Skip to main content

eBi – The Algorithm for Exact Biclustering

  • Conference paper

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 7268))

Abstract

This article presents an algorithm for finding exact and overlapping biclusters, all covered by the same discrete value. It can be very useful to analyse data where the key task is finding which objects (elements in rows) across subset of attributes (elements in columns) have the same value in case of discrete data or belong to this same discrete state in case of continuous data.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Ben-Dor, A., Chor, B., Karp, R., Yakhini, Z.: Discovering Local Structure in Gene Expression Data: The Order-Preserving Sub-Matrix Problem. J. of Comput. Biol. 10(3-4), 373–384 (2003)

    Article  Google Scholar 

  2. Chang, F.C., Huang, H.C.: A refactoring method for cache-efficient swarm intelligence algorithms Inf. Sci. (2010) (in press), (corrected proof), doi: 10.1016/j.ins.2010.02.025

    Google Scholar 

  3. Cheng, Y., Church, G.M.: Biclustering of expression data. In: Proc of the 8th Int. Conf. on Intell. Syst. for Mol. Biol., pp. 93–103 (2000)

    Google Scholar 

  4. Hartigan, J.A.: Direct Clustering of a Data Matrix. J. Am. Stat. Assoc. 67(337), 123–129 (1972)

    Google Scholar 

  5. Michalak, M., Stawarz, M.: Generating and Postprocessing of Biclusters from Discrete Value Matrices. In: Jędrzejowicz, P., Nguyen, N.T., Hoang, K. (eds.) ICCCI 2011, Part I. LNCS, vol. 6922, pp. 103–112. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  6. Pensa, R., Boulicaut, J.F.: Constrained Co-clustering of Gene Expression Data. In: Proc. SIAM Int. Conf. on Data Min., SDM 2008, pp. 25–36 (2008)

    Google Scholar 

  7. Sayoud, H., Ouamour, S.: Speaker Clustering of Stereo Audio Documents Based on Sequential Gathering Process. J. of Inf. Hiding. and Multimed. Signal Process. 4, 344–360 (2010)

    Google Scholar 

  8. Sikora, M.: Filtering of decision rules using rules quality function. Stud. Inform. 4(46), 5–21 (2001)

    Google Scholar 

  9. Yang, E., Foteinou, P.T., King, K.R., Yarmush, M.L., Androulakis, I.P.: A Novel Non-overlapping biclustering Algorithm for Network Generation Using Living Cell Array Data. Bioinforma. 17(23), 2306–2313 (2007)

    Article  Google Scholar 

  10. Murali, T.M., Kasif, S.: Extracting Conserved Gene Expression Motifs from Gene Expression Data. In: Pacific Symposium on Biocomputing, pp. 77–88 (2003)

    Google Scholar 

  11. Madeira, S.C., Oliveira, A.L.: Biclustering Algorithms for Biological Data Analysis: A Survey. IEEE/ACM Trans. on Comput. Biol. and Bioinforma. 1, 24–45 (2004)

    Article  Google Scholar 

  12. Prelić, A., Bleuler, S., Zimmermann, P., Wille, A., Bühlmann, P., Gruissem, W., Hennig, L., Thiele, L., Zitzler, E.: A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics 22, 1122–1129 (2006)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Stawarz, M., Michalak, M. (2012). eBi – The Algorithm for Exact Biclustering. In: Rutkowski, L., Korytkowski, M., Scherer, R., Tadeusiewicz, R., Zadeh, L.A., Zurada, J.M. (eds) Artificial Intelligence and Soft Computing. ICAISC 2012. Lecture Notes in Computer Science(), vol 7268. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-29350-4_39

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-29350-4_39

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-29349-8

  • Online ISBN: 978-3-642-29350-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics