Skip to main content

Vertebrate 5-Hydroxyisourate Hydrolase Identification, Function, Structure, and Evolutionary Relationship with Transthyretin

  • Chapter
  • First Online:
Recent Advances in Transthyretin Evolution, Structure and Biological Functions

Abstract

5-Hydroxyisourate hydrolase (HIUase) is an enzyme widely distributed in prokaryotic and eukaryotic organisms that catalyzes the hydrolysis of HIU into OHCU in the degradation route from urate to (S)-allantoin. During early vertebrate evolution, a duplication event in the gene encoding HIUase gave rise to the thyroid hormone binding protein transthyretin (TTR). Due to the close evolutionary relationship between HIUase and TTR, these two proteins possess a high degree of amino acid sequence similarity, while performing quite different functions. The 3D structure of zebrafish HIUase compares very well with that of TTR: a highly preserved scaffold harbors distinct functional sites located in the same regions of the two proteins. The residues that are differentially conserved in HIUase as compared to TTR map in catalytic regions occupying the outer portions of the two halves of the central channel that transverses the whole tetrameric proteins. The evolution of HIUase into TTR has been accompanied by remarkable changes of the catalytic sites to give rise to a channel open at both ends, thus allowing free access to hormone molecules.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 189.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 249.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Barker D, Pagel M (2005) Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. PLoS Comput Biol 1:e3

    Article  PubMed  Google Scholar 

  • Cendron L, Berni R, Folli C, Ramazzina I, Percudani R, Zanotti G (2007) The structure of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase provides insights into the mechanism of uric acid degradation. J Biol Chem 282:18182–18189

    Article  CAS  PubMed  Google Scholar 

  • Eneqvist T, Lundberg E, Nilsson L, Abagyan R, Sauer-Eriksson AE (2003) The transthyretin-related protein family. Eur J Biochem 270:518–532

    Article  CAS  PubMed  Google Scholar 

  • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Article  CAS  PubMed  Google Scholar 

  • Folli C, Pasquato N, Ramazzina I, Battistutta R, Zanotti G, Berni R (2003) Distinctive binding and structural properties of piscine transthyretin. FEBS Lett 555:279–284

    Article  CAS  PubMed  Google Scholar 

  • Hedges SB, Chen H, Kumar S, Wang DY, Thompson AS, Watanabe H (2001) A genomic timescale for the origin of eukaryotes. BMC Evol Biol 1:4

    Article  CAS  PubMed  Google Scholar 

  • Hennebry SC, Wright HM, Likic VA, Richardson SJ (2006a) Structural and functional evolution of transthyretin and transthyretin-like proteins. Proteins Struct Funct Bioinfo 64:1024–1045

    Article  CAS  Google Scholar 

  • Hennebry SC, Law RH, Richardson SJ, Buckle AM, Whisstock JC (2006b) The crystal structure of the transthyretin-like protein from Salmonella dublin, a prokaryote 5-hydroxyisourate hydrolase. J Mol Biol 359:1389–1399

    Article  CAS  PubMed  Google Scholar 

  • Hornberg A, Eneqvist T, Olofsson A, Lundgren E, Sauer-Eriksson AE (2000) A comparative analysis of 23 structures of the amyloidogenic protein transthyretin. J Mol Biol 302:649–669

    Article  CAS  PubMed  Google Scholar 

  • Hurst LD, Pal C, Lercher MJ (2004) The evolutionary dynamics of eukaryotic gene order. Nat Rev Genet 5:299–310

    Article  CAS  PubMed  Google Scholar 

  • Irving JA, Pike RN, Lesk AM, Whisstock JC (2000) Phylogeny of the serpin superfamily: implications of patterns of amino acid conservation for structure and function. Genome Res 10:1845–1864

    Article  CAS  PubMed  Google Scholar 

  • Jacob J, Vanholme B, Haegeman A, Gheysen G (2007) Four transthyretin-like genes of the migratory plant-parasitic nematode Radopholus similis: members of an extensive nematode-specific family. Gene 402:9–19

    Article  CAS  PubMed  Google Scholar 

  • Jung DK, Lee Y, Park SG, Park BC, Kim GH, Rhee S (2006) Structural and functional analysis of PucM, a hydrolase in the ureide pathway and a member of the transthyretin-related protein family. Proc Natl Acad Sci USA 103:9790–9795

    Article  CAS  PubMed  Google Scholar 

  • Kahn K, Serfozo P, Tipton PA (1997) Identification of the true product of the urate oxidase reaction. J Am Chem Soc 5435–5442

    Google Scholar 

  • Kim K, Park J, Rhee S (2007) Structural and functional basis for (S)-allantoin formation in the ureide pathway. J Biol Chem 282:23457–23464

    Article  CAS  PubMed  Google Scholar 

  • Laskowski RA, Macarthur MW, Moss DS, Thornton JM (1993) Procheck – a program to check the stereochemical quality of protein structures. J Appl Cryst 26:283–291

    Article  CAS  Google Scholar 

  • Lee Y, Lee DH, Kho CW, Lee AY, Jang M, Cho S, Lee CH, Lee JS, Myung PK, Park BC, Park SG (2005) Transthyretin-related proteins function to facilitate the hydrolysis of 5-hydroxyisourate, the end product of the uricase reaction. FEBS Lett 579:4769–4774

    Article  CAS  PubMed  Google Scholar 

  • Lundberg E, Backstrom S, Sauer UH, Sauer-Eriksson AE (2006) The transthyretin-related protein: structural investigation of a novel protein family. J Struct Biol 155:445–457

    Article  CAS  PubMed  Google Scholar 

  • Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D (1999) Detecting protein function and protein–protein interactions from genome sequences. Science 285:751–753

    Article  CAS  PubMed  Google Scholar 

  • Mulkidjanian AY, Koonin EV, Makarova KS, Mekhedov SL, Sorokin A, Wolf YI, Dufresne A, Partensky F, Burd H, Kaznadzey D, Haselkorn R, Galperin MY (2006) The cyanobacterial genome core and the origin of photosynthesis. Proc Natl Acad Sci USA 103:13126–13131

    Article  CAS  PubMed  Google Scholar 

  • Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO (1999) Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Natl Acad Sci USA 96:4285–4288

    Article  CAS  PubMed  Google Scholar 

  • Prapunpoj P, Yamauchi K, Nishiyama N, Richardson SJ, Schreiber G (2000) Evolution of structure, ontogeny of gene expression, and function of Xenopus laevis transthyretin. Am J Physiol Regul Integr Comp Physiol 279:R2026–R2041

    CAS  PubMed  Google Scholar 

  • Ramazzina I, Cendron L, Folli C, Berni R, Monteverdi D, Zanotti G, Percudani R (2008) Logical identification of an allantoinase analog (puuE) recruited from polysaccharide deacetylases. J Biol Chem 283:23295–23304

    Article  CAS  PubMed  Google Scholar 

  • Ramazzina I, Folli C, Secchi A, Berni R, Percudani R (2006) Completing the uric acid degradation pathway through phylogenetic comparison of whole genomes. Nat Chem Biol 2:144–148

    Article  CAS  PubMed  Google Scholar 

  • Raychaudhuri A, Tipton PA (2002) Cloning and expression of the gene for soybean hydroxyisourate hydrolase. Localization and implications for function and mechanism. Plant Physiol 130:2061–2068

    CAS  Google Scholar 

  • Sarma AD, Serfozo P, Kahn K, Tipton PA (1999) Identification and purification of hydroxyisourate hydrolase, a novel ureide-metabolizing enzyme. J Biol Chem 274:33863–33865

    Article  CAS  PubMed  Google Scholar 

  • Saverwyns H, Visser A, Van Durme J, Power D, Morgado I, Kennedy MW, Knox DP, Schymkowitz J, Rousseau F, Gevaert K, Vercruysse J, Claerebout E, Geldhof P (2008) Analysis of the transthyretin-like (TTL) gene family in Ostertagia ostertagi – comparison with other strongylid nematodes and Caenorhabditis elegans. Int J Parasitol. doi 10.1016/j.ijpara.2008.04.004

    Google Scholar 

  • Snel B, Bork P, Huynen MA (2002) The identification of functional modules from the genomic association of genes. Proc Natl Acad Sci USA 99:5890–5895

    Article  CAS  PubMed  Google Scholar 

  • Todd AE, Orengo CA, Thornton JM (2002) Sequence and structural differences between enzyme and nonenzyme homologs. Structure 10:1435–1451

    Article  CAS  PubMed  Google Scholar 

  • Todd AE, Orengo CA, Thornton JM (2001) Evolution of function in protein superfamilies, from a structural perspective. J Mol Biol 307:1113–1143

    Article  CAS  PubMed  Google Scholar 

  • Trooskens G, De Beule D, Decouttere F, Van Criekinge W (2005) Phylogenetic trees: visualizing, customizing and detecting incongruence. Bioinformatics 21:3801–3802

    Article  CAS  PubMed  Google Scholar 

  • Wojtczak A, Cody V, Luft JR, Pangborn W (2001) Structure of rat transthyretin (rTTR) complex with thyroxine at 2.5 A resolution: first non-biased insight into thyroxine binding reveals different hormone orientation in two binding sites. Acta Crystallogr D Biol Crystallogr 57:1061–1070

    Article  CAS  PubMed  Google Scholar 

  • Zanotti G, Cendron L, Ramazzina I, Folli C, Percudani R, Berni R (2006) Structure of zebra fish HIUase: insights into evolution of an enzyme to a hormone transporter. J Mol Biol 363:1–9

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Giuseppe Zanotti .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Zanotti, G., Ramazzina, I., Cendron, L., Folli, C., Percudani, R., Berni, R. (2009). Vertebrate 5-Hydroxyisourate Hydrolase Identification, Function, Structure, and Evolutionary Relationship with Transthyretin. In: Richardson, S.J., Cody, V. (eds) Recent Advances in Transthyretin Evolution, Structure and Biological Functions. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-00646-3_6

Download citation

Publish with us

Policies and ethics