Automated Identification of Protein Structural Features

  • Chandrasekhar Mamidipally
  • Santosh B. Noronha
  • Sumantra Dutta Roy
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 5909)

Abstract

This paper proposes an iterative clustering procedure for finding protein motifs which do not necessarily correspond to secondary structures, or to features along the protein backbone. We show the applicability of our method to two important applications namely, protein structure matching, and automatically identifying active sites and other biologically significant sub-structures in proteins.

Keywords

Protein Motifs Robust Features Protein Structure Comparison Clustering Active sites Biologically Significant Substructures 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2009

Authors and Affiliations

  • Chandrasekhar Mamidipally
    • 1
  • Santosh B. Noronha
    • 1
  • Sumantra Dutta Roy
    • 2
  1. 1.Dept. of Chemical Engg.IIT Bombay, PowaiMumbaiIndia
  2. 2.Dept. of Electrical Engg.IIT Delhi, Hauz KhasNew DelhiIndia

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