Abstract
The genomic distance problem in the Hannenhalli-Pevzner theory is the following: Given two genomes whose chromosomes are linear, calculate the minimum number of inversions and translocations that transform one genome into the other. This paper presents a new distance formula based on a simple tree structure that captures all the delicate features of this problem in a unifying way.
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Bergeron, A., Mixtacki, J., Stoye, J. (2008). HP Distance Via Double Cut and Join Distance. In: Ferragina, P., Landau, G.M. (eds) Combinatorial Pattern Matching. CPM 2008. Lecture Notes in Computer Science, vol 5029. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-69068-9_8
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DOI: https://doi.org/10.1007/978-3-540-69068-9_8
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-69066-5
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