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International Conference Image Analysis and Recognition

ICIAR 2011: Image Analysis and Recognition pp 132–140Cite as

Classifying Data Considering Pairs of Patients in a Relational Space

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Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 6753))

Abstract

In this paper, we demonstrate the use of relational space to classify microarray gene expression data. We also show that the transformation of real valued data to binary data is able to produce better class separation with fewer genes.

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References

  1. van’t Veer, L.J., Dai, H., van de Vijver, M.J., He, Y.D., Kerkhoven, A.M., Roberts, C., Linsley, P.S., Bernards, R., Friend, S.H.: Gene expression profiling predicts clinical outcome of breast cancer. Nature 415, 530–536 (2002)

    Article  Google Scholar 

  2. Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., Bloomfield, C.D., Lander, E.S.: Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring. Science 286, 531–537 (1999)

    Article  Google Scholar 

  3. Alon, U., Barkai, N., Notterman, D.A., Gish, K., Ybarra, S., Mack, D., Levine, A.J.: Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. PNAS 96(12), 6745–6750 (1999)

    Article  Google Scholar 

  4. Furey, T.S., Cristianini, N., Duffy, N., Bednarski, D.W., Schummer, M., Haussler, D.: Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics 16(10), 906–914 (2000)

    Article  Google Scholar 

  5. Quackenbush, J.: Computational analysis of microarray data. Nat. Rev. Genet. 2, 418–427 (2001)

    Article  Google Scholar 

  6. Dudoit, S., Fridlyand, J., Speed, T.P.: Comparison of discrimination methods for the classification of tumors using gene expression data. Journal of the American Statistical Association 97, 77–87 (2002)

    Article  MathSciNet  MATH  Google Scholar 

  7. Pintus, P., Petrou, M.: Relational space classification for malaria diagnosis. Pattern Analysis and Applications, under review (2008)

    Google Scholar 

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Author information

Authors and Affiliations

  1. Dept. of Electrical & Electronic Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK

    Siti Mariam Shafie & Maria Petrou

  2. Dept. of Computer and Communication Systems Engineering, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia

    Siti Mariam Shafie

Authors
  1. Siti Mariam Shafie
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  2. Maria Petrou
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Editor information

Editors and Affiliations

  1. Department of Electrical and Computer Engineering, University of Waterloo, N2L 3G1, Waterloo, ON, Canada

    Mohamed Kamel

  2. Faculty of Engineering, Institute of Biomedical Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal

    Aurélio Campilho

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© 2011 Springer-Verlag Berlin Heidelberg

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Shafie, S.M., Petrou, M. (2011). Classifying Data Considering Pairs of Patients in a Relational Space. In: Kamel, M., Campilho, A. (eds) Image Analysis and Recognition. ICIAR 2011. Lecture Notes in Computer Science, vol 6753. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-21593-3_14

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  • DOI: https://doi.org/10.1007/978-3-642-21593-3_14

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-21592-6

  • Online ISBN: 978-3-642-21593-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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