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Rice Endophytic Diazotrophic Bacteria

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Plant Growth and Health Promoting Bacteria

Part of the book series: Microbiology Monographs ((MICROMONO,volume 18))

Abstract

The extension of nitrogen-fixing symbioses to cultivated rice has been a long-standing goal in the field of biological nitrogen fixation. Endophytic bacteria have been found in virtually every plant studied, where they colonize the internal tissues of their host plant and do not cause any harmful effect to their host plant. Therefore, there is a need to use endophytic diazotrophic bacteria that can make biologically fixed nitrogen available for the growth of rice plants. However, prior to introducing any selected endophytic diazotrophic strain into rice plant, the port of entry of the endophytic bacteria, the interaction via this bacteria and their host plant should be clarified. Furthermore, the complexity of bacterial community such as the behavior of native species inside the rice tissue and their interaction with inoculated endophytic strain should be clearly demonstrated. Moreover, the mechanism of plant response to those of bacteria should also be revealed. Consequently, the diversity of endophytic diazotrophic bacteria, the colonization sites and infection pathways, the effect of diazotrophic bacteria on rice growth, as well as the complexity of endophytic diazotrophic bacteria community structure will be reviewed and discussed in this chapter.

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References

  • Balandreau J (1986) Ecological factors and adaptive processes in N2-fixing bacterial populations of the plant environment. Plant Soil 90:73–92

    Article  Google Scholar 

  • Baldani J, Caruso L, Baldani VLD, Goi SR, Dobereiner J (1997) Recent advances in BNF with non-legume plants. Soil Biol Biochem 29:911–922

    Article  CAS  Google Scholar 

  • Baldani VLD, Baldani JI, Döbereiner J (2000) Inoculation of rice plants with the endophytic diazotrophs Herbaspirillum seropedicae and Burkholderia spp. Biol Fertil Soils 30:485–491

    Article  Google Scholar 

  • Barraquio WL, Revilla L, Ladha JK (1997) Isolation of endophytic diazotrophic bacteria from wetland rice. Plant Soil 194:15–24

    Article  CAS  Google Scholar 

  • Bastián F, Cohen A, Piccoli P, Luna V, Bottini R, Baraldi R, Bottini R (1998) Production of indole-3-acetic acid and gibberellins A 1 and A 3 by Acetobacter diazotrophicus and Herbaspirillum seropedicae in chemically-defined culture media. J Plant Growth Regul 24:7–11

    Article  Google Scholar 

  • Campbell R, Greaves MP (1990) The rhizosphere. Wiley, Chichester, England

    Google Scholar 

  • Cavalcante VA, Dobereiner J (1988) A new acid-tolerant nitrogen-fixing bacterium associated with sugarcane. Plant Soil 108:23–31

    Article  Google Scholar 

  • Costacurta A, Vanderleyden J (1995) Synthesis of phytohormones by plant-associated bacteria. Crit Rev Microbiol 21:1–18

    Article  PubMed  Google Scholar 

  • Dobereiner J (1997) Biological nitrogen fixation in the tropics: social and economic contributions. Soil Biol Biochem 29:771–774

    Article  Google Scholar 

  • Downing KJ, Thomson JA (2000) Introduction of the Serratia marcescens chiA gene into an endophytic Pseudomonas fluorescens for the biocontrol of phytopathogenic fungi. Can J Microbiol 46:363–369

    PubMed  CAS  Google Scholar 

  • Egener T, Hurek T, Reinhold-Hurek B (1999) Endophytic expression of nif genes of Azoarcus sp. strain BH72 in rice roots. Mol Plant Microbe Interact 12:813–819

    Article  CAS  Google Scholar 

  • Feng Y, Shen D, Song W (2006) Rice endophyte Pantoea agglomerans YS19 promotes host plant growth and affects allocations of host photosynthates. J Appl Microbiol 100:938–945

    Article  PubMed  CAS  Google Scholar 

  • Fuentes-Ramirez LE, Caballero-Mellado J, Sepulveda J, Martinez-Romero E (1999) Colonization of sugarcane by Acetobacter diazotrophicus is inhibited by high N-fertilization. FEMS Microbiol Ecol 29:117–128

    Article  CAS  Google Scholar 

  • Fujii T, Huang YD, Higashitani A, Nishimura Y, Iyama S, Hirota Y, Yoneyama T, Dixon RA (1987) Effect of inoculation with Klebsiella oxytoca and Enterobacter cloacae on dinitrogen fixation by rice-bacteria associations. Plant Soil 103:221–226

    Article  CAS  Google Scholar 

  • Gagné S, Richard C, Rousseau H, Antoun H (1987) Xylem-residing bacteria in alfalfa roots. Can J Microbiol 33:996–1000

    Article  Google Scholar 

  • Gyaneshwar P, James EK, Mathan N, Reddy PM, Reinhold-Hurek B, Ladha JK (2001) Endophytic colonization of rice by a diazotrophic strain of Serratia marcescens. J Biotechnol 183:2634–2645

    Google Scholar 

  • Gyaneshwar P, James EK, Reddy PM, Ladha JK (2002) Herbaspirillum colonization increases growth and nitrogen accumulation in aluminium-tolerant rice varieties. New Phytol 154:131–145

    Article  CAS  Google Scholar 

  • Hallmann J, Quadt-Hallmann A, Mahaffee WF, Kloepper JW (1997) Bacterial endophytes in agricultural crops. Can J Microbiol 43:895–914

    Article  CAS  Google Scholar 

  • Hurek T, Reinhold-Hurek B, van Montagu M, Kellenberger E (1991) Infection of intact roots of Kallar grass and rice seedlings by Azoarcus. In: Polsinelli M, Materassi R, Vincenzini M (eds) Nitrogen fixation. Kluwer, Dordrecht, pp 235–242

    Chapter  Google Scholar 

  • Hurek T, Reinhold-Hurek B, Van Montagu M, Kellenberger E (1994) Root colonization and systemic spreading of Azoarcus sp. strain BH72 in grasses. Appl Environ Microbiol 176:1913–1923

    CAS  Google Scholar 

  • Hurek T, Wagner B, Reinhold-Hurek B (1997) Identification of N2-fixing plant- and fungus-associated Azoarcus species by PCR-based genomic fingerprints. Appl Environ Microbiol 63: 4331–4339

    PubMed  CAS  Google Scholar 

  • Hurek T, Handley LL, Reinhold-Hurek B, Piche Y (2002) Azoarcus grass endophytes contribute fixed nitrogen to the plant in an unculturable state. Mol Plant Microbe Interact 15: 233–242

    Article  PubMed  CAS  Google Scholar 

  • James EK (2000) Nitrogen fixation in endophytic and associative symbiosis. Field Crops Res 65:197–209

    Article  Google Scholar 

  • James EK, Olivares FL (1998) Infection and colonization of sugarcane and other Graminaceous plants by endophytic diazotrophs. Crit Rev Plant Sci 17:77–119

    Article  Google Scholar 

  • Kaga H, Mano H, Tanaka F, Watanabe A, Kaneko S, Morisaki H (2009) Rice seeds as sources of endophytic bacteria. Microbes Environ 24:154–162

    Article  PubMed  Google Scholar 

  • Kim JS, Dungan RS, Kwon SW, Weon HY (2006) The community composition of root-associated bacteria of the tomato plant. World J Microbiol Biotechnol 22:1267–1273

    Article  CAS  Google Scholar 

  • Ladha JK, Reddy PM (2003) Nitrogen fixation in rice systems: state of knowledge and future prospects. Plant Soil 252:151–167

    Article  CAS  Google Scholar 

  • Ladha JK, de Bruijn FJ, Malik KA (1997) Introduction: assessing opportunities for nitrogen fixation in rice – a frontier project. Plant Soil 194:1–10

    Article  CAS  Google Scholar 

  • Lindberg T, Granhall U, Tomenius K (1985) Infectivity and acetylene reduction of diazotrophic rhizosphere bacteria in wheat (Triticum aestivum) seedlings under gnotobiotic conditions. Biol Fertil Soils 1:123–129

    Article  Google Scholar 

  • Martin DE, Reinhold-Hurek B (2002) Distinct roles of PII-like signal transmitter proteins and amtB in regulation of nif gene expression, nitrogenase activity, and posttranslational modification of NifH in Azoarcus sp. strain BH72. J Bacteriol 184:2251–2259

    Article  PubMed  CAS  Google Scholar 

  • Minamisawa K, Nishioka K, Miyaki T, Ye B, Miyamoto T, You M, Saito A, Saito M, Barraquio WL, Teaumroong N, Sein T, Sato T (2004) Anaerobic nitrogen-fixing consortia consisting of Clostridia isolated from gramineous plants. Appl Environ Microbiol 70:3096–3102

    Article  PubMed  CAS  Google Scholar 

  • Muthukumarasamy R, Revathi G, Lakshminarasimhan C (1999) Influence of N fertilisation on the isolation of Acetobacter diazotrophicus and Herbaspirillum spp. from Indian sugarcane varieties. Biol Fertil Soils 29:157–164

    Article  CAS  Google Scholar 

  • Muthukumarasamy R, Kang UG, Park KD, Jeon WT, Park CY, Cho YS, Kwon SW, Song J, Roh DH, Revathi G (2007) Enumeration, isolation and identification of diazotrophs from Korean wetland rice varieties grown with long-term application of N and compost and their short-term inoculation effect on rice plants. J Appl Microbiol 102:981–991

    PubMed  CAS  Google Scholar 

  • Palus JA, Borneman J, Ludden PW, Triplett EW (1996) A diazotrophic bacterial endophyte isolated from stems of Zea mays L. and Zea luxurians Iltis and Doebley. Plant Soil 186: 135–142

    Article  CAS  Google Scholar 

  • Persello-Cartieaux F, Nussaume L, Robaglia C (2003) Tales from the underground: molecular. plant-rhizobacteria interactions. Plant Cell Environ 26:189–199

    Article  CAS  Google Scholar 

  • Petrini O (1991) Fungal endophytes of tree leaves. In: Andrews JH, Hirano SS (eds) Microbial ecology of leaves. Springer, New York, pp 179–197

    Chapter  Google Scholar 

  • Prakamhang J, Minamisawa K, Teamtaisong K, Boonkerd N, Teaumroong N (2009) The communities of endophytic diazotrophic bacteria in cultivated rice (Oryza sativa L.). Appl Soil Ecol 42:141–149

    Article  Google Scholar 

  • Reinhold-Hurek B, Hurek T (1998) Interactions of gramineous plants with Azoarcus spp. and other diazotrophs: identification, localization, and perspectives to study their function. Crit Rev Plant Sci 17:29–54

    Article  Google Scholar 

  • Reinhold-Hurek B, Maes T, Gemmer S, Van Montagu M, Hurek T (2006) An endoglucanase is involved in infection of rice roots by the not-cellulose-metabolizing endophyte Azoarcus sp. strain BH72. Mol Plant Microbe Interact 19:181–188

    Article  PubMed  CAS  Google Scholar 

  • Reis VM, Baldani JI, Baldani VLD, Dobereiner J (2000) Biological dinitrogen fixation in Gramineae and palm trees. Crit Rev Plant Sci 19:227–247

    Article  CAS  Google Scholar 

  • Remus R, Ruppel S, Jacob HJ, Hecht-Buchholz C, Merbach W (2000) Colonization behaviour of two enterobacterial strains on cereals. Biol Fertil Soils 30:550–557

    Article  Google Scholar 

  • Roesch LFW, Olivares FL, Pereira Passaglia LM, Selbach PA, de Sa ELS, de Camargo FAO (2006) Characterization of diazotrophic bacteria associated with maize: effect of plant genotype, ontogeny and nitrogen-supply. World J Microbiol Biotechnol 22:967–974

    Article  Google Scholar 

  • Roesti D, Ineichen K, Braissant O, Redecker D, Wiemken A, Aragno M (2005) Bacteria associated with spores of the arbuscular mycorrhizal fungi Glomus geosporum and Glomus constrictum. Appl Environ Microbiol 71:6673–6679

    Article  PubMed  CAS  Google Scholar 

  • Roncato-Maccari LDB, Ramos HJO, Pedrosa FO, Alquini Y, Chubatsu LS, Yates MG, Rigo LU, Steffens MBR, Souza EM (2003) Endophytic Herbaspirillum seropedicae expresses nif genes in gramineous plants. FEMS Microbiol Ecol 45:39–47

    Article  PubMed  CAS  Google Scholar 

  • Sandhiya GS, Sugitha TC, Balachandar D, Kumar K (2005) Endophytic colonization and in planta nitrogen fixation by a diazotrophic Serratia sp. in rice. Indian J Exp Biol 43:802–807

    PubMed  CAS  Google Scholar 

  • Schloter M, Hartmann A (1998) Endophytic and surface colonization of wheat roots (Triticum aestivum) by different Azospirillum brasilense strains studied with strain-specific monoclonal antibodies. Symbiosis 25:159–179

    Google Scholar 

  • Steenhoudt O, Vanderleyden J (2000) Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol Rev 24:487–506

    Article  PubMed  CAS  Google Scholar 

  • Stoltzfus JR, So R, Malarvithi PP, Ladha JK, de Bruijn FJ (1997) Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil 194:25–36

    Article  CAS  Google Scholar 

  • Teaumroong N, Teamtaisong K, Sooksa-ngun T, Boonkerd N (2001) The diazotrophic endophytic bacteria in Thai rice. In: Suriyaphan O, Hansakdi E, Jongruaysup S, Simons R (eds) Proceeding of the 5th ESAFS international conference on rice environments and rice products. Krabi, Thailand, pp 147–160

    Google Scholar 

  • Ueda T, Suga Y, Yahiro N, Matsuguchi T (1995) Remarkable N2-fixing bacterial diversity detected in rice roots by molecular evolutionary analysis of nifH gene sequences. J Biotechnol 177:1414–1417

    CAS  Google Scholar 

  • Verma SC, Ladha JK, Tripathi AK (2001) Evaluation of plant growth promoting and colonization ability of endophytic diazotrophs from deep water rice. J Biotechnol 91:127–141

    Article  PubMed  CAS  Google Scholar 

  • Verma SC, Singh A, Chowdhury SP, Tripathi AK (2004) Endophytic colonization ability of two deep-water rice endophytes. Pantoea sp. and Ochrobacterium sp. using green fluorescent protein reporter. Biotechnol Lett 26:425–429

    Article  PubMed  CAS  Google Scholar 

  • Watanabe I, Lin C (1984) Response of wetland rice to inoculation with Azospirillum lipoferum and Pseudomonas sp. Soil Sci Plant Nutr (Tokyo) 30:117–124

    Article  Google Scholar 

  • You C, Zhou F (1989) Non-nodular endorhizospheric nitrogen fixation in wetland rice. Can J Microbiol 35:403–408

    Article  CAS  Google Scholar 

  • You M, Nishiguchi T, Saito A, Isawa T, Mitsui H, Minamisawa K (2005) Expression of the nifH gene of a Herbaspirillum endophyte in wild rice species: daily rhythm during the light-dark cycle. Appl Environ Microbiol 71:8183–8190

    Article  PubMed  CAS  Google Scholar 

  • Zinniel DK, Lambrecht P, Harris NB, Feng Z, Kuczmarski D, Higley P, Ishimaru CA, Arunakumari A, Barletta RG, Vidaver AK (2002) Isolation and characterization of endophytic colonizing bacteria from agronomic crops and Prairie plants. Appl Environ Microbiol 68:2198–2208

    Article  PubMed  CAS  Google Scholar 

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Prakamhang, J., Boonkerd, N., Teaumroong, N. (2010). Rice Endophytic Diazotrophic Bacteria. In: Maheshwari, D. (eds) Plant Growth and Health Promoting Bacteria. Microbiology Monographs, vol 18. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-13612-2_14

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