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Using Topic Models to Interpret MEDLINE’s Medical Subject Headings

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AI 2009: Advances in Artificial Intelligence (AI 2009)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 5866))

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Abstract

We consider the task of interpreting and understanding a taxonomy of classification terms applied to documents in a collection. In particular, we show how unsupervised topic models are useful for interpreting and understanding MeSH, the Medical Subject Headings applied to articles in MEDLINE. We introduce the resampled author model, which captures some of the advantages of both the topic model and the author-topic model. We demonstrate how topic models complement and add to the information conveyed in a traditional listing and description of a subject heading hierarchy.

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References

  1. Lu, Z., Kim, W., Wilbur, W.J.: Evaluation of query expansion using mesh in pubmed. Inf. Retr. 12(1), 69–80 (2009)

    Article  Google Scholar 

  2. Blei, D.M., Ng, A.Y., Jordan, M.I.: Latent Dirichlet allocation. Journal of Machine Learning Research 3, 993–1022 (2003)

    Article  MATH  Google Scholar 

  3. Griffiths, T., Steyvers, M.: Finding scientific topics. Proceedings of the National Academy of Sciences 101, 5228–5235 (2004)

    Article  Google Scholar 

  4. Buntine, W.L., Jakulin, A.: Applying discrete pca in data analysis. In: UAI, pp. 59–66 (2004)

    Google Scholar 

  5. Rosen-Zvi, M., Griffiths, T.L., Steyvers, M., Smyth, P.: The author-topic model for authors and documents. In: UAI, pp. 487–494 (2004)

    Google Scholar 

  6. Herskovic, J.R., Tanaka, L.Y., Hersh, W., Bernstam, E.V.: A day in the life of pubmed: analysis of a typical day’s query log. J. Am. Med. Inform. Assoc. 14(2), 212–220 (2007)

    Article  Google Scholar 

  7. Lin, J., Wilbur, W.J.: Modeling actions of pubmed users with n-gram language models. Inf. Retr. 12(4), 487–503 (2009)

    Article  Google Scholar 

  8. Mörchen, F., Dejori, M., Fradkin, D., Etienne, J., Wachmann, B., Bundschus, M.: Anticipating annotations and emerging trends in biomedical literature. In: KDD, pp. 954–962 (2008)

    Google Scholar 

  9. Snow, R., Jurafsky, D., Ng, A.Y.: Semantic taxonomy induction from heterogenous evidence. In: ACL, pp. 801–808 (2006)

    Google Scholar 

  10. Chemudugunta, C., Smyth, P., Steyvers, M.: Combining concept hierarchies and statistical topic models. In: CIKM, pp. 1469–1470 (2008)

    Google Scholar 

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© 2009 Springer-Verlag Berlin Heidelberg

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Newman, D., Karimi, S., Cavedon, L. (2009). Using Topic Models to Interpret MEDLINE’s Medical Subject Headings. In: Nicholson, A., Li, X. (eds) AI 2009: Advances in Artificial Intelligence. AI 2009. Lecture Notes in Computer Science(), vol 5866. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-10439-8_28

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  • DOI: https://doi.org/10.1007/978-3-642-10439-8_28

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-10438-1

  • Online ISBN: 978-3-642-10439-8

  • eBook Packages: Computer ScienceComputer Science (R0)

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