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Elastic Demons: Characterizing Cortical Development in Neonates Using an Implicit Surface Registration

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Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 7570))

Abstract

We present an approach for nonrigid registration of consecutive neonatal cortical surfaces from MR images acquired at 30 and 40 week corrected gestational ages. Surfaces are registered implicitly using a method based on the Demons algorithm. Our key innovation is removing the Gaussian smoothing term in Demons in favor of an elasticity constraint that simultaneously promotes more realistic deformations and smooths the deformation field. This is advantageous because the constraint smooths the deformation field along the surface rather than across it. Therefore, fine deformations, such as those necessary to characterize small, new cortical folds, are preserved. The estimated deformation fields are then used to characterize brain development.

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References

  1. Awate, S., Yushkevich, P., Song, Z., Licht, D., Gee, J.: Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development. Neuroimage 53(2), 450–459 (2010)

    Article  Google Scholar 

  2. Dubois, J., Benders, M., Cachia, A., Lazeyras, F., Ha-Vinh Leuchter, R., Sizonenko, S.V., Borradori-Tolsa, C., Mangin, J.F., Hüppi, P.S.: Mapping the early cortical folding process in the preterm newborn brain. Cerebral Cortex 18, 1444–1454 (2008)

    Article  Google Scholar 

  3. Nordahl, C.W., Dierker, D., Mostafavi, I., Schumann, C.M., Rivera, S.M., Amaral, D.G., van Essen, D.C.: Cortical folding abnormalities in autism revealed by surface-based morphometry. Journal of Neuroscience 27(43), 11725–11735 (2007)

    Article  Google Scholar 

  4. Yu, P., Grant, P., Qi, Y., Han, X., Segonne, F., Pienaar, R., Busa, E., Pacheco, J., Makris, N., Buckner, R., Golland, P., Fischl, B.: Cortical surface shape analysis based on spherical wavelets. IEEE Transactions on Medical Imaging 26(4), 582–597 (2007)

    Article  Google Scholar 

  5. Thomas Yeo, B.T., Yu, P., Grant, P.E., Fischl, B., Golland, P.: Shape Analysis with Overcomplete Spherical Wavelets. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part I. LNCS, vol. 5241, pp. 468–476. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  6. Rodriguez-Carranza, C.E., Mukherjee, P., Vigneron, D., Barkovich, J., Studholme, C.: A framework for in-vivo quantification of regional brain folding in premature neonates. Neuroimage 41(2), 462–478 (2008)

    Article  Google Scholar 

  7. Pienaar, R., Fischl, B., Caviness, V., Makris, N., Grant, P.E.: A methodology for analyzing curvature in the developing brain from preterm to adult. International Journal of Imaging Systems Technology 18, 42–68 (2008)

    Article  Google Scholar 

  8. Aljabar, P., Bhatia, K., Murgasova, M., Hajnal, J., Boardman, J., Srinivasan, L., Rutherford, M., Dyet, L., Edwards, A., Rueckert, D.: Assessment of brain growth in early childhood using deformation-based morphometry. Neuroimage 39(1), 348–358 (2008)

    Article  Google Scholar 

  9. Aljabar, P., Wolz, R., Srinivasan, L., Counsell, S., Rutherford, M., Edwards, A., Hajnal, J., Rueckert, D.: A combined manifold learning analysis of shape and appearance to characterize neonatal brain development. IEEE Transactions on Medical Imaging 30(12), 2072–2086 (2011)

    Article  Google Scholar 

  10. Huang, X., Paragios, N., Metaxas, D.: Shape registration in implicit spaces using information theory and free form deformations. IEEE Transactions on Pattern Analysis and Machine Intelligence 28(8), 1303–1318 (2006)

    Article  Google Scholar 

  11. Mansi, T., Pennec, X., Sermesant, M., Delingette, H., Ayache, N.: ilogdemons: A demons-based registration algorithm for tracking incompressible elastic biological tissues. International Journal of Computer Vision 92(1), 92–111 (2011)

    Article  Google Scholar 

  12. Kwan, R.S., Evans, A., Pike, G.: Mri simulation-based evaluation of image-processing and classification methods. IEEE Transactions on Medical Imaging 18(11), 1085–1097 (1999)

    Article  Google Scholar 

  13. Shattuck, D.W., Prasad, G., Mirza, M., Narr, K.L., Toga, A.W.: Online resource for validation of brain segmentation methods. NeuroImage 45(2), 431–439 (2009)

    Article  Google Scholar 

  14. Klein, S., Staring, M., Murphy, K., Viergever, M., Pluim, J.: elastix: A toolbox for intensity-based medical image registration. IEEE Transactions on Medical Imaging 29(1), 196–205 (2010)

    Article  Google Scholar 

  15. Wang, H., Dong, L., O’Daniel, J., Mohan, R., Garden, A.S., Ang, K.K., Kuban, D.A., Bonnen, M., Chang, J.Y., Cheung, R.: Validation of an accelerated ’demons’ algorithm for deformable image registration in radiation therapy. Physics in Medicine and Biology 50(12), 2887–2905 (2005)

    Article  Google Scholar 

  16. Thirion, J.P.: Image matching as a diffusion process: an analogy with maxwell’s demons. Medical Image Analysis 2(3), 243–260 (1998)

    Article  Google Scholar 

  17. Lüthi, M., Albrecht, T., Vetter, T.: Curvature guided surface registration using level sets. In: Proceedings of CARS, pp. 126–128 (2007)

    Google Scholar 

  18. van Essen, D.: A tension-based theory of morphogenesis and compact wiring in the central nervous system. Nature 23, 313–318 (1997)

    Article  Google Scholar 

  19. Toro, R., Burnod, Y.: A morphogenetic model for the development of cortical convolutions. Cerebral Cortex 15, 1900–1913 (2005)

    Article  Google Scholar 

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© 2012 Springer-Verlag Berlin Heidelberg

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Pearlman, P.C., Išgum, I., Kersbergen, K.J., Benders, M.J.N.L., Viergever, M.A., Pluim, J.P.W. (2012). Elastic Demons: Characterizing Cortical Development in Neonates Using an Implicit Surface Registration. In: Durrleman, S., Fletcher, T., Gerig, G., Niethammer, M. (eds) Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data. STIA 2012. Lecture Notes in Computer Science, vol 7570. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-33555-6_4

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  • DOI: https://doi.org/10.1007/978-3-642-33555-6_4

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-33554-9

  • Online ISBN: 978-3-642-33555-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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