An Artificial Chemistry System for Simulating Cell Chemistry: The First Step

  • Chien-Le Goh
  • Hong Tat Ewe
  • Yong Kheng Goh
Part of the Lecture Notes in Computer Science book series (LNCS, volume 7928)


Artificial chemistry is a man-made system that is similar to a real chemical system. It represents a good starting point to simulate cell processes from the bio-chemistry level. In this article, an artificial chemistry system which strikes a balance among closeness to reality, fast simulation speed and high flexibility is proposed. Preliminary results have shown that the model can simulate a general reversible reaction well.


artificial chemistry cell simulation 


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  1. 1.
    Castro, L.: Fundamentals of natural computing: an overview. Physics of Life Reviews 4, 1–36 (2007)CrossRefGoogle Scholar
  2. 2.
    Dittrich, P., Ziegler, J., Banzhaf, W.: Artificial Chemistries - A Review. Artificial Life 7(3), 225–275 (2001)CrossRefGoogle Scholar
  3. 3.
    Hutton, T.J.: Evolvable Self-replicating Molecules in an Artificial Chemistry. Artificial Life 8(4), 341–356 (2002)MathSciNetCrossRefGoogle Scholar
  4. 4.
    Hutton, T.J.: Evolvable Self-reproducing Cells in a Two-dimensional Artificial Chemistry. Artificial Life 13(1), 11–30 (2007)MathSciNetCrossRefGoogle Scholar
  5. 5.
    Lenaerts, T., Bersini, H.: A Synthon Approach to Artificial Chemistry. Artificial Life 15(1), 90–103 (2009)CrossRefGoogle Scholar
  6. 6.
    Kyoda, K., Muraki, M., Kitano, H.: Construction of a Generalized Simulator for Multe-cellular Organisms and its Application to SMAD Signal Transduction. In: Pacific Symposium on Biocomputing, pp. 314–325 (2000)Google Scholar
  7. 7.
    Watanabe, T., et al.: A Uniform Framework of Molecular Interaction for an Artificial Chemistry with Compartments. In: IEEE Symposium Artificial Life, pp. 54–60 (2007)Google Scholar
  8. 8.
    Yamamoto, T., Kaneko, K.: Tile Automaton in the Well-mixed Medium. Physica D (181), 252–273 (2003)Google Scholar

Copyright information

© Springer-Verlag Berlin Heidelberg 2013

Authors and Affiliations

  • Chien-Le Goh
    • 1
  • Hong Tat Ewe
    • 2
  • Yong Kheng Goh
    • 2
  1. 1.Faculty of Computing and InformaticsMultimedia UniversityCyberjayaMalaysia
  2. 2.Faculty of Engineering and ScienceUniversiti Tunku Abdul RahmanMalaysia

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