMed  CAS  Google Scholar 

  • Kolanczyk M, Pech M, Zemojtel T, Yamamoto H, Mikula I, Calvaruso MA, van den Brand M, Richter R, Fischer B, Ritz A, Kossler N, Thurisch B, Spoerle R, Smeitink J, Kornak U, Chan D, Vingron M, Martasek P, Lightowlers RN, Nijtmans L, Schuelke M, Nierhaus KH, Mundlos S (2010) NOA1 is an essential GTPase required for mitochondrial protein synthesis. Mol Biol Cell 22(1):1–11

    PubMed  Google Scholar 

  • Kolesnikova OA, Entelis NS, Mireau H, Fox TD, Martin RP, Tarassov IA (2000) Suppression of mutations in mitochondrial DNA by tRNAs imported from the cytoplasm. Science 289(5486):1931–1933

    PubMed  CAS  Google Scholar 

  • Kolesnikova O, Entelis N, Kazakova H, Brandina I, Martin RP, Tarassov I (2002) Targeting of tRNA into yeast and human mitochondria: the role of anticodon nucleotides. Mitochondrion 2(1–2):95–107

    PubMed  CAS  Google Scholar 

  • Kolesnikova OA, Entelis NS, Jacquin-Becker C, Goltzene F, Chrzanowska-Lightowlers ZM, Lightowlers RN, Martin RP, Tarassov I (2004) Nuclear DNA-encoded tRNAs targeted into mitochondria can rescue a mitochondrial DNA mutation associated with the MERRF syndrome in cultured human cells. Hum Mol Genet 13(20):2519–2534

    PubMed  CAS  Google Scholar 

  • Kolesnikova O, Kazakova H, Comte C, Steinberg S, Kamenski P, Martin RP, Tarassov I, Entelis N (2010) Selection of RNA aptamers imported into yeast and human mitochondria. RNA 16(5):926–941

    PubMed  CAS  Google Scholar 

  • Kouvela EC, Gerbanas GV, Xaplanteri MA, Petropoulos AD, Dinos GP, Kalpaxis DL (2007) Changes in the conformation of 5S rRNA cause alterations in principal functions of the ribosomal nanomachine. Nucleic Acids Res 35(15):5108–5119

    PubMed  CAS  Google Scholar 

  • Kren BT, Wong PY, Sarver A, Zhang X, Zeng Y, Steer CJ (2009) MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis. RNA Biol 6(1):65–72

    PubMed  CAS  Google Scholar 

  • Kumar R, Marechal-Drouard L, Akama K, Small I (1996) Striking differences in mitochondrial tRNA import between different plant species. Mol Gen Genet 252(4):404–411

    PubMed  CAS  Google Scholar 

  • Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T (2008) Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding. J Biol Chem 283(27):18801–18811

    PubMed  CAS  Google Scholar 

  • Magalhaes PJ, Andreu AL, Schon EA (1998) Evidence for the presence of 5S rRNA in mammalian mitochondria. Mol Biol Cell 9(9):2375–2382

    PubMed  CAS  Google Scholar 

  • Mahata B, Mukherjee S, Mishra S, Bandyopadhyay A, Adhya S (2006) Functional delivery of a cytosolic tRNA into mutant mitochondria of human cells. Science 314(5798):471–474

    PubMed  CAS  Google Scholar 

  • Mahato B, Jash S, Adhya S (2011) RNA-mediated restoration of mitochondrial function in cells harboring a Kearns Sayre Syndrome mutation. Mitochondrion 11(4):564–574

    PubMed  CAS  Google Scholar 

  • Martin R, Schneller JM, Stahl A, Dirheimer G (1979) Import of nuclear deoxyribonucleic acid coded lysine-accepting transfer ribonucleic acid (anticodon C-U-U) into yeast mitochondria. Biochemistry 18:4600–4605

    PubMed  CAS  Google Scholar 

  • Mercer TR, Neph S, Dinger ME, Crawford J, Smith MA, Shearwood AM, Haugen E, Bracken CP, Rackham O, Stamatoyannopoulos JA, Filipovska A, Mattick JS (2011) The human mitochondrial transcriptome. Cell 146(4):645–658

    PubMed  CAS  Google Scholar 

  • Nagao A, Suzuki T, Katoh T, Sakaguchi Y (2009) Biogenesis of glutaminyl-mt tRNAGln in human mitochondria. Proc Natl Acad Sci U S A 106(38):16209–16214

    Google Scholar 

  • Ojala D, Montoya J, Attardi G (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature 290(5806):470–474

    PubMed  CAS  Google Scholar 

  • Pavlova LV, Gossringer M, Weber C, Buzet A, Rossmanith W, Hartmann RK (2012) tRNA processing by protein-only versus RNA-based RNase P: kinetic analysis reveals mechanistic differences. ChemBioChem 13(15):2270–2276

    PubMed  CAS  Google Scholar 

  • Puranam RS, Attardi G (2001) The RNase P associated with HeLa cell mitochondria contains an essential RNA component identical in sequence to that of the nuclear RNase P. Mol Cell Biol 21(2):548–561

    PubMed  CAS  Google Scholar 

  • Richter R, Rorbach J, Pajak A, Smith PM, Wessels HJ, Huynen MA, Smeitink JA, Lightowlers RN, Chrzanowska-Lightowlers ZM (2010) A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome. EMBO J 29(6):1116–1125

    PubMed  CAS  Google Scholar 

  • Rinehart J, Krett B, Rubio MA, Alfonzo JD, Soll D (2005) Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion. Genes Dev 19(5):583–592

    PubMed  CAS  Google Scholar 

  • Rorbach J, Richter R, Wessels HJ, Wydro M, Pekalski M, Farhoud M, Kuhl I, Gaisne M, Bonnefoy N, Smeitink JA, Lightowlers RN, Chrzanowska-Lightowlers ZM (2008) The human mitochondrial ribosome recycling factor is essential for cell viability. Nucleic Acids Res 36(18):5787–5799

    PubMed  CAS  Google Scholar 

  • Rossmanith W, Potuschak T (2001) Difference between mitochondrial RNase P and nuclear RNase P. Mol Cell Biol 21(23):8236–8237

    PubMed  CAS  Google Scholar 

  • Rubio MA, Hopper AK (2011) Transfer RNA travels from the cytoplasm to organelles. Wiley Interdiscip Rev RNA 2(6):802–817

    PubMed  CAS  Google Scholar 

  • Rubio MA, Liu X, Yuzawa H, Alfonzo JD, Simpson L (2000) Selective importation of RNA into isolated mitochondria from Leishmania tarentolae. RNA 6(7):988–1003

    PubMed  CAS  Google Scholar 

  • Rubio MA, Rinehart JJ, Krett B, Duvezin-Caubet S, Reichert AS, Soll D, Alfonzo JD (2008) Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import. Proc Natl Acad Sci U S A 105(27):9186–9191

    PubMed  CAS  Google Scholar 

  • Ruiz-Pesini E, Lott MT, Procaccio V, Poole JC, Brandon MC, Mishmar D, Yi C, Kreuziger J, Baldi P, Wallace DC (2007) An enhanced MITOMAP with a global mtDNA mutational phylogeny. Nucleic Acids Res 35(Database issue):D823–D828

    Google Scholar 

  • Salinas T, Duchene AM, Delage L, Nilsson S, Glaser E, Zaepfel M, Marechal-Drouard L (2006) The voltage-dependent anion channel, a major component of the tRNA import machinery in plant mitochondria. Proc Natl Acad Sci U S A 103(48):18362–18367

    PubMed  CAS  Google Scholar 

  • Salinas T, Duchene AM, Marechal-Drouard L (2008) Recent advances in tRNA mitochondrial import. Trends Biochem Sci 33(7):320–329

    PubMed  CAS  Google Scholar 

  • Schekman R (2010) Editorial expression of concern: a bifunctional tRNA import receptor from Leishmania mitochondria. Proc Natl Acad Sci U S A 107:9476

    Google Scholar 

  • Schneider A (1994) Import of RNA into mitochondria. Trends Cell Biol 4:282–286

    PubMed  CAS  Google Scholar 

  • Schneider A (2011) Mitochondrial tRNA import and its consequences for mitochondrial translation. Annu Rev Biochem 80:1033–1053

    PubMed  CAS  Google Scholar 

  • Schneider A, Marechal-Drouard L (2000) Mitochondrial tRNA import: are there distinct mechanisms? Trends Cell Biol 10(12):509–513

    PubMed  CAS  Google Scholar 

  • Seibel P, Trappe J, Villani G, Klopstock T, Papa S, Reichmann H (1995) Transfection of mitochondria: strategy towards a gene therapy of mitochondrial DNA diseases. Nucleic Acids Res 23(1):10–17

    PubMed  CAS  Google Scholar 

  • Sharma MR, Koc EC, Datta PP, Booth TM, Spremulli LL, Agrawal RK (2003) Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins. Cell 115(1):97–108

    PubMed  CAS  Google Scholar 

  • Sharma MR, Booth TM, Simpson L, Maslov DA, Agrawal RK (2009) Structure of a mitochondrial ribosome with minimal RNA. Proc Natl Acad Sci U S A 106(24):9637–9642

    PubMed  CAS  Google Scholar 

  • Sieber F, Duchene AM, Marechal-Drouard L (2011a) Mitochondrial RNA import: from diversity of natural mechanisms to potential applications. Int Rev Cell Mol Biol 287:145–190

    PubMed  CAS  Google Scholar 

  • Sieber F, Placido A, El Farouk-Ameqrane S, Duchene AM, Marechal-Drouard L (2011b) A protein shuttle system to target RNA into mitochondria. Nucleic Acids Res 39(14):e96

    PubMed  CAS  Google Scholar 

  • Simpson AM, Suyama Y, Dewes H, Campbell DA, Simpson L (1989) Kinetoplastid mitochondria contain functional tRNAs which are encoded in nuclear DNA and also contain small minicircle and maxicircle transcripts of unknown function. Nucleic Acids Res 17(14):5427–5445

    PubMed  CAS  Google Scholar 

  • Small I, Marechal-Drouard L, Masson J, Pelletier G, Cosset A, Weil JH, Dietrich A (1992) In vivo import of a normal or mutagenized heterologous transfer RNA into the mitochondria of transgenic plants: towards novel ways of influencing mitochondrial gene expression? EMBO J 11(4):1291–1296

    PubMed  CAS  Google Scholar 

  • Smirnov A, Entelis N, Krasheninnikov I, P. MR, Tarassov I (2008a) 5S rRNA: peculiarities of structure, interactions with macromolecules and possible functions. Progress in Biological Chemistry (Russian, translated in English)

    Google Scholar 

  • Smirnov A, Tarassov I, Mager-Heckel AM, Letzelter M, Martin RP, Krasheninnikov IA, Entelis N (2008) Two distinct structural elements of 5S rRNA are needed for its import into human mitochondria. RNA 14(4):749–759

    PubMed  CAS  Google Scholar 

  • Smirnov A, Comte C, Mager-Heckel AM, Addis V, Krasheninnikov IA, Martin RP, Entelis N, Tarassov I (2010) Mitochondrial enzyme rhodanese is essential for 5 S ribosomal RNA import into human mitochondria. J Biol Chem 285(40):30792–30803

    PubMed  CAS  Google Scholar 

  • Smirnov A, Entelis N, Martin RP, Tarassov I (2011) Biological significance of 5S rRNA import into human mitochondria: role of ribosomal protein MRP-L18. Genes Dev 25(12):1289–1305

    PubMed  CAS  Google Scholar 

  • Smith PM, Lightowlers RN (2010) Altering the balance between healthy and mutated mitochondrial DNA. J Inherit Metab Dis 34(2):309–313

    PubMed  Google Scholar 

  • Smith MW, Meskauskas A, Wang P, Sergiev PV, Dinman JD (2001) Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 21(24):8264–8275

    PubMed  CAS  Google Scholar 

  • Smith PM, Ross GF, Taylor RW, Turnbull DM, Lightowlers RN (2004) Strategies for treating disorders of the mitochondrial genome. Biochim Biophys Acta 1659(2–3):232–239

    PubMed  CAS  Google Scholar 

  • Smits P, Smeitink JA, van den Heuvel LP, Huynen MA, Ettema TJ (2007) Reconstructing the evolution of the mitochondrial ribosomal proteome. Nucleic Acids Res 35(14):4686–4703

    PubMed  CAS  Google Scholar 

  • Smits P, Smeitink J, van den Heuvel L (2010) Mitochondrial translation and beyond: processes implicated in combined oxidative phosphorylation deficiencies. J Biomed Biotechnol 2010:737385

    PubMed  Google Scholar 

  • Soleimanpour-Lichaei HR, Kuhl I, Gaisne M, Passos JF, Wydro M, Rorbach J, Temperley R, Bonnefoy N, Tate W, Lightowlers R, Chrzanowska-Lightowlers Z (2007) mtRF1a is a human mitochondrial translation release factor decoding the major termination codons UAA and UAG. Mol Cell 27(5):745–757

    PubMed  CAS  Google Scholar 

  • Sprinzl M, Vassilenko KS (2005) Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 33(Database issue):D139–D140

    Google Scholar 

  • Tan TH, Bochud-Allemann N, Horn EK, Schneider A (2002a) Eukaryotic-type elongator tRNAMet of Trypanosoma brucei becomes formylated after import into mitochondria. Proc Natl Acad Sci U S A 99(3):1152–1157

    PubMed  CAS  Google Scholar 

  • Tan TH, Pach R, Crausaz A, Ivens A, Schneider A (2002b) tRNAs in Trypanosoma brucei: genomic organization, expression, and mitochondrial import. Mol Cell Biol 22(11):3707–3717

    PubMed  CAS  Google Scholar 

  • Tarassov I, Entelis N, Martin R (1995) Mitochondrial import of a cytoplasmic lysine-tRNA in yeast is mediated by cooperation of cytoplasmic and mitochondrial lysyl-tRNA synthetases. EMBO J 14:3461–3471

    PubMed  CAS  Google Scholar 

  • Tarassov I, Kamenski P, Kolesnikova O, Karicheva O, Martin RP, Krasheninnikov IA, Entelis N (2007) Import of nuclear DNA-encoded RNAs into mitochondria and mitochondrial translation. Cell Cycle 6(20):2473–2477

    PubMed  CAS  Google Scholar 

  • Taylor RW, Wardell TM, Smith PM, Muratovska A, Murphy MP, Turnbull DM, Lightowlers RN (2001) An antigenomic strategy for treating heteroplasmic mtDNA disorders. Adv Drug Deliv Rev 49(1–2):121–125

    PubMed  CAS  Google Scholar 

  • Topper JN, Bennett JL, Clayton DA (1992) A role for RNAase MRP in mitochondrial RNA processing. Cell 70(1):16–20

    PubMed  CAS  Google Scholar 

  • Umeda N, Suzuki T, Yukawa M, Ohya Y, Shindo H, Watanabe K (2005) Mitochondria-specific RNA-modifying Enzymes responsible for the biosynthesis of the wobble base in mitochondrial tRNAs. Implications for the molecular pathogenesis of human mitochondrial diseases. J Biol Chem 280(2):1613–1624

    PubMed  CAS  Google Scholar 

  • Vedrenne V, Gowher A, De Lonlay P, Nitschke P, Serre V, Boddaert N, Altuzarra C, Mager-Heckel AM, Chretien F, Entelis N, Munnich A, Tarassov I, Rotig A (2012) Mutation in PNPT1, which encodes a polyribonucleotide nucleotidyltransferase, impairs RNA import into mitochondria and causes respiratory-chain deficiency. Am J Hum Genet 91(5):912–918

    PubMed  CAS  Google Scholar 

  • Vestweber D, Schatz G (1989) DNA-protein conjugates can enter mitochondria via the protein import pathway. Nature 338(6211):170–172

    PubMed  CAS  Google Scholar 

  • Vinogradova E, Salinas T, Cognat V, Remacle C, Marechal-Drouard L (2009) Steady-state levels of imported tRNAs in Chlamydomonas mitochondria are correlated with both cytosolic and mitochondrial codon usages. Nucleic Acids Res 37(5):1521–1528

    PubMed  CAS  Google Scholar 

  • von Ameln S, Wang G, Boulouiz R, Rutherford MA, Smith GM, Li Y, Pogoda HM, Nurnberg G, Stiller B, Volk AE, Borck G, Hong JS, Goodyear RJ, Abidi O, Nurnberg P, Hofmann K, Richardson GP, Hammerschmidt M, Moser T, Wollnik B, Koehler CM, Teitell MA, Barakat A, Kubisch C (2012) A mutation in PNPT1, encoding mitochondrial-RNA-import protein PNPase, causes hereditary hearing loss. Am J Hum Genet 91(5):919–927

    Google Scholar 

  • Wang G, Chen HW, Oktay Y, Zhang J, Allen EL, Smith GM, Fan KC, Hong JS, French SW, McCaffery JM, Lightowlers RN, Morse HC 3rd, Koehler CM, Teitell MA (2010) PNPASE regulates RNA import into mitochondria. Cell 142(3):456–467

    PubMed  CAS  Google Scholar 

  • Wang G, Shimada E, Zhang J, Hong JS, Smith GM, Teitell MA, Koehler CM (2012) Correcting human mitochondrial mutations with targeted RNA import. Proc Natl Acad Sci U S A 109(13):4840–4845

    PubMed  CAS  Google Scholar 

  • Wanschers BF, Szklarczyk R, Pajak A, van den Brand MA, Gloerich J, Rodenburg RJ, Lightowlers RN, Nijtmans LG, Huynen MA (2012) C7orf30 specifically associates with the large subunit of the mitochondrial ribosome and is involved in translation. Nucleic Acids Res 40(9):4040–4051

    PubMed  CAS  Google Scholar 

  • Yasukawa T, Suzuki T, Ishii N, Ohta S, Watanabe K (2001) Wobble modification defect in tRNA disturbs codon-anticodon interaction in a mitochondrial disease. EMBO J 20(17):4794–4802

    PubMed  CAS  Google Scholar 

  • Yokoyama S, Nishimura S (1995) Modified nucleosides and codon recognition. In: RajBhandary U, Söll D (eds) tRNA: structure, biosynthesis and function. American Society for Microbiology Press, Washington, DC, pp 207–233

    Google Scholar 

  • Yoshionari S, Koike T, Yokogawa T, Nishikawa K, Ueda T, Miura K, Watanabe K (1994) Existence of nuclear-encoded 5S-rRNA in bovine mitochondria. FEBS Lett 338(2):137–142

    PubMed  CAS  Google Scholar 

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Acknowledgments

The authors thank all the members of the UMR 7156 GMGM mitochondrial team (Strasbourg, France), H. Becker (Strasbourg, France), R. N. Lightowlers (Newcastle, U.K.), and J. Herrmann (Kaiserslautern, Germany) for helpful discussions. The studies of our team cited in the chapter were supported by the CNRS, University of Strasbourg, ANR (Agence Nationale de Recherche), AFM (Association Française cotre les Myopathies), FRM (Fondation de Recherche Médicale), and the National Program Investissement d’Avenir (LabEx MitoCross).

IC and PK are supported by Russian Foundation for Basic Research and Russian Ministry of Education and Science (Federal programme "Scientific stuff of innovative Russia").

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Correspondence to Ivan Tarassov .

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Tarassov, I., Chicherin, I., Tonin, Y., Smirnov, A., Kamenski, P., Entelis, N. (2013). Mitochondrial Targeting of RNA and Mitochondrial Translation. In: Duchêne, AM. (eds) Translation in Mitochondria and Other Organelles. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-39426-3_4

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