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A Practical Evaluation of BioProvider

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Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 5167))

Abstract

We present here an instantiation of BioProvider, a tool that efficiently provides data for biological applications, tailored to the way BLAST demands data. We briefly discuss some of the factors that may influence data availability and performances.

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References

  1. Lemos, M., Lifschitz, S.: A Study of a Multi-Ring Buffer Management for BLAST. In: 1st IEEE International Workshop on Biological Data Management (BIDM), pp. 5–9 (2003)

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  2. Mauro, R.C., Lifschitz, S.: An I/O Device Driver for Bioinformatics Tools: the case for BLAST. Genetics and Molecular Research (GMR) 4(3), 563–570 (2005)

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  3. NCBI BLAST, http://www.ncbi.nlm.nih.gov/BLAST/

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  5. Smith, T.F., Waterman, M.S.: Identification of Common Molecular Subsequence. Journal of Molecular Biology 147, 195–197 (1981)

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  6. WU-BLAST, http://blast.wustl.edu

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Ana L. C. Bazzan Mark Craven Natália F. Martins

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© 2008 Springer-Verlag Berlin Heidelberg

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de Noronha, M.F., Lifschitz, S., de Miranda, A.B. (2008). A Practical Evaluation of BioProvider. In: Bazzan, A.L.C., Craven, M., Martins, N.F. (eds) Advances in Bioinformatics and Computational Biology. BSB 2008. Lecture Notes in Computer Science(), vol 5167. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-85557-6_18

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  • DOI: https://doi.org/10.1007/978-3-540-85557-6_18

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-85556-9

  • Online ISBN: 978-3-540-85557-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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