Abstract
Today, the scale of High performance computing (HPC) systems is much larger than ever. This brings a challenge to fault tolerance of HPC systems. MPI (Message Passing Interface) is one of the most important programming tools for HPC. There are quite a few fault-tolerant extensions for MPI, such as MPICH-V, StarFish, FT-MPI and so on. Most of them are based on on-disk checkpointing. In this paper, we apply two kinds of XOR-based double-erasure codes - RDP (Row-Diagonal Parity) and B-Code to in-memory checkpointing for MPI programs. We develop scalable checkpointing/recovery algorithms which embed erasure code encoding/decoding computation into MPI collective communications operations. The experiments show that the scalable algorithms decrease communication overhead and balance computation effectively. Our approach provides highly reliable, fast in-memory checkpointing for MPI programs.
This paper is supported partly by the National High Technology Research and Development Program of China (2008AA01Z401), RFDP of China (20070055054), and Science and Technology Development Plan of Tianjin (08JCYBJC13000).
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Wang, G., Liu, X., Li, A., Zhang, F. (2009). In-Memory Checkpointing for MPI Programs by XOR-Based Double-Erasure Codes. In: Ropo, M., Westerholm, J., Dongarra, J. (eds) Recent Advances in Parallel Virtual Machine and Message Passing Interface. EuroPVM/MPI 2009. Lecture Notes in Computer Science, vol 5759. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-03770-2_15
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DOI: https://doi.org/10.1007/978-3-642-03770-2_15
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