One of the central issues of evolutionary biology is the origin of the species, although the definition of species is an endlessly debated issue (Coyne and Orr 2004). According to the biological species concept (BSC), a species is a group of an actually or potentially interbreeding natural population, which is reproductively isolated from other such groups (Mayr 1942). No concept of speciation could be complete without a genetic interpretation of the rise of isolating mechanisms. Fitness reduction can range from maladaptation to inviability or sterility. The loci that underlie such reduction in fitness might be considered ‘speciation genes’, which are important in driving the nascent species to become independent genetic entities (Wu and Ting 2004). Therefore, we can analyze the genetic basis of speciation as a more tractable problem by focusing on the genetic basis for reproductive isolation. Recent work on reproductive isolation in Drosophila has advanced our understanding of many fundamental questions about speciation (see review in Coyne and Orr 2004). The BSC can be favorably adopted regarding domesticated plants, and the concept of gene pools based on the degree of their sexual affinities is useful for their classification (Harlan 1975). Any good species are by no means completely isolated. Wild and cultivated complexes in crops are taxonomically distinct but phylogenetically conspecific. Their genetic differentiation is maintained through disruptive selection associated with habitat adaptation, indicating that domestication proceeds at the intra-specific level under human influence.
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References
Browning H, Strome S (1996) A sperm-supplied factor required for embryogenesis in C. elegans. Development 122:391–404
Cameron DR, Moav R (1957) Inheritance in Nicotiana tabacum XXVII. Pollen killer, an alien genetic locus inducing abortion of microspores not carrying it. Genetics 42:326–335
Carson HL (1975) The genetics of speciation at the diploid level. Am Nat 109:83–92
Chu YE, Morishima H, Oka HI (1969) Reproductive barriers distributed in cultivated rice species and their wild relatives. Jpn J Genet 44:207–223
Comai L, Tyagi AP, Winter K, et al. (2000) Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids. Plant Cell 12:1551–1568
Coyne JA, Orr HA (2004) Speciation. Sinauer Associates, Sunderland, Massachusetts
Dobzhansky T (1970) Genetics of the evolutionary process. Columbia University Press New York
Doebley J, Stec A, Hubbard L (1997) The evolution of apical dominance in maize. Nature 386:485–488
Endo TR, Tsunewaki K (1975) Sterility of common wheat with Aegilops triuncialis cytoplasm. J Hered 66:13–18
Evans MMS, Kermicle JL (2001) Teosinte crossing barrier1, a locus governing hybridization of teosinte with maize. Theor Appl Genet 103:259–265
Fishman L, Willis JH (2005) A novel meiotic drive locus almost completely distorts segregation in Mimulus (monkeyflower) hybrids. Genetics 169:347–353
Frank S (1991) Divergence of meiotic drive-suppression system as an explanation for sex-biased hybrid sterility and inviability. Evolution 45:262–267
Fukuoka S, Namai H, Okuno K (1998) RFLP mapping of the genes controlling hybrid breakdown in rice (Oryza sativa L.). Theor Appl Genet 97:446–449
Fukushima Y, Konishi T (1994) Genetic studies on hybrid sterility in barley. Jpn J Genet 69:719–726
Garris AJ, Tai TH, Coburn J, Kresovich S, McCouch S (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169:1631–1638
Grant V (1981) Plant speciation, 2nd edn. Columbia University Press, New York
Grossniklaus U, Vielle-Calzada JP, Hoeppner MA, Gagliano WB (1998) Maternal control of embryogenesis by MEDEA, a polycomb group gene in Arabidopsis. Science 280:446–450
Harlan JR (1975) Crop and man. American Society of Agronomy, Madison, Wisconsin
Harushima Y, Nakagahra M, Yano M, Sasaki T, Kurata N (2001) A genome-wide survey of reproductive barriers in an intraspecific hybrid. Genetics 159:883–892
Hollingshead L (1930) A lethal factor in Crepis effective only in an interspecific hybrid. Genetics 15:114–140
Hurst GDD, Werren JH (2001) The role of selfish genetic elements in eukaryotic evolution. Nat Rev Genet 2:597–606
Hurst LD, Pomiankowski A (1991) Causes of sex ratio bias may account for unisexual sterility in hybrid: a new explanation of Haldane’s rule and related phenomena. Genetics 128:841–858
Ikehashi H, Araki H (1986) Genetics of F1 sterility in remote crosses of rice. In: International Rice Research Institute (ed) Rice genetics. IRRI, Los Baños
Ji Q, Lu J, Chao Q, Gu M, Xu M (2005) Delimiting a rice wide-compatibility gene S5 n to a 50 kb region. Theor Appl Genet 111:1495–1503
Johnston SA, den Nijs TPM, Peloquin SJ, Hanneman RE (1980) The significance of genic balance to endosperm development in interspecific crosses. Theor Appl Genet 57:5–9
Kato S, Kosaka H, Hara S (1928) On the affinity of rice varieties as shown by fertility of hybrid plants. Bull Sci Fac Agric Kyushu Univ 3:132–147
Kinoshita T, Yadegari R, Harada JJ, Goldberg RB, Fischer RL (1999) Imprinting of the MEDEA polycomb gene in the Arabidopsis endosperm. Plant Cell 11:1945–1952
Kubo T, Yoshimura A (2005) Epistasis underlying female sterility detected in hybrid breakdown in a japonica–indica cross on rice (Oryza sativa L.). Theor Appl Genet 110:346–355
Li Z, Zho Y (1986) Rice male-sterile cytoplasm and fertility-restoration. In: International Rice Research Institute (ed) Hybrid rice. IRRI, Manila, pp 85–102
Li Z, Pinson SRM, Paterson AH, Park WD, Stansel JW (1997) Genetics of hybrid sterility and hybrid breakdown in an intersubspecific rice (Oryza sativa L.) population. Genetics 145:1139–1148
Lin BY (1984) Ploidy barrier to endosperm development in maize. Genetics 107:103–115
Loegering WQ, Sears ER (1963) Distorted inheritance of stem-rust resistance of Timstein wheat caused by a pollen-killing gene. Can J Genet 5:65–72
Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290:1151–1155
Maguire MP (1963) High transmission frequency of a Tripsacum chromosome in corn. Genetics 48:1185–1194
Masly JP, Jones CD, Noor MAF, Locke J, Orr HA (2006) Gene transposition as a cause of hybrid sterility in Drosophila. Science 313:1448–1450
Matsubara K, Khin-Thidar, Sano Y (2003) A gene block causing cross-incompatibility hidden in wild and cultivated rice. Genetics 165:343–352
Mayr E (1942) Systematics and the origin of species. Columbia University Press, New York
McClintock B (1984) The significance of responses of the genome to challenge. Science 226:792–801
Morishima H (1969) Phenetic similarity and phylogenetic relationships among strains of Oryza perennis, estimated by methods of numerical taxonomy. Evolution 23:429–443
Morishima H, Sano Y, Oka HI (1992) Evolutionary studies in cultivated rice and its wild relatives. Oxford Surv Evol Biol 8:135–184
Mulcahy DL (1979) The rise of the angiosperms: a genecological factor. Science 206:20–23
Nakagahra M (1972) Genetic mechanism on the distorted segregation of marker genes belonging to the eleventh linkage group in cultivated rice. Jpn J Breed 22:232–238
Nei M, Maruyama T, Wu CI (1983) Models of evolution of reproductive isolation. Genetics 103:557–579
Nishiyama I, Yabuno T (1979) Triple fusion of the primary endosperm nucleus, a cause of interspecific cross-incompatibility in Avena. Euphytica 28:57–65
Oka HI (1974) Analysis of genes controlling F1 sterility in rice by the use of isogenic lines. Genetics 77:521–534
Oka HI (1988) Origin of cultivated rice. Elsevier, Tokyo
Qiu SQ, Liu K, Jiang JX, et al. (2005) Delimitation of the rice wide compatibility gene S5 n to a 40-kb DNA fragment. Theor Appl Genet 111:1080–1086
Ramsey J, Bradshaw HD, Schemske DW (2003) Components of reproductive isolation between the monkeyflowers Mimulus lewisii and M. cardinalis (Scrophulariaceae). Evolution 57:1520–1534
Ren ZL, Lelley T (1990) Chromosomal localization of genes in the R genome causing hybrid necrosis in rye and triticale. Genome 33:40–43
Rick CM (1966) Abortion of male and female gametes in the tomato determined by allelic interaction. Genetics 53:85–96
Rick CM (1971) The tomato Ge locus: linkage relations and geographic distribution of alleles. Genetics 67:75–85
Sandler L, Novitski E (1957) Meiotic drive as an evolutionary force. Am Nat 91:105–110
Sano Y (1983) A new gene controlling sterility in F1 hybrids of two cultivated rice species. J Hered 74:435–439
Sano Y, Chu YE, Oka HI (1979) Genetic studies of speciation in cultivated rice, I. Genic analysis for the F1 sterility between O. sativa L. and O. glaberrima Steud. Jpn J Genet 54:121–132
Scoles GJ, Kibirge-Sebunya IN (1983) Preferential abortion of gametes in wheat induced by an Agropyron chromosome. Can J Cytol 25:1–6
Scott RJ, Spielman M, Bailey J, Dickinson HG (1998) Parent-of-origin effect on seed development in Arabidopsis thalina. Development 125:3329–3341
Shinjo C (1984) Cytoplasmic male sterility and fertility restoration in rice having genome A. In: Tsunoda S, Takahashi N (eds) Biology of rice. Elsevier, Amsterdam, pp 321–338
Snape JW, Bennett MD, Simpson E (1980) Post-pollination events in crosses of hexaploid wheat with tetraploid Hordeum bulbosum. Z Pflanzenzüchtg 85:200–204
Stephens SG (1946) The genetics of “corky” I. The New World alleles and their possible role as an interspecific isolating mechanism. J Genet 47:150–161
Sweigart AL, Fishman L, Willis JH (2006) A simple genetic incompatibility causes hybrid male sterility in Mimulus. Genetics 172:2465–2479
Taketa S, Choda M, Ohashi R, Ichii M, Takeda K (2002) Molecular and physical mapping of a barley gene on chromosome arm 1HL that causes sterility in hybrids with wheat. Genome 45:617–625
Taylor DR, Ingvarsson PK (2003) Common features of segregation distortion in plants and animals. Genetica 117:27–35
Tezuka T, Marubashi W (2006) Hybrid lethality in interspecific hybrids between Nicotiana tabacum and N. suaveolens: evidence that the Q chromosome causes hybrid lethality based on Q-chromosome-specific DNA markers. Theor Appl Genet 112:1172–1178
Tomar SMS, Singh B (1998) Hybrid chlorosis in wheat × rye crosses. Euphytica 99:1–4
Tsujimoto H, Tsunewaki K (1985) Gametocidal genes in wheat and its relatives. II. Suppressor of chromosome 3C gametocidal gene of Aegilops triuncialis. Can J Genet Cytol 27:178–185
Tsunewaki K (1960) Monosomic and conventional gene analysis in common wheat. III. Lethality. Jpn J Genet 35:71–75
Tsunewaki K (1966) Gene analysis on chlorosis of the hybrid, Triticum aestivum var. Chinese Spring × T. macha var. Subletschchumicum, and its bearing on the genetic basis of necrosis and chrolosis. Jpn J Genet 41:413–426
Tsunewaki K (1992) Aneuploid analysis of hybrid necrosis and hybrid chlorosis in tetraploid wheats using the D genome chromosome substitution lines of durum wheat. Genome 35:594–601
Virmani SS, Shinjo C (1988) Current status of analysis and symbols for male-sterile cytoplasms and fertility-restoring genes. Rice Genet Newsl 5:9–15
Walbot V, Evans MS (2003) Unique features of the plant life cycle and their consequences. Nat Rev Genet 4:369–379
Wang C, Zhu C, Zhai H, Wan J (2005) Mapping segregation distortion loci and quantitative trait loci for spikelet sterility in rice (Oryza sativa L.). Genet Res 86:97–106
Wang GW, He YQ, Xu CG, Zhang Q (2006) Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.). Theor Appl Genet 112:382–387
Wang J, Liu KD, Xu CG, Li XH, Zhang Q (1998) The high level of wide-compatibility of variety ‘Dular’ has a complex genetic basis. Theor Appl Genet 97:407–412
Wu CI (2001) The genic view of the process of speciation. J Evol Biol 14:851–864
Wu CI, Ting CT (2004) Genes and speciation. Nat Rev Genet 5:247–257
Xu Y, Zhu L, Xiao J, Huang N, McCouch SR (1997) Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet 253:535–545
Yi B, Chen Y, Lei S, Tu J, Fu T (2006) Fine mapping of the recessive genic male-sterile gene (Bnms1) in Brassica napus L. Theor Appl Genet 113:643–650
Zhu S, Jiang L, Wang C, Zhai H, Li D, Wan J (2005) The origin of weedy rice Ludao in China deduced by genome wide analysis of its hybrid sterility genes. Breed Sci 55:409–414
Zhu SS, Wang CM, Zheng TQ, Zhao ZG, Wan JM, Ikehashi H (2004) A novel gene causing hybrid sterility in a remote cross of rice (Oryza sativa L.). Rice Genet Newsl 21:44–45
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Koide, Y., Onishi, K., Kanazawa, A., Sano, Y. (2008). Genetics of Speciation in Rice. In: Hirano, HY., Sano, Y., Hirai, A., Sasaki, T. (eds) Rice Biology in the Genomics Era. Biotechnology in Agriculture and Forestry, vol 62. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-74250-0_19
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