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Automatic Subcortical Structure Segmentation Using Probabilistic Atlas

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Advances in Visual Computing (ISVC 2007)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 4841))

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Abstract

Automatic segmentation of sub-cortical structures has great use in studying various neurodegentative diseases. In this paper, we propose a fully automatic solution to this problem through the utilization of a distribution atlas built from a set of training MR images. Our model consists of two major components: a local likelihood based active contour (LLAC) model and a guiding probabilistic atlas. The former has a very strong ability in standing out the structures that are in low contrast with the surrounding tissues. The latter has the functionality of defining and leading the segmentation procedure to capture the structure of interest. Formulated under the maximum a posterior framework, probabilistic atlas for the structure of interest, e.g. caudate, putamen, can be seamlessly integrated into the level set evolution procedure, and no thresholding step is needed for capturing the target.

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References

  1. Chan, T.F., Vese, L.A.: Active contours without edges. IEEE Trans. on Image Processing 10(2), 266–277 (2001)

    Article  MATH  Google Scholar 

  2. Chan, T.F., Vese, L.A.: A level set algorithm for minimizing the Mumford-Shah functional in image processing. In: 1st IEEE Workshop on Variational and Level Set Methods in Computer Vision, pp. 161–168 (2001)

    Google Scholar 

  3. Cocosco, C.A., et al.: BrainWeb: Online interface to a 3D MRI simulated brain database, Neuroimage, 5(4), (part 2/4 S245) (1997)

    Google Scholar 

  4. Cremers, D., Rousson, M., Deriche, R.: A review of statistical approaches to level set segmentation: integrating color, texture, motion and shape. IJCV (to appear, 2006)

    Google Scholar 

  5. Yang, J., Tagare, H., Staib, L.H., Duncan, J.S.: Segmentation of 3D Deformable Objects with Level Set Based Prior Models. ISBI, 85–88 (2004)

    Google Scholar 

  6. Evans, A.C., Collins, D.L., Milner, B.: An MRI-based stereotactic atlas from 250 young normal subjects. Society of Neuroscience Abstrasts 18, 408 (1992)

    Google Scholar 

  7. Zhang, Y., Brady, M., Smith, S.: Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm. IEEE Trans. on Medical Imaging 20(1), 45–57 (2001)

    Article  Google Scholar 

  8. Fischel, B., et al.: Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain. Neuron 33, 341–355 (2002)

    Article  Google Scholar 

  9. Leventon, M., Grimson, W., Faugeras, O.: Statistical shape influence in geodesic active contours. CVPR 2000 1, 316–323 (2000)

    Google Scholar 

  10. Liu, J., Chelberg, D., Smith, C., Chebrolu, H.: Distribution-based Level Set Model for Medical Image Segmentation. In: BMVC 2007. British Machine Vision Conference, Warwick, UK, 10-13 September (2007)

    Google Scholar 

  11. Pohl, K., Bouix, S., Kikinis, R., Grimson, W.: Anatomical guided segmentation with non-stationary tissue class distributions in an expectation-maximization framework. In: ISBI 2004, pp. 81–84 (2004)

    Google Scholar 

  12. Paragios, N., Deriche, R.: Coupled Geodesic Active Regions for Image Segmentation: A Level Set Approach. In: Vernon, D. (ed.) ECCV 2000. LNCS, vol. 1843, pp. 224–240. Springer, Heidelberg (2000)

    Chapter  Google Scholar 

  13. Rousson, M., Deriche, R.: A Variational Framework for Active and Adaptative Segmentation of Vector Valued Images, INRIA Technical Report (2002)

    Google Scholar 

  14. Sonka, M., Fitzpatrick, J.M.: Handbook of medical imaging, vol. 1,2, pp. 69–211. SPIE Press (2000)

    Google Scholar 

  15. Mechelli, A., Price, C.J., Friston, K.J., Ashburner, J.: Voxel-Based Morphometry of the Human Brain: Methods and Applications. In: Current Medical Imaging Reviews, pp. 105–113 (2005)

    Google Scholar 

  16. Gouttard, S., Styner, M., Joshi, S., Smith, R.G., Cody, H., Gerig, G.: Subcortical Structure Segmentation using probabilistic Atlas Priors. In: SPIE 2007, vol. 6512, p. 65122J (2007)

    Google Scholar 

  17. Tsai, A., Yezzi, A., Wells, W., Tempany, C., Tucker, D., Fan, A., Grimson, E., Willsky, A.: A Shape-Based Approach to Curve Evolution for Segmentation of Medical Imagery. IEEE TMI 22(2), 137–154 (2003)

    Google Scholar 

  18. Tsai, A., Yezzi, A., Willsky, A.: A Curve Evolution Approach to Smoothing and Segmentation Using the Mumford-Shah Functional. In: IEEE Conference on Computer Vision and Pattern Recognition (June 2000)

    Google Scholar 

  19. Zhou, J., Rajapakse, J.C.: Segmentation of subcortical brain structures using fuzzy templates. NeuroImage 28, 915–924 (2005)

    Article  Google Scholar 

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George Bebis Richard Boyle Bahram Parvin Darko Koracin Nikos Paragios Syeda-Mahmood Tanveer Tao Ju Zicheng Liu Sabine Coquillart Carolina Cruz-Neira Torsten Müller Tom Malzbender

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© 2007 Springer-Verlag Berlin Heidelberg

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Liu, J., Chelberg, D., Smith, C., Chebrolu, H. (2007). Automatic Subcortical Structure Segmentation Using Probabilistic Atlas. In: Bebis, G., et al. Advances in Visual Computing. ISVC 2007. Lecture Notes in Computer Science, vol 4841. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-76858-6_17

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  • DOI: https://doi.org/10.1007/978-3-540-76858-6_17

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-76857-9

  • Online ISBN: 978-3-540-76858-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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