Skip to main content

Flexible and Efficient Retrieval of Haemodialysis Time Series

  • Conference paper

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 7738))

Abstract

The problem of retrieving time series similar to a specified query pattern has been recently addressed within the Case Based Reasoning (CBR) literature. Providing a flexible and efficient way of dealing with such an issue would be of paramount importance in medical domains, where many patient parameters are often collected in the form of time series. In this paper, we describe a novel framework for retrieving cases with time series features, relying on Temporal Abstractions. With respect to more classical (mathematical) approaches, our framework provides significant advantages. In particular, multi-level abstraction mechanisms and proper indexing techniques allow for flexible query issuing, and for efficient and interactive query answering. The framework is currently being applied to the hemodialysis domain. In this field, experimental results have shown the superiority of our approach with respect to the use of a classical mathematical technique in flexibility, user friendliness, and also quality of results.

Tests in other application domains, as well as further enhancements, are foreseen in our future work.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   49.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Aamodt, A., Plaza, E.: Case-based reasoning: foundational issues, methodological variations and systems approaches. AI Communications 7, 39–59 (1994)

    Google Scholar 

  2. Agrawal, R., Faloutsos, C., Swami, A.: Efficient Similarity Search in Sequence Databases. In: Lomet, D.B. (ed.) FODO 1993. LNCS, vol. 730, pp. 69–84. Springer, Heidelberg (1993)

    Chapter  Google Scholar 

  3. Bellazzi, R., Larizza, C., Magni, P., Montani, S., Stefanelli, M.: Intelligent analysis of clinical time series: an application in the diabetes mellitus domain. Artificial Intelligence in Medicine 20, 37–57 (2000)

    Article  Google Scholar 

  4. Bellazzi, R., Larizza, C., Riva, A.: Temporal abstractions for interpreting diabetic patients monitoring data. Intelligent Data Analysis 2, 97–122 (1998)

    Article  Google Scholar 

  5. Bergmann, R., Stahl, A.: Similarity Measures for Object-Oriented Case Representations. In: Smyth, B., Cunningham, P. (eds.) EWCBR 1998. LNCS (LNAI), vol. 1488, pp. 25–36. Springer, Heidelberg (1998)

    Chapter  Google Scholar 

  6. Bichindaritz, I., Conlon, E.: Temporal knowledge representation and organization for case-based reasoning. In: Proc. TIME 1996, pp. 152–159. IEEE Computer Society Press, Washington, DC (1996)

    Google Scholar 

  7. Branting, L.K., Hastings, J.D.: An empirical evaluation of model-based case matching and adaptation. In: Proc. Workshop on Case-Based Reasoning, AAAI 1994 (1994)

    Google Scholar 

  8. Chan, K.P., Fu, A.W.C.: Efficient time series matching by wavelets. In: Proc. ICDE 1999, pp. 126–133. IEEE Computer Society Press, Washington, DC (1999)

    Google Scholar 

  9. Combi, C., Pozzi, G., Rossato, R.: Querying temporal clinical databases on granular trends. Journal of Biomedical Informatics 45(2), 273–291 (2012)

    Article  Google Scholar 

  10. Daw, C.S., Finney, C.E., Tracy, E.R.: Symbolic analysis of experimental data. Review of Scientific Instruments (July 22, 2002) (2001)

    Google Scholar 

  11. Fuch, B., Mille, A., Chiron, B.: Operator Decision Aiding by Adaptation of Supervision Strategies. In: Aamodt, A., Veloso, M.M. (eds.) ICCBR 1995. LNCS (LNAI), vol. 1010, pp. 23–32. Springer, Heidelberg (1995)

    Chapter  Google Scholar 

  12. Funk, P., Xiong, N.: Extracting Knowledge from Sensor Signals for Case-Based Reasoning with Longitudinal Time Series Data. In: Perner, P. (ed.) Case-Based Reasoning in Signals and Images. SCI, vol. 73, pp. 247–284. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  13. Hetland, M.L.: A survey of recent methods for efficient retrieval of similar time sequences. In: Last, M., Kandel, A., Bunke, H. (eds.) Data Mining in Time Series Databases. World Scientific, London (2003)

    Google Scholar 

  14. Inrig, J.K., Patel, U.D., Toto, R.D., Szczech, L.A.: Association of blood pressure increases during hemodialysis with 2-year mortality in incident hemodialysis patients: A secondary analysis of the dialysis morbidity and mortality wave 2 study. American Journal of Kidney Diseases 54(5), 881–890 (2009)

    Article  Google Scholar 

  15. Jaczynski, M.: A framework for the management of past experiences with time-extended situations. In: Proc. ACM Conference on Information and Knowledge Management (CIKM 1997), pp. 32–38. ACM Press, New York (1997)

    Google Scholar 

  16. Jære, M.D., Aamodt, A., Skalle, P.: Representing Temporal Knowledge for Case-Based Prediction. In: Craw, S., Preece, A. (eds.) ECCBR 2002. LNCS (LNAI), vol. 2416, pp. 174–188. Springer, Heidelberg (2002)

    Chapter  Google Scholar 

  17. Kadar, S., Wang, J., Showalter, K.: Noise-supported travelling waves in sub-excitable media. Nature 391, 770–772 (1998)

    Article  Google Scholar 

  18. Keogh, E., Chakrabarti, K., Pazzani, M., Mehrotra, S.: Dimensionality reduction for fast similarity search in large time series databases. Knowledge and Information Systems 3(3), 263–286 (2000)

    Article  Google Scholar 

  19. Keravnou, E.T.: Modeling Medical Concepts as Time Objects. In: Wyatt, J.C., Stefanelli, M., Barahona, P. (eds.) AIME 1995. LNCS (LNAI), vol. 934, pp. 67–90. Springer, Heidelberg (1995)

    Chapter  Google Scholar 

  20. Lin, J., Keogh, E., Lonardi, S., Chiu, B.: A symbolic representation of time series, with implications for streaming algorithms. In: Proc. of ACM-DMKD, San Diego (2003)

    Google Scholar 

  21. Ma, J., Knight, B.: A Framework for Historical Case-Based Reasoning. In: Ashley, K.D., Bridge, D.G. (eds.) ICCBR 2003. LNCS (LNAI), vol. 2689, pp. 246–260. Springer, Heidelberg (2003)

    Chapter  Google Scholar 

  22. Miksch, S., Horn, W., Popow, C., Paky, F.: Utilizing temporal data abstractions for data validation and therapy planning for artificially ventilated newborn infants. Artificial Intelligence in Medicine 8, 543–576 (1996)

    Article  Google Scholar 

  23. Montani, S., Bottrighi, A., Leonardi, G., Portinale, L.: A cbr-based, closed loop architecture for temporal abstractions configuration. Computational Intelligence 25(3), 235–249 (2009)

    Article  MathSciNet  Google Scholar 

  24. Montani, S., Portinale, L.: Accounting for the temporal dimension in case-based retrieval: a framework for medical applications. Computational Intelligence 22, 208–223 (2006)

    Article  MathSciNet  Google Scholar 

  25. Montani, S., Portinale, L., Leonardi, G., Bellazzi, R., Bellazzi, R.: Case-based retrieval to support the treatment of end stage renal failure patients. Artificial Intelligence in Medicine 37, 31–42 (2006)

    Article  Google Scholar 

  26. Nakhaeizadeh, G.: Learning Prediction from Time Series: A Theoretical and Empirical Comparison of CBR with some other Approaches. In: Wess, S., Richter, M., Althoff, K.-D. (eds.) EWCBR 1993. LNCS (LNAI), vol. 837, pp. 65–76. Springer, Heidelberg (1994)

    Chapter  Google Scholar 

  27. Nilsson, M.: Retrieving short and dynamic biomedical sequences. In: Proc. 18th International Florida Artificial Intelligence Research Society Conference–Special Track on Case-Based Reasoning. AAAI Press (2005)

    Google Scholar 

  28. Nilsson, M., Funk, P., Olsson, E., von Scheele, B., Xiong, N.: Clinical decision-support for diagnosing stress-related disorders by applying psychophysiological medical knowledge to an instance-based learning system. Artificial Intelligence in Medicine 36, 159–176 (2006)

    Article  Google Scholar 

  29. Nilsson, M., Funk, P., Xiong, N.: Clinical decision support by time series classification using wavelets. In: Chen, C.S., Filipe, J., Seruca, I., Cordeiro, J. (eds.) Proc. Seventh International Conference on Enterprise Information Systems (ICEIS 2005), pp. 169–175. INSTICC Press (2005)

    Google Scholar 

  30. Palma, J., Juarez, J.M., Campos, M., Marin, R.: A fuzzy approach to temporal model-based diagnosis for intensive care units. In: Lopez de Mantaras, R., Saitta, L. (eds.) Proc. European Conference on Artificial Intelligence (ECAI 2004), pp. 868–872. IOS Press, Amsterdam (2004)

    Google Scholar 

  31. Portinale, L., Montani, S., Bottrighi, A., Leonardi, G., Juarez, J.: A case-based architecture for temporal abstraction configuration and processing. In: Proc. IEEE International Conference on Tools with Artificial Intelligent (ICTAI), pp. 667–674. IEEE Computer Society, Los Alamitos (2006)

    Google Scholar 

  32. Ram, A., Santamaria, J.C.: Continuous case-based reasoning. In: Proc. AAAI Case-Based Reasoning Workshop, pp. 86–93 (1993)

    Google Scholar 

  33. Resnik, P.: Using information content to evaluate semantic similarity in a taxonomy. In: Proc. IJCAI, pp. 448–453 (1995)

    Google Scholar 

  34. Rougegrez, S.: Similarity Evaluation Between Observed Behaviours for the Prediction of Processes. In: Wess, S., Richter, M., Althoff, K.-D. (eds.) EWCBR 1993. LNCS (LNAI), vol. 837, pp. 155–166. Springer, Heidelberg (1994)

    Chapter  Google Scholar 

  35. Shahar, Y.: A framework for knowledge-based temporal abstractions. Artificial Intelligence 90, 79–133 (1997)

    Article  MATH  Google Scholar 

  36. Shahar, Y., Musen, M.A.: Knowledge-based temporal abstraction in clinical domains. Artificial Intelligence in Medicine 8, 267–298 (1996)

    Article  Google Scholar 

  37. Stacey, M.: Knowledge based temporal abstractions within the neonatal intesive care domain. In: Proc. CSTE Innovation Conference, University of Western Sidney (2005)

    Google Scholar 

  38. Terenziani, P., German, E., Shahar, Y.: The temporal aspects of clinical guidelines. In: Ten Teije, A., Miksch, S., Lucas, P. (eds.) Computer-based Medical Guidelines and Protocols: A Primer and Current Trends (2008)

    Google Scholar 

  39. Xia, B.B.: Similarity search in time series data sets. Technical report, School of Computer Science, Simon Fraser University (1997)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Montani, S., Leonardi, G., Bottrighi, A., Portinale, L., Terenziani, P. (2013). Flexible and Efficient Retrieval of Haemodialysis Time Series. In: Lenz, R., Miksch, S., Peleg, M., Reichert, M., Riaño, D., ten Teije, A. (eds) Process Support and Knowledge Representation in Health Care. ProHealth KR4HC 2012 2012. Lecture Notes in Computer Science(), vol 7738. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-36438-9_11

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-36438-9_11

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-36437-2

  • Online ISBN: 978-3-642-36438-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics