Abstract
Alzheimer’s disease (AD) is a type of dementia that causes problems with memory, thinking and behaviour. It has been discovered that APP (amyloid precursor protein) is a precusor molecule whose proteolysis generate amyloid ß (Aß) amino acid peptide. Aß is an amyloidogenic peptide that forms senile plaques found in the brains of AD. Evidence suggests that senile plaques are formed due to the activation of Caspases particulary caspases CASP 3 and CASP 4. Bacopa monneri has been in use since early as a brain tonic to enhance memory development, however how the components of Bacopa monneri function is yet unknown .In this paper an attempt has been made to establish the components activities insilico with CASP 3. We found that among the screened seven compounds Ligand 6 interacts potentially with CASP 3 and has passed all the properties of drug with drug likeliness 0.95, drug score 0.69 , highly soluble, highly permeable, non mutagenic, non tumerogenic and non irritant.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Brown, R.C., Lockwood, A.H., Sonawane, B.R.: Neurodegenerative Diseases: An Overview of Environmental Risk Factors. Environmental Health Perspectives 113(9), 1250–1256 (2005); © 2005 National Institute of Environmental Health Sciences
Rohn, T.T., Head, E.: Caspases as Therapeutic Targets in Alzheimer’s disease: Is It Time to “Cut” to the Chase? Int. J. Clin. Exp. Pathol. 2(2), 108–118 (2009); published online (June 10, 2008)
Selkoe, D.J.: Alzheimer’s Disease: Genes, Proteins, and Therapy. Physiological Reviews 81(2) (April 2001)
Rohn, T.T.: The role of caspases in Alzheimer’s disease; potential novel therapeutic opportunities. Apoptosis 15(11), 1403–1409 (2010)
Rohn, T.T., Head, E.: Caspase activation in Alzheimer’s disease: early to rise and late to bed. Rev. Neurosci. 19(6), 383–393 (2008)
KEGG, www.genome.jp/keggbin/highlight_pathway/map05012/parkinson's
Drug treatments for Alzheimer’s disease. Alzheimer’s Society
Kartika, B., et al.: Herbal treatment of Parkinsons: A review. IISPRR 5(3), article-034 (December 2010)
Bacopa monniera: Monograph. Alternative Medicine Review 9(1), 79–85 (2004), www.thorne.com/altmedrev/.fulltext/9/1/79.pdf
National Center for Biotechnology Information, www.ncbi.nlm.nih.gov
Protein Data Bank, http://www.rcsb.org/pdb/home/home.do
Thomsen, R., Christensen, M.H.: MolDock: A New Technique for High-Accuracy Molecular Docking. J. Med. Chem. 49(11), 3315–3321 (2006)
Gehlhaar, D.K., Verkhivker, G., Rejto, P.A., Fogel, D.B., Fogel, L.J., Freer, S.T.: Docking Conformationally Flexible Small Molecules Into a Protein Binding Site Through Evolutionary Programming. In: Proceedings of the Fourth International Conference on Evolutionary Programming, pp. 615–627 (1995)
Chem Spider, www.chemspider.com
OSIRIS Property Explorer, http://www.organicchemistry.org/prog/peo/
Molinspiration, www.molinspiration.com
Trott, O., Olson, A.J.: AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading. Journal of Computational Chemistry 31, 455–461 (2010)
Mervin Sketch Suite, http://www.chemaxon.com/products/marvin/marvinsketch/
Randic, M.: Chem. Phys. Lett. 211, 478–483 (1993)
Lucic, B., Lukovits, I., Nikolic, S., Trinajstic, N.: J. Chem. Inf. Comput. Sci. 41(3), 527–535 (2001)
PyMol a Molecular Visualization System, http://www.pymol.org/
Jouyban, A., Fakhree, M.A.A., Shayanfar, A.: Solubility Prediction Methods for Drug/Drug Like Molecules. Recent Patents on Chemical Engineering 1, 220–231 (2008)
Gertz, M., Kilford, P.J., Houston, J.B., Galetin, A.: Drug Lipophilicity and Microsomal Protein Concentration as Determinants in the Prediction of the Fraction Unbound in Microsomal Incubations. Drug Metabolism and Disposition 36(3), 0090-9556/08/3603-535–542
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Johari, S., Sinha, S., Bora, S., Biswas, S., Gupta, K. (2012). Ligand Binding Studies of Caspase 3 Protein with Compounds of Bacopa monneri - A Target Protein Responsible for Alzheimer’s Disease (AD). In: Krishna, P.V., Babu, M.R., Ariwa, E. (eds) Global Trends in Computing and Communication Systems. ObCom 2011. Communications in Computer and Information Science, vol 269. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-29219-4_5
Download citation
DOI: https://doi.org/10.1007/978-3-642-29219-4_5
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-29218-7
Online ISBN: 978-3-642-29219-4
eBook Packages: Computer ScienceComputer Science (R0)