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Population Genetics

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Handbook on Analyzing Human Genetic Data
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Abstract

Understanding population genetics is critical to designing and interpreting results for human genetic studies. Much research has been done in this area in the past century, often involving sophisticated mathematical and computational tools. However, there has been a detachment between theoretical developments and real data analyses primarily due to the lack of data for population genetics studies. The landscape has changed completely due to the recent advances in molecular technologies allowing high-throughput and affordable sequencing and genotyping of a large number of samples. For example, the on-going HapMap project can be considered a very large-scale population genetics study where genetic variation throughout the genome in diverse populations is thoroughly studied. This chapter covers basic statistical tests and procedures involved in the analysis of population genetics data, such as the tests of Hardy–Weinberg equilibrium and linkage equilibrium and characterization of population structure.

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References

  1. The Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447:661–678

    Article  Google Scholar 

  2. Budowle B, Moretti, TR (1999) Genotype profiles for six population groups at the 13 CODIS short tandem repeat core loci and other PCR-based loci. Forensic Science Communications 1999. Available at http://www.fbi.gov.programs/hq/lab/fsc/backissu/july1999/budowle.htm

  3. Curie-Cohen M (1982) Estimates of inbreeding in a natural population: a comparison of sampling properties. Genetics 100:339–358

    CAS  PubMed  Google Scholar 

  4. Guo SW, Thompson, EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361–372

    Article  CAS  PubMed  Google Scholar 

  5. Wigginton JE, Cutler DJ, Abecasis GR (2005) A note on exact tests of Hardy-Weinberg equilibrium. Am J Hum Genet 76:887–893

    Article  CAS  PubMed  Google Scholar 

  6. Weir BS, Hill WG, Cardon LR (2004) Allelic association patterns for a dense SNP map. Genet Epidemiol 24:442–450

    Article  Google Scholar 

  7. Weir BS (1979) Inferences about linkage disequilibrium. Biometrics 35:235–254

    Article  CAS  PubMed  Google Scholar 

  8. Lewis PO, Zaykin D (2001) Genetic Data Analysis: Computer program for the analysis of allelic data. Version 1.0 (d16c). Free program distributed by the authors over the internet from http://lewis.eeb.uconn.edu/lewishome/software.html

  9. Weir BS, Cardon LR, Anderson AD, Nielsen DM, Hill WG (2005) Measures of human population structure show heterogeneity among genomic regions. Genome Res 15:1468–1476

    Article  CAS  PubMed  Google Scholar 

  10. Weir BS, Hill (2002) Estimating F-statistics. Ann Rev Genet 36:721–750

    Google Scholar 

  11. Reynolds J, Weir BS, Cockerham CC (1983) Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics 105:767–779

    PubMed  Google Scholar 

  12. Balding DJ, Bishop M, Cannings C (2007) Handbook of statistical genetics, 3rd ed. Wiley, New York

    Google Scholar 

  13. Weir BS (1996) Genetic Data Analysis II. Sinauer, Sunderland, MA

    Google Scholar 

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© 2009 Springer-Verlag Berlin Heidelberg

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Weir, B. (2009). Population Genetics. In: Handbook on Analyzing Human Genetic Data. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-69264-5_1

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