Skip to main content

An Integrative Bioinformatics Approach for Knowledge Discovery

  • Conference paper
IT Revolutions (IT Revolutions 2008)

Abstract

The vast amount of data being generated by large scale omics projects and the computational approaches developed to deal with this data have the potential to accelerate the advancement of our understanding of the molecular basis of genetic diseases. This better understanding may have profound clinical implications and transform the medical practice; for instance, therapeutic management could be prescribed based on the patient’s genetic profile instead of being based on aggregate data. Current efforts have established the feasibility and utility of integrating and analysing heterogeneous genomic data to identify molecular associations to pathogenesis. However, since these initiatives are data-centric, they either restrict the research community to specific data sets or to a certain application domain, or force researchers to develop their own analysis tools. To fully exploit the potential of omics technologies, robust computational approaches need to be developed and made available to the community. This research addresses such challenge and proposes an integrative approach to facilitate knowledge discovery from diverse datasets and contribute to the advancement of genomic medicine.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Rhodes, D., Kalyana-Sundaram, S., Mahavisno, V., Varambally, R., Yu, J., Briggs, B., Barrette, T., Anstet, M., Kincead-Beal, C., Kulkarni, P., et al.: Oncomine 3.0: Genes, Pathways, and Networks in a Collection of 18,000 Cancer Gene Expression Profiles. Neoplasia 9(2), 166 (2007)

    Article  Google Scholar 

  2. The Cancer Genome Atlas Research Network: Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455(7216), 1061–1068 (2008)

    Google Scholar 

  3. Peña-Castillo, L., Tasan, M., Myers, C., Lee, H., Joshi, T., Zhang, C., Guan, Y., Leone, M., Pagnani, A., Kim, W., et al.: A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biology 9(suppl. 1:S2) (2008)

    Google Scholar 

  4. Wolfson, W.: caBIG: Seeking Cancer Cures by Bits and Bytes. Chemistry & Biology 15(6), 521–522 (2008)

    Article  MathSciNet  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 ICST Institute for Computer Science, Social Informatics and Telecommunications Engineering

About this paper

Cite this paper

Peña-Castillo, L., Phan, S., Famili, F. (2009). An Integrative Bioinformatics Approach for Knowledge Discovery. In: Ulieru, M., Palensky, P., Doursat, R. (eds) IT Revolutions. IT Revolutions 2008. Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, vol 11. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-03978-2_24

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-03978-2_24

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-03977-5

  • Online ISBN: 978-3-642-03978-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics