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Haplotyping

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12.4 Bibliographic Notes

  1. V. Bafna, D. Gusfield, G. Lancia, and S. Yooseph: Haplotyping as perfect phylogeny: A direct approach. Journal of Computational Biology 10(3–4), 2003, pp. 323–340.

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  2. P. Bonizzoni, G. Della Vedova, R. Dondi, and J. Li: The haplotyping problem: An overview of computational models and solutions. Journal of Computer Science and Technology 18(6), 2003, pp. 675–688.

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  3. A. Clark: Inference of haplotypes from PCR-amplified samples of diploid populations. Molecular Biology and Evolution 7, 1990, pp. 111–122.

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  4. Z. Ding, V. Filkov, D. Gusfield: A linear-time algorithm for the perfect phylogeny haplotyping (PPH) problem. Proceedings of the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB’05), Springer LNCS 3500, pp. 585–600.

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  8. D. Gusfield: An overview of combinatorial methods for haplotype inference. In: S. Istrail, M. Waterman, and A. Clark (Eds.): Computational Methods for SNPs and Haplotype Inference, Springer LNBI 2983, 2004, pp. 9–25.

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  9. B. V. Halldorsson, V. Bafna, N. Edwards, R. Lippert, S. Yooseph, and S. Istrail: Combinatorial problems arising in SNP and haplotype analysis. Proceedings of the 4th International Conference on Discrete Mathematics and Theoretical Computer Science (DMTCS’03), Springer LNCS 2731, 2003, pp. 26–47.

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  10. S. Istrail, M. Waterman, and A. Clark (Eds.): Computational Methods for SNPs and Haplotype Inference, Springer LNBI 2983, 2004.

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  11. G. Lancia, V. Bafna, S. Istrail, R. Lippert, and R. Schwartz: SNPs problems, complexity, and algorithms. Proceedings of the 9th Annual European Symposium on Algorithms (ESA’01), Springer LNCS 2161, 2001, pp. 182–193.

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  13. R. Rizzi, V. Bafna, S. Istrail, and G. Lancia: Practical algorithms and fixed-parameter tractability for the single individual SNP haplotyping problem. Proceedings of the Second International Workshop on Algorithms in Bioinformatics (WABI’02), Springer LNCS 2452, 2002, pp. 29–43.

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© 2007 Springer-Verlag Berlin Heidelberg

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(2007). Haplotyping. In: Algorithmic Aspects of Bioinformatics. Natural Computing Series. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-71913-7_12

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  • DOI: https://doi.org/10.1007/978-3-540-71913-7_12

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-71912-0

  • Online ISBN: 978-3-540-71913-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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