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Investigating the Emergence of Phenotypic Plasticity inĀ Evolving Digital Organisms

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Advances in Artificial Life (ECAL 2007)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 4648))

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Abstract

In the natural world, individual organisms can adapt as their environment changes. In most in silico evolution, however, individual organisms tend to consist of rigid solutions, with all adaptation occurring at the population level. If we are to use artificial evolving systems as a tool in understanding biology or in engineering robust and intelligent systems, however, they should be able to generate solutions with fitness-enhancing phenotypic plasticity. Here we use Avida, an established digital evolution system, to investigate the selective pressures that produce phenotypic plasticity. We witness two different types of fitness-enhancing plasticity evolve: static-execution-flow plasticity, in which the same sequence of actions produces different results depending on the environment, and dynamic-execution-flow plasticity, where organisms choose their actions based on their environment. We demonstrate that the type of plasticity that evolves depends on the environmental challenge the population faces. Finally, we compare our results to similar ones found in vastly different systems, which suggest that this phenomenon is a general feature of evolution.

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References

  1. Holland, J.J.: Adaptation in Natural and Artificial Systems. University of Michigan Press, Ann Arbor (1975)

    Google ScholarĀ 

  2. Koza, J., Keane, M., Streeter, M., Mydlowec, W., Yu, J., Lanza, G.: Genetic Programming: Routine Human-Competitive Machine Intelligence. Kluwer, New York (2003)

    MATHĀ  Google ScholarĀ 

  3. Stanley, K.O., Bryant, B.D., Miikkulainen, R.: Evolving Adaptive Neural Networks with and without Adaptive Synapses. In: IEEE Congress on Evolutionary Computation, Canberra, Australia, IEEE Press, Los Alamitos (2003)

    Google ScholarĀ 

  4. Nolfi, S., Floreano, D.: Learning and Evolution. Autonomous RobotsĀ 7, 89ā€“113 (2004)

    ArticleĀ  Google ScholarĀ 

  5. Ackely, D.E., Littman, M.L.: Interactions between Learning and Evolution. In: Proceedings of the Second Conference on Artificial Life, Addison-Wesley, Reading (1991)

    Google ScholarĀ 

  6. Belew, R.K., McInerney, J., Schraudolph, N.N.: Evolving Networks: Using the Genetic Algorithm with Connectionist Learning. CSE Technical Report CS89-174. University of California, San Diego (1990)

    Google ScholarĀ 

  7. Whiteson, S., Stone, P.: Evolutionary Function Approximation for Reinforcement Learning. Journal of Machine Learning Research, 877-917 (2006)

    Google ScholarĀ 

  8. Nolfi, S.: Learning and Evolution in Neural Networks. Adaptive BehaviorĀ 3, 5ā€“28 (1994)

    ArticleĀ  Google ScholarĀ 

  9. Baldwin, J.M.: A New Factor in Evolution. American Naturalist, 441-451 (1896)

    Google ScholarĀ 

  10. Hinton, G.E., Nowlan, S.J.: How Learning Can Guide Evolution. Complex Systems, 495-502 (1987)

    Google ScholarĀ 

  11. Nolfi, S., Miglino, O., Parisi, D.: Phenotypic Plasticity in Evolving Neural Networks, 146-157 (1994)

    Google ScholarĀ 

  12. Ofria, C., Wilke, C.O.: Avida: A Software Platform for Research in Computational Evolutionary Biology. Artificial LifeĀ 10, 191ā€“229 (2004)

    ArticleĀ  Google ScholarĀ 

  13. Lenski, R.E., Ofria, C., Collier, T.C., Adami, C.: Genome Complexity, Robustness and Genetic Interactions in Digital Organisms. NatureĀ 400, 661ā€“664 (1999)

    ArticleĀ  Google ScholarĀ 

  14. Ofria, C., Adami, C., Collier, T.C.: Design of Evolvable Computer Languages. IEEE Transactions on Evolutionary Computation, 420-424 (2002)

    Google ScholarĀ 

  15. Misevic, D., Ofria, C., Lenski, R.E.: Sexual Reproduction Reshapes the Genetic Architecture of Digital Organisms. Proceedings of the Royal Society London, Series BĀ 273, 457ā€“464 (2006)

    ArticleĀ  Google ScholarĀ 

  16. Adami, C., Ofria, C., Collier, T.C.: Evolution of Biological Complexity. Proceedings of the National Academy of SciencesĀ 97, 4463ā€“4468 (2000)

    ArticleĀ  Google ScholarĀ 

  17. Goings, S., Clune, J., Ofria, C., Pennock, R.T.: Kin-Selection: The Rise and Fall of Kin-Cheaters. In: Proceedings of Artificial Life Nine, pp. 303ā€“308 (2004)

    Google ScholarĀ 

  18. Lenski, R.E., Ofria, C., Pennock, R.T., Adami, C.: The Evolutionary Origin of Complex Features. NatureĀ 423, 139ā€“144 (2003)

    ArticleĀ  Google ScholarĀ 

  19. Darwin, C.: On the Various Contrivances by Which British and Foreign Orchids Are Fertilized by Insects. Murray, London (1862)

    Google ScholarĀ 

  20. Dawkins, R.: The Selfish Gene. Oxford University Press, Oxford (1976)

    Google ScholarĀ 

  21. Dawkins, R.: The Blind Watchmaker. Penguin, London (1986)

    Google ScholarĀ 

  22. Gould, S.J.: The Pandaā€™s Thumb: More Reflections in Natural History. Norton, New York (1980)

    Google ScholarĀ 

  23. Gould, S.J., Lewontin, R.C.: The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme. Proceedings of the Royal Society of LondonĀ 205, 281ā€“288 (1979)

    ArticleĀ  Google ScholarĀ 

  24. Jacob, F.: Evolution and Tinkering. Science, 1161-1166 (1977)

    Google ScholarĀ 

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Fernando Almeida e Costa Luis Mateus Rocha Ernesto Costa Inman Harvey AntĆ³nio Coutinho

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Ā© 2007 Springer-Verlag Berlin Heidelberg

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Clune, J., Ofria, C., Pennock, R.T. (2007). Investigating the Emergence of Phenotypic Plasticity inĀ Evolving Digital Organisms. In: Almeida e Costa, F., Rocha, L.M., Costa, E., Harvey, I., Coutinho, A. (eds) Advances in Artificial Life. ECAL 2007. Lecture Notes in Computer Science(), vol 4648. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-74913-4_8

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  • DOI: https://doi.org/10.1007/978-3-540-74913-4_8

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-74912-7

  • Online ISBN: 978-3-540-74913-4

  • eBook Packages: Computer ScienceComputer Science (R0)

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