Abstract
Potential distribution modelling has been widely used to predict and to understand the geographical distribution of species. These models are generally produced by retrieving the environmental conditions where the species is known to be present or absent and feeding this data into a modelling algorithm. This paper investigates the use of Machine Learning techniques in the potential distribution modelling of plant species Stryphnodendron obovatum Benth (MIMOSACEAE). Three techniques were used: Support Vector Machines, Genetic Algorithms and Decision Trees. Each technique was able to extract a different representation of the relations between the environmental conditions and the distribution profile of the species being considered.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Egbert, S.L., Peterson, A.T., Sanchez-Cordero, C., Price, K.P.: Modeling conservation priorities in Veracruz, Mexico. In: GIS in natural resource management: Balancing the technical-political equation, pp. 141–150 (1998)
Ortega-Huerta, M.A., Peterson, A.T.: Modelling spatial patterns of biodiversity for conservation prioritization in north-eastern Mexico. Diversity and Distributions 10, 39–54 (2004)
Peterson, A.T., Vieglais, D.A.: Predicting species invasions using ecological niche modeling: New approaches from bioinformatics attack a pressing problem. BioScience 51(5), 363–371 (2001)
Peterson, A.T., Papes, M., Kluza, D.A.: Predicting the potential invasive distributions of four alien plant species in north America. Weed Science 51(6), 863–868 (2003)
Huntley, B., Berry, P.M., Cramer, W., McDonald, A.P.: Modelling present and potential future ranges of some european higher plants using climate response surfaces. J. Biogeography 22, 967–1001 (1995)
Pearson, R.G., Dawson, T.P., Berry, P.M., Harrison, P.A.: Species: A spatial evaluation of climate impact on the envelope of species. Ecological Modelling 154, 289–300 (2002)
Peterson, A.T., Ortega-Huerta, M.A., Bartley, J., Sanchez-Cordero, V., Buddemeier, R.H., Stockwell, D.R.B.: Future projections for mexican faunas under global climate change scenarios. Nature 416, 626–629 (2002)
Guisan, A., Thuiller, W.: Predicting species distribution: offering more than simple habitat models. Ecology Letters 8, 993–1009 (2005)
Peterson, A.T., Sanchez-Cordero, V., Beard, C.B., Ramsey, J.M.: Ecologic niche modeling and potential reservoirs for chagas disease, Mexico. Emerging Infectious Diseases 8, 662–667 (2002)
Stockwell, D.R.B., Peters, D.P.: The GARP modelling system: Problems and solutions to automated spatial prediction. International Journal of Geographic Information Systems 13, 143–158 (1999)
Cristianini, N., Shawe-Taylor, J.: An Introduction to Support Vector Machines and other kernel-based learning methods. Cambridge University Press, Cambridge (2000)
Mitchell, T.: Machine Learning. McGraw-Hill, New York (1997)
Elith, J., Crahanm, C.H., Anderson, R.P., Miroslav, M.D., Ferrier, S., Guisan, A., Hijmans, R.J., Hucttmann, F., Leathwick, J.R., Lehmann, A., Li, J., Lohmann, L.G., Loiselle, B.A., Manion, G., Moritz, G., Nakamura, M., Nakazawa, Y., Overton, J.M., Peterson, A.T., Phillips, S.J., Richardson, K., Scachettti-Pereira, R., Schapire, R.E., Soberón, J., Williams, S., Wisz, M.S., Zimmermann, N.: Novel methods improve prediction of species’ distributions from occurrence data. Ecography 29, 129–151 (2006)
Mitchell, M.: An introduction to Genetic Algorithms. MIT Press, Cambridge (1999)
Quinlan, J.R.: Induction of decision trees. Machine Learning 1(1), 81–106 (1986)
Peterson, A.T.: Predicting species’ geographic distributions based on ecological niche modeling. Condor 103(3), 599–605 (2001)
Siqueira, M.F.: Uso de modelagem de nicho fundamental na avaliação do padrão de distribuição geográfica de espécies vegetais. PhD thesis, Escola de Engenharia de São Carlos, Universidade de São Paulo, São Carlos (2005) (in Portuguese)
Soberón, J., Peterson, A.T.: Interpretation of models of fundamental ecological niches and species distributional areas. In: Biodiversity Informatics (2005)
Fielding, A.H.: Machine learning methods for ecological applications. Kluwer Academic, Dordrecht (1999)
Lek, S., Guegan, J.F.: Artificial neural networks as a tool in ecological modelling: an introduction. Ecological Modelling 120, 65–73 (1999)
Ath, G.D., Fabricius, K.E.: Classification and regression trees: a powerful yet simple technique for ecological data analysis. Ecol. 81(11), 3178–3192 (2000)
Pearson, R.G., Dawson, T.P., Liu, C.: Modelling species distribution in britain: a hierarchical integration of climate and land-cover data. Ecography 27, 285–298 (2004)
Siqueira, M.F.D., Peterson, A.T.: Consequences of global climate change for geographic distributions of cerrado tree species. Biota Neotropica 3(2) (2003), http://www.biotaneotropica.org.br/v3n2/pt/abstract?article+BN00803022003
Guo, Q., Kelly, M., Grahan, C.H.: Support vector machines for predicting distribution of sudden oak death in California. Ecol. Modelling 182, 75–90 (2005)
Ratter, J.A., Bridgewater, S., Ribeiro, J.F., Dias, T.A.B., Silva, M.R.: Distribuição das espécies lenhosas da fitofisionomia cerrado sentido restrito nos estados compreendidos no bioma cerrado. Boletim do Herbário Ezechias Paulo Heringer 5, 5–43 (2000) (in portuguese)
Durigan, G., Siqueira, M.F., Franco, G.A.D.C., Bridgewater, S., Ratter, J.A.: The vegetation of priority areas for cerrado conservation in são paulo state, brazil. Edinburgh Journal of Botany 60, 217–241 (2003)
Hijmans, R.J., Cameron, S.E., Parra, J.L., Jones, P.G., Jarvis, A.: Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25, 1965–1978 (2005)
Souza, A.L.F., Giarola, A., Gondim, M.A.: Aplicao de mascaramento de nuvens e correção atmosférica na geração do índice de vegetação por diferença normalizada no cptec/inpe. In: XIV Cong. Brasileiro de Agrometeorologia (2005) (in portuguese)
Quilan, J.R.: C4.5 Programs for Machine Learning. Morgan Kaufmann, San Francisco (1988)
Vapnik, V.N.: The nature of Statistical learning theory. Springer, New York (1995)
Chang, C.C., Lin, C.J.: LIBSVM: a library for support vector machines (2004), http://www.csie.ntu.edu.tw/~cjlin/libsvm/
Demsar, J.: Statistical comparisons of classifiers over multiple datasets. Journal of Machine Learning Research 7, 1–30 (2006)
Author information
Authors and Affiliations
Editor information
Rights and permissions
Copyright information
© 2008 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Lorena, A.C., de Siqueira, M.F., De Giovanni, R., de Carvalho, A.C.P.L.F., Prati, R.C. (2008). Potential Distribution Modelling Using Machine Learning. In: Nguyen, N.T., Borzemski, L., Grzech, A., Ali, M. (eds) New Frontiers in Applied Artificial Intelligence. IEA/AIE 2008. Lecture Notes in Computer Science(), vol 5027. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-69052-8_27
Download citation
DOI: https://doi.org/10.1007/978-3-540-69052-8_27
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-69045-0
Online ISBN: 978-3-540-69052-8
eBook Packages: Computer ScienceComputer Science (R0)