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A Computational Comparison of Alternatives to Including Uncertainty in Structured Population Models,

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Three Decades of Progress in Control Sciences

Summary

Two conceptually different approaches to incorporate growth uncertainty into size-structured population models have recently been investigated. One entails imposing a probabilistic structure on all the possible growth rates across the entire population, which results in a growth rate distribution model. The other involves formulating growth as a Markov stochastic diffusion process, which leads to a Fokker-Planck model. Numerical computations verify that a Fokker-Planck model and a growth rate distribution model can, with properly chosen parameters, yield quite similar time dependent population densities. The relationship between the two models is based on the theoretical analysis in [7].

This research was supported in part (HTB and SH) by grant number R01AI071915-07 from the National Institute of Allergy and Infectious Diseases, in part (HTB and SH) by the Air Force Office of Scientific Research under grant number FA9550-09-1-0226 and in part (JLD) by the US Department of Energy Computational Science Graduate Fellowship under grant DE-FG02-97ER25308.

On the occasion of the 2009 Festschrift in honor of Chris Byrnes and Anders Lindquist.

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References

  1. Allen, L.J.S.: An Introduction to Stochastic Processes with Applications to Biology. Prentice Hall, New Jersey (2003)

    MATH  Google Scholar 

  2. Banks, H.T., Bihari, K.L.: Modelling and estimating uncertainty in parameter estimation. Inverse Problems 17, 95–111 (2001)

    Article  MathSciNet  MATH  Google Scholar 

  3. Banks, H.T., Bokil, V.A., Hu, S., Dhar, A.K., Bullis, R.A., Browdy, C.L., Allnutt, F.C.T.: Modeling shrimp biomass and viral infection for production of biological countermeasures, CRSC-TR05-45, NCSU, December, 2005. Mathematical Biosciences and Engineering 3, 635–660 (2006)

    Article  MathSciNet  MATH  Google Scholar 

  4. Banks, H.T., Bortz, D.M., Pinter, G.A., Potter, L.K.: Modeling and imaging techniques with potential for application in bioterrorism, CRSC-TR03-02, NCSU, January, 2003. In: Banks, H.T., Castillo-Chavez, C. (eds.) Bioterrorism: Mathematical Modeling Applications in Homeland Security. Frontiers in Applied Math, vol. FR28, pp. 129–154. SIAM, Philadelphia (2003)

    Chapter  Google Scholar 

  5. Banks, H.T., Botsford, L.W., Kappel, F., Wang, C.: Modeling and estimation in size structured population models, LCDS-CCS Report 87-13, Brown University. In: Proceedings 2nd Course on Mathematical Ecology, Trieste, December 8-12, 1986, pp. 521–541. World Press, Singapore (1988)

    Google Scholar 

  6. Banks, H.T., Davis, J.L.: Quantifying uncertainty in the estimation of probability distributions, CRSC-TR07-21, December, 2007. Math. Biosci. Engr. 5, 647–667 (2008)

    Article  MathSciNet  MATH  Google Scholar 

  7. Banks, H.T., Davis, J.L., Ernstberger, S.L., Hu, S., Artimovich, E., Dhar, A.K., Browdy, C.L.: A comparison of probabilistic and stochastic formulations in modeling growth uncertainty and variability, CRSC-TR08-03, NCSU, February, 2008. Journal of Biological Dynamics 3, 130–148 (2009)

    Article  MathSciNet  Google Scholar 

  8. Banks, H.T., Davis, J.L., Ernstberger, S.L., Hu, S., Artimovich, E., Dhar, A.K.: Experimental design and estimation of growth rate distributions in size-structured shrimp populations, CRSC-TR08-20, NCSU, November 2008. Inverse Problems (to appear)

    Google Scholar 

  9. Banks, H.T., Fitzpatrick, B.G., Potter, L.K., Zhang, Y.: Estimation of probability distributions for individual parameters using aggregate population data, CRSC-TR98-6, NCSU, January, 1998. In: McEneaney, W., Yin, G., Zhang, Q. (eds.) Stochastic Analysis, Control, Optimization and Applications, pp. 353–371. Birkhäuser, Boston (1998)

    Google Scholar 

  10. Banks, H.T., Fitzpatrick, B.G.: Estimation of growth rate distributions in size structured population models. Quart. Appl. Math. 49, 215–235 (1991)

    MathSciNet  MATH  Google Scholar 

  11. Banks, H.T., Hu, S.: An equivalence between nonlinear stochastic Markov processes and probabilistic structures on deterministic systems (in preparation)

    Google Scholar 

  12. Banks, H.T., Tran, H.T.: Mathematical and Experimental Modeling of Physical and Biological Processes. CRC Press, Boca Raton (2009)

    MATH  Google Scholar 

  13. Banks, H.T., Tran, H.T., Woodward, D.E.: Estimation of variable coefficients in the Fokker-Planck equations using moving node finite elements. SIAM J. Numer. Anal. 30, 1574–1602 (1993)

    Article  MathSciNet  MATH  Google Scholar 

  14. Bell, G., Anderson, E.: Cell growth and division I. A mathematical model with applications to cell volume distributions in mammalian suspension cultures. Biophysical Journal 7, 329–351 (1967)

    Article  Google Scholar 

  15. Chang, J.S., Cooper, G.: A practical difference scheme for Fokker-Planck equations. J. Comp. Phy. 6, 1–16 (1970)

    Article  MATH  Google Scholar 

  16. Gard, T.C.: Introduction to Stochastic Differential Equations. Marcel Dekker, New York (1988)

    MATH  Google Scholar 

  17. Gyllenberg, M., Webb, G.F.: A nonlinear structured population model of tumor growth with quiescence. J. Math. Biol. 28, 671–694 (1990)

    Article  MathSciNet  MATH  Google Scholar 

  18. Kot, M.: Elements of Mathematical Ecology. Cambridge University Press, Cambridge (2001)

    Book  Google Scholar 

  19. Luzyanina, T., Roose, D., Bocharov, G.: Distributed parameter identification for a label-structured cell population dynamics model using CFSE histogram time-series data. J. Math. Biol. (to appear)

    Google Scholar 

  20. Luzyanina, T., Roose, D., Schenkel, T., Sester, M., Ehl, S., Meyerhans, A., Bocharov, G.: Numerical modelling of label-structured cell population growth using CFSE distribution data. Theoretical Biology and Medical Modelling 4, 1–26 (2007)

    Article  Google Scholar 

  21. Metz, J.A.J., Diekmann, O. (eds.): The Dynamics of Physiologically Structured Populations. Lecture Notes in Biomathematics. Springer, Berlin (1986)

    MATH  Google Scholar 

  22. Okubo, A.: Diffusion and Ecological Problems: Mathematical Models. Lecture Notes in Biomathematics, vol. 10. Springer, Berlin (1980)

    MATH  Google Scholar 

  23. Richtmyer, R.D., Morton, K.W.: Difference Methods for Initial-value Problems. Wiley, New York (1967)

    MATH  Google Scholar 

  24. Sinko, J., Streifer, W.: A new model for age-size structure of a population. Ecology 48, 910–918 (1967)

    Article  Google Scholar 

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Banks, H.T., Davis, J.L., Hu, S. (2010). A Computational Comparison of Alternatives to Including Uncertainty in Structured Population Models, . In: Hu, X., Jonsson, U., Wahlberg, B., Ghosh, B. (eds) Three Decades of Progress in Control Sciences. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-11278-2_2

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  • DOI: https://doi.org/10.1007/978-3-642-11278-2_2

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