Skip to main content

Fast Time Delay Neural Networks for Detecting DNA Coding Regions

  • Conference paper
Knowledge-Based and Intelligent Information and Engineering Systems (KES 2009)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 5711))

  • 875 Accesses

Abstract

In this paper, a new approach for fast information detection in DNA sequence has been presented. Our approach uses fast time delay neural networks (FTDNN). The operation of these networks relies on performing cross correlation in the frequency domain between the input data and the input weights of neural networks. It is proved mathematically and practically that the number of computation steps required for the presented FTDNNs is less than that needed by conventional time delay neural networks (CTDNNs). Simulation results using MATLAB confirm the theoretical computations.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. El-Bakry, H.M.: New Faster Normalized Neural Networks for Sub-Matrix Detection using Cross Correlation in the Frequency Domain and Matrix Decomposition. Applied Soft Computing Journal 8(2), 1131–1149 (2008)

    Article  Google Scholar 

  2. El-Bakry, H.M., Zhao, Q.: Fast Pattern Detection Using Normalized Neural Networks and Cross Correlation in the Frequency Domain. EURASIP Journal on Applied Signal Processing, Special Issue on Advances in Intelligent Vision Systems: Methods and Applications—Part I 2005(13), 2054–2060 (2005)

    Article  Google Scholar 

  3. El-Bakry, H.M., Zhao, Q.: A Fast Neural Algorithm for Serial Code Detection in a Stream of Sequential Data. International Journal of Information Technology 2(1), 71–90 (2005)

    Google Scholar 

  4. Hirose, A.: Complex-Valued Neural Networks Theories and Applications. Series on innovative Intelligence, vol. 5 (November 2003)

    Google Scholar 

  5. El-Bakry, H.M.: Face detection using fast neural networks and image decomposition. Neurocomputing Journal 48, 1039–1046 (2002)

    Article  MATH  Google Scholar 

  6. El-Bakry, H.M.: Human Iris Detection Using Fast Cooperative Modular Neural Nets and Image Decomposition. Machine Graphics & Vision Journal (MG&V) 11(4), 498–512 (2002)

    Google Scholar 

  7. El-Bakry, H.M.: Automatic Human Face Recognition Using Modular Neural Networks. Machine Graphics & Vision Journal (MG&V) 10(1), 47–73 (2001)

    Google Scholar 

  8. Jankowski, S., Lozowski, A., Zurada, M.: Complex-valued Multistate Neural Associative Memory. IEEE Trans. on Neural Networks 7, 1491–1496 (1996)

    Article  Google Scholar 

  9. El-Bakry, H.M.: New Fast Principal Component Analysis for Face Detection. Journal of Advanced Computational Intelligence and Intelligent Informatics 11(2), 195–201 (2007)

    Article  Google Scholar 

  10. El-Bakry, H.M., Zhao, Q.: Speeding-up Normalized Neural Networks For Face/Object Detection. Machine Graphics & Vision Journal (MG&V) 14(1), 29–59 (2005)

    Google Scholar 

  11. Cooley, J.W., Tukey, J.W.: An algorithm for the machine calculation of complex Fourier series. Math. Comput. 19, 297–301 (1965)

    Article  MathSciNet  MATH  Google Scholar 

  12. Klette, R., Zamperon: Handbook of image processing operators. John Wiley & Sons Ltd., Chichester (1996)

    Google Scholar 

  13. Snyder, E.E., Stormo, G.D.: Identification of Protein Coding Regions In Genomic DNA. ICCS Transactions (2002)

    Google Scholar 

  14. Audic, S., Claverie, J.-M.: Self-identification of protein-coding regions in microbial genomes. Structural and Genetic Information Laboratory, Centre National de la Recherche Scientifique-EP 91 (2002)

    Google Scholar 

  15. Fickett, J.: Recognition of protein coding regions in DNA sequences. Nucleic Acids Res. 10, 5303–5318 (1982)

    Article  Google Scholar 

  16. Farber, R., Lapedes, A., Sirotkin, K.: Determination of eukaryotic protein coding regions using neural networks and information theory. J. Mol. Biol. 226, 471–479 (1992)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

El-Bakry, H.M., Hamada, M. (2009). Fast Time Delay Neural Networks for Detecting DNA Coding Regions. In: Velásquez, J.D., Ríos, S.A., Howlett, R.J., Jain, L.C. (eds) Knowledge-Based and Intelligent Information and Engineering Systems. KES 2009. Lecture Notes in Computer Science(), vol 5711. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-04595-0_41

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-04595-0_41

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-04594-3

  • Online ISBN: 978-3-642-04595-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics