Abstract
Large-scale collaboration is a key success factor in today scientific experiments, usually involving a variety of digital resources, while Cooperative Information Systems (CISs) represent a feasible solution for sharing distributed information sources and activities. On this premise, the aim of this paper is to provide a paradigm for modeling scientific experiments as distributed processes that a group of scientists may go through on a network of cooperative e-nodes interacting with one another in order to offer or to ask for services. By discussing a bioinformatics case study, the paper details how the problem solving strategy related to a scientific experiment can be expressed by a workflow of single cooperating activities whose implementation is carried out on a prototypical service-based scientific environment.
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Meersman, R., Tari, Z. (eds.): Proceedings of the 15th International Conference on Cooperative Information Systems, Vilamoura, Portugal, November 28-30 (2007)
Bosin, A., Dessì, N., Fugini, M.G., Liberati, D., Pes, B.: Applying Enterprise Models to Design Cooperative Scientific Environments. In: Bussler, C.J., Haller, A. (eds.) BPM 2005. LNCS, vol. 3812, pp. 281–292. Springer, Heidelberg (2006)
Berman, F., Fox, G., Hey, T. (eds.): Grid Computing: Making the Global Infrastructure a Reality. John Wiley and Sons, Inc., New York (2003)
De Roure, D., Gil, Y., Hendler, J.A. (eds.): IEEE Intelligent Systems, Special Issue on E-Science, vol. 19(1) (2004)
Alonso, G., Casati, F., Kuno, H., Machiraju, V.: Web services - Concepts, architectures, and applications. Springer, Heidelberg (2004)
Pollock, J.T., Hodgson, R.: Adaptive Information: Improving Business Through Semantic Interoperability, Grid Computing, and Enterprise Integration. Wiley Series in Systems Engineering and Management. Wiley-Interscience, Chichester (2004)
Travica, B.: Virtual organization and electronic commerce. ACM SIGMIS Database 36(3) (2005)
Singh, M., Huhns, M.: Service-oriented computing: Semantics, processes, agents. Wiley, Chichester (2005)
Hardimann, G.: Microarray methods and applications: Nuts & bolts. DNA Press (2003)
Bosin, A., Dessì, N., Liberati, D., Pes, B.: Learning Bayesian Classifiers from Gene-Expression MicroArray Data. In: Bloch, I., Petrosino, A., Tettamanzi, A.G.B. (eds.) WILF 2005. LNCS (LNAI), vol. 3849, pp. 297–304. Springer, Heidelberg (2006)
Bosin, A., Dessì, N., Pes, B.: High-Dimensional Micro-array Data Classification using Minimum Description Length and Domain Expert Knowledge. In: Ali, M., Dapoigny, R. (eds.) IEA/AIE 2006. LNCS (LNAI), vol. 4031, pp. 790–799. Springer, Heidelberg (2006)
Bosin, A., Dessì, N., Pes, B.: Capturing Heuristics and Intelligent Methods for Improving Micro-Array Data Classification. In: Yin, H., Tino, P., Corchado, E., Byrne, W., Yao, X. (eds.) IDEAL 2007. LNCS, vol. 4881, pp. 790–799. Springer, Heidelberg (2007)
Armstrong, E., et al.: The J2EE 1.4 Tutorial (2004)
Oracle database 10g enterprise edition, http://www.oracle.com
Oinn, T.: Xscufl Language Reference, European Bioinformatics Institute (2004), http://www.ebi.ac.uk/~tmo/mygrid/XScuflSpecification.html
Golub, T.R., et al.: Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring. Science 286, 531–537 (1999)
Yeoh, E.J., et al.: Classification, subtype discovery, and prediction outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 1 (2002)
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Bosin, A., Dessì, N., Fugini, M., Pes, B. (2008). Cooperative E-Organizations for Distributed Bioinformatics Experiments. In: Fyfe, C., Kim, D., Lee, SY., Yin, H. (eds) Intelligent Data Engineering and Automated Learning – IDEAL 2008. IDEAL 2008. Lecture Notes in Computer Science, vol 5326. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-88906-9_39
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DOI: https://doi.org/10.1007/978-3-540-88906-9_39
Publisher Name: Springer, Berlin, Heidelberg
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