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Spiking Neural P System Simulations on a High Performance GPU Platform

  • Francis George Cabarle
  • Henry Adorna
  • Miguel A. Martínez-del-Amor
  • Mario J. Pérez-Jiménez
Part of the Lecture Notes in Computer Science book series (LNCS, volume 7017)

Abstract

In this paper we present our results in adapting a Spiking Neural P system (SNP system) simulator to a high performance graphics processing unit (GPU) platform. In particular, we extend our simulations to larger and more complex SNP systems using an NVIDIA Tesla C1060 GPU. The C1060 is manufactured for high performance computing and massively parallel computations, matching the maximally parallel nature of SNP systems. Using our GPU accelerated simulations we present speedups of around 200× for some SNP systems, compared to CPU only simulations.

Keywords

Membrane computing Spiking Neural P systems GPU computing CUDA parallel computing 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2011

Authors and Affiliations

  • Francis George Cabarle
    • 1
  • Henry Adorna
    • 1
  • Miguel A. Martínez-del-Amor
    • 2
  • Mario J. Pérez-Jiménez
    • 2
  1. 1.Algorithms & Complexity Lab, Department of Computer ScienceUniversity of the Philippines DilimanQuezon CityPhilippines
  2. 2.Research Group on Natural Computing, Department of Computer Science and Artificial IntelligenceUniversity of SevilleSevillaSpain

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