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Cotton

  • Chapter
Technical Crops

Part of the book series: Genome Mapping and Molecular Breeding in Plants ((GENMAPP,volume 6))

Abstract

The most important renewable natural textile fiber worldwide and the world’s sixth largest source of vegetable oil is cotton. After losing some ground to synthetic fibers in the past, the demand for cotton has been steadily growing. Between 1998 and 2003, there were five consecutive records for cotton consumption with a net gain of 2.6 million tons of cotton finding its way to textile mills (Valderrama 2004). The other side of this coin is that the competitiveness of the supply market has also increased. Production is also increasing, as is yield per hectare, and the price of cotton relative to that of other textile fibers is declining (Valderrama 2004; Anonymous 2005). The cotton growers who survive through the next decade will be those who can produce the most cotton per unit input and produce cotton whose characteristics attract price premiums. This is the message being delivered to cotton breeders around the world.

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References

  • Abdalla AM, Reddy OUK, El-Zik KM, Pepper AE (2001) Genetic diversity and relationships of diploid and tetraploid cottons revealed using AFLP. Theor Appl Genet 102:222–229

    CAS  Google Scholar 

  • Altaf MK, Stewart JM, Wajahatullah MK, Zhang J, Cantrell RG (1997) Molecular and morphological genetics of a trispecies F2 population of cotton. Proc Beltwide Cotton Conf; Jan 6–10, 1997, New Orleans, LA, USA, pp 448–452

    Google Scholar 

  • Alvarez I, Cronn R, Wendel JF (2005) Phylogeny of the New World diploid (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes. Plant Syst Evol 245:199–214

    Google Scholar 

  • Anderson CG (1999) Cotton marketing. In: Smith CW, Cothren JT (eds) Cotton: Origin, History, Technology, and Production. John Wiley & Sons, Inc, NY, USA, pp 659–679

    Google Scholar 

  • Anonymous (2005) Cotton: World Markets and Trade. United States Department of Agriculture, Foreign Agricultural Service, Circular Series FC-04-05, April 2005

    Google Scholar 

  • Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208–218

    CAS  Google Scholar 

  • Aslam M, Jiang C, Wright R, Paterson AH (1999) Identification of molecular markers linked to Leaf Curl Virus disease resistance in cotton. Pakistan J Biol Sci 2:124–126

    Google Scholar 

  • Arpat AB, Waugh M, Sullivan JP, Gonzales M, Frisch D, Main D, Wood T, Leslie A, Wing RA, Wilkins TA (2004) Functional genomics of cell elongation in developing cotton fibers. Plant Mol Biol 54:911–929

    PubMed  CAS  Google Scholar 

  • Auld, DL, Ethridge MD, Dever JK, Dotray PD (1998) Chemical mutagenesis as a tool in cotton improvement. Proc Beltwide Cotton Conf, Jan 5–9, 1998, San Diego, CA, USA, pp 550–552

    Google Scholar 

  • Austin DF and Lee M (1996) Comparative mapping in F2.3 and F6.7 generations of quantitative trait loci for grain yield and yield components in maize. Theor Appl Genet 92:817–826

    CAS  Google Scholar 

  • Basten, CJ, Weir BS, and Zeng ZB (1997) QTL cartographer: A reference manual and tutorial for QTL mapping. Dep of Statistics, NC State Univ, Raleigh, USA

    Google Scholar 

  • Basten C, Wier B, Zeng ZB (1999) QTL cartographer, Version 1.13 Dep of Statistics, North Carolina St Univ, Releigh, NC, USA

    Google Scholar 

  • Beasley JO (1940) The origin of American tetraploid Gossypium species. Am Nat 74:285–286

    Google Scholar 

  • Beasley JO (1942) Meiotic chromosome behavior in species, species hybrids, haploids and induced polyploids of Gossypium. Genetics 27:25–54

    PubMed  CAS  Google Scholar 

  • Beasley CA, Egli E (1977) Fiber production in vitro from a conditional fiberless mutant of cotton. Dev Biol 57:234–237

    PubMed  CAS  Google Scholar 

  • Beavis WD (1994) The power and deceit of QTL experiments: lessons from comparative QTL studies. In: Wilkinson DB (ed) Proc 49th Annu Corn Sorghum Res Conf, 7–8 Dec 1994, Chicago, IL, Am Seed Trade Assoc, Washington, DC, pp 250–266

    Google Scholar 

  • Bell AA (1984) Cotton protection practices in the USA and world. Section B: Diseases. In: Kohel RJ, Lewis CF (eds) Cotton, Agronomy Monograph 24. ASSA, Madison, WI, USA, pp 288–309

    Google Scholar 

  • Bennett MD, Smith JB, Heslop-Harrison JS (1982) Nuclear DNA amounts in angiosperms. Proc R Soc Lond B 216:79–199

    Google Scholar 

  • Bezawada C, Saha S, Jenkins JN, Creech RG, McCarty JC (2003) SSR Marker(s) associated with root knot nematode resistance gene(s) in cotton. J Cotton Sci 7:179–184

    CAS  Google Scholar 

  • Bragg CK, Shofner FM (1993) A rapid direct measurement of short fiber content. Textile Res J 63:171–176

    Google Scholar 

  • Brown MS, Menzel MY (1950) New trispecies hybrids in cotton. J Hered 41:291–295

    Google Scholar 

  • Brubaker CL, Wendel JF (1993) On the specific status of Gossypium lanceolatum Todaro. Genet Resour Crop Evol 40:165–170

    Google Scholar 

  • Brubaker CL, Wendel JF (1994) Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs). Am J Bot 81:1309–1326

    Google Scholar 

  • Brubaker CL, Paterson AH, Wendel JF (1999) Comparative genetic mapping of allotetraploid cotton and its diploid progenitors. Genome 42:184–203

    CAS  Google Scholar 

  • Brubaker CL, Bourland F, Wendel J (1999) The origin and domestication of cotton. In: Smith C, Cothren J (eds) Cotton: Origin, History, Technology, and Production. Wiley, New York, USA, pp 3–31

    Google Scholar 

  • Brubaker CL, Brown AHD (2003) The use of multiple alien chromosome addition aneuploids facilitates genetic linkage mapping of the Gossypium G genome. Genome 46:774–791

    PubMed  CAS  Google Scholar 

  • Chee PW, Lubbers EL, El-Zik KM, Gannaway JR, May OL, Wright RJ, Paterson AH (2003) Secondary Gene Pool Contributions in Domesticated Cotton. In: 2003 Agronomy Abstracts. ASA, Madison, WI, USA

    Google Scholar 

  • Chee PW, Lubbers EL, Gannaway JR, Paterson AH (2004) Changes in genetic diversity of U.S. Upland cotton. In: Proc Beltwide Cotton Conf, 5–9 Jan 2004, San Antonio, TX Natl Cotton Council, Memphis, TN, USA

    Google Scholar 

  • Chee PW, Draye X, Jiang C-X, Decanini L, Delmonte TA, Bredhauer R, Smith CW, Paterson AH (2005) Molecular dissection of phenotypic variation between Gossypium hirsutum and G. barbadense (cotton) by a backcross-self approach: III. Fiber length. Theor Appl Genet 111:772–781

    PubMed  CAS  Google Scholar 

  • Colbert T, Till BJ, Tompa R, Reynolds S, Steine MN, Yeung AT, McCallum CM, Comai L, Henikoff S (2201) High-throughput screening for induced point mutations. Plant Physiol 126:480–484

    Google Scholar 

  • Comstock RE (1955) Theory of quantitative genetics: Synthesis. Cold Spring Harbor Symp on Quantitative Biol 20:93–102

    CAS  Google Scholar 

  • Cook OF (1906) Weevil-resisting adaptations of the cotton plant United States Department of Agriculture Bureau of Plant Industry Bulletin 88. Government Printing Office, Washington, DC, USA

    Google Scholar 

  • Cox DR, Burmeister M, Price ER, Kim S, Myers RM (1993) Radiation hybrid mapping: a somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250:245–250

    Google Scholar 

  • Cronn RC, Zhao X, Paterson AH, Wendel JF (1996) Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons. J Mol Evol 42:685–705

    PubMed  CAS  Google Scholar 

  • Cronn R, Small RL, Haselkorn T, Wendel JF (2003) Cryptic repeated genomic recombination during speciation in Gossypium gossypioides. Evolution 57:2475–2489

    PubMed  CAS  Google Scholar 

  • Damp JE, Pearsall DM (1994) Early cotton from coastal Ecuador. Econ Bot 48:163–165

    Google Scholar 

  • Demol J, Louant BP, Moreau JM (1972) Sur l’utilizsation de l’hybride trispécifique hirsutumarboreumthurberi (HAT) en amélioration cotonnière. III. Succès rencontrés et perspectives d’avenir. Bull Rech Agron Gembloux 7:41–58

    Google Scholar 

  • Desai A (2005) Comparison of marker order synteny and floral trait evolution among diploid and tetraploid genomes of Gossypium. MSc Thesis, Univ of Georgia, USA

    Google Scholar 

  • Desai A, Chee PW, Rong J, May OL, Paterson, AH (2006) Chromosome structural changes in diploid and tetraploid A genomes of Gossypium. Genome 49:336–345

    PubMed  Google Scholar 

  • Deussen H (1992) Improved cotton fiber properties: The textile industry’s key to success in global competition. In: Benedict CR, Jividen GM (eds) Cotton Fiber Cellulose: Structure, Function, Utilization Conference. 1992 Natl Cotton Council, Memphis, TN, USA, pp 43–63

    Google Scholar 

  • Drenkard E, Richter BG, Rozen S, Stutius LM, Angell NA, Mindrinos M, Cho RJ, Oefner PJ, Davis RW, Ausubel FM (2000) A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiol 124:1483–1492

    PubMed  CAS  Google Scholar 

  • Edwards GA, Mirza MA (1979) Genomes of the Australian wild species of cotton II. The designation of a new G genome for Gossypium bickii. Can J Genet Cytol 21:367–372

    Google Scholar 

  • Edwards GA, Endrizzi JE, Stein R (1974) Genome DNA content and chromosome organization in Gossypium. Chromosoma 47:309–326

    Google Scholar 

  • Edwards M, Helentjaris D, Wright S, Stuber CW (1992) Molecular-marker facilitated investigations of quantitative trait loci in maize. Theor Appl Genet 83:765–774

    CAS  Google Scholar 

  • Endrizzi JE, Turcotte EL, Kohel JR (1984) Genetics, cytogenetics, and evolution of Gossypium. In: Kohel JR, Lewis CF (eds) Cotton, Agron Monogr 24. ASA, Madison, WI, USA, pp 81–129

    Google Scholar 

  • Endrizzi JE, Turcotte EL, Kohel RJ (1985) Genetics, cytology, and evolution of Gossypium. Adv Genet 23:271–375

    Google Scholar 

  • Endrizzi JE, Nelson R (1989) Linkage analysis and arm location of the open bud (Ob1) and yellow petal (Y2) loci in chromosome 18 of cotton. Genome 32:1041–1043

    Google Scholar 

  • Feldman M, Liu B, Segal G, Abbo S, Levy AA, Vega JM (1997) Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics 147:1381–1387

    PubMed  CAS  Google Scholar 

  • Feng CD, Stewart MD, Zhang JF (2005) STS markers linked to the Rf1 fertility restorer gene of cotton. Theor Appl Genet 110:237–243

    PubMed  CAS  Google Scholar 

  • Fisher RA (1918) The correlation between relatives on the supposition of Mendelian inheritance. Trans R Soc Edinburgh 52:399–433

    Google Scholar 

  • Frelichowski JE, Ulloa M, Palmer M, Main D, Tomkins JP, Stelly DM, Cantrell RG, Kohel RJ, Yu J (2005) Genetic, physical and QTL mapping assessments of BAC-end derived microsatellite markers developed from cotton (Gossypium. hirsutum L.) Acala ‘Maxxa’. In: Plant and Animal Genome XIII Conf, San Diego, CA, USA

    Google Scholar 

  • Frelichowski JE, Palmer M, Main D, Tomkins JP, Cantrell RG, Stelly DM, Yu J, Kohel RJ, Ulloa M (2006) Genetic mapping of microsatellites derived from BAC-end sequences of Gossypium hirsutum Acala ‘Maxxa’. Mol Genet Genom 275(5):479–491

    CAS  Google Scholar 

  • Fryxell PA (1979) the Natural History of the Cotton Tribe. Texas A&M Univ Press, College Station, TX, USA

    Google Scholar 

  • Fryxell PA (1992) Arevised taxonomic interpretation of Gossypium L (Malvaceae). Rheedea 2:108–165

    Google Scholar 

  • Galau GA, Wilkins TA (1989) Alloplasmic male sterility in AD allotetraploid Gossypium hirsutumupon replacement of its resident A cytoplasm with that of D species G. harknessii. Theor Appl Genet 78:23–30

    Google Scholar 

  • Gao W (2003) Wide-cross whole-genome radiation hybrid (WWRH) mapping and identification of cold-responsive genes using oligo-gene microarray analysis in cotton, PhD Dissertation, Texas A&M Univ, USA

    Google Scholar 

  • Gerstel DU (1953) Chromosomal translocations in interspecific hybrids of the genus Gossypium Evolution 7:234–244

    Google Scholar 

  • Gerstel DU, Sarvella PA (1956) Additional observations on chromosomal translocations in cotton hybrids. Evolution 10:408–414

    Google Scholar 

  • Goldberg RB (1978) DNA sequence organization in the soybean plant. Biochem Genet 16:45–68

    PubMed  CAS  Google Scholar 

  • Gomez M, Johnston JS, Ellison JR, Price HJ (1993) Nuclear 2c DNA content of Gossypium hirsutum L. accessions determined by flow cytometry. Biol Zent Bl 112:351–357

    CAS  Google Scholar 

  • Griffee F, Ligon LL (1929) Occurrence of lintless cotton plants and the inheritance of the character ‘lintless.’ J Am Soc Agron 21:711–717

    Google Scholar 

  • Groh S, Gonzalez-de-leon D, Khairallah MM, Jiang C, Bergvinson D, Bohn M, Hoisington DA, Melchinger AE (1998) QTL mapping in tropical maize: III. Genomic regions for resistance to Diatraea spp. and associated traits in two RIL populations. Crop Sci 38:1062–1072

    Google Scholar 

  • Grover CE, Kim HR, Wing RA, Paterson AH, Wendel JF (2004) Incongruent patterns of local and global genome size evolution in cotton. Genome Res 14:1474–1482

    PubMed  CAS  Google Scholar 

  • Gulati AN, Turner AJ (1928) A note on the early history of cotton. Ind Cent Cotton Committee, Tech Lab Bull No 17

    Google Scholar 

  • Guo W, Zhang T, Pan J, Kohel RJ (1998) Identification of RAPD marker linked with fertility-restoring gene of cytoplasmic male sterile lines in upland cotton. China Sci Bull 43:52–54

    CAS  Google Scholar 

  • Guo W, Zhang T, Xinlian S, Yu JZ, Kohel RJ (2003) Development of a SCAR marker linked to a major QTL for high fiber strength and its usage in molecular-marker assisted selection in Upland cotton. Crop Sci 43:2252–2256

    CAS  Google Scholar 

  • Gutiérrez OA, Basu S, Saha S, Jenkins JN, Shoemaker DB, Cheatham CL, McCarty JC Jr (2002) Genetic distance among selected cotton genotypes and its relationship with F2 performance. Crop Sci 42:1841–1847

    Google Scholar 

  • Han ZG, Guo WZ, Song XL, Zhang TZ (2004) Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton. Mol Gen Genet 272:308–327

    CAS  Google Scholar 

  • Han Z, Wang C, Song X, Guo WZ, Gou J, Li C, Chen X, Zhang TZ (2006) Characteristics, development and mapping of Gossypium hirsutun derived EST-SSR in allotetraploid cotton. Theor Appl Genet 112:430–439

    PubMed  CAS  Google Scholar 

  • Harrell SC, Culp TW (1979) Registration of Pee Dee 0259 and Pee Dee 2165 germplasm lines of cotton (Reg No GP39 and GP40). Crop Sci 19:418

    Google Scholar 

  • Hasenkampf CA, Menzel MY (1980) Incipient genome differentiation in Gossypium. II. Comparison of 12 chromosomes in G. hirsutum, G. mustelinum and G. tomentosum using heterozygous translocations. Genetics 95:971–983

    PubMed  Google Scholar 

  • Hossein GM, Baldwin JC, Khan MA (1994) AFIS advancement in neps and length measurements. In: Heber DJ, Richter DA (eds) Proc Belt Cotton Res Conf, San Diego, CA, 5–8 Jan 1994, Nat. Cotton Council, memphis, TN, USA, pp 1433–1436

    Google Scholar 

  • Huang N, Angeles ER, Domingo J, Magpantay G, Singh S, Zhang G, Kumaravadivel N, Bennet J, Khush GS (1997) Pyramiding of bacterial blight resistance in rice: marker-assisted selection using RFLP and PCR. Theor Appl Genet 95:313–320

    CAS  Google Scholar 

  • Hutchinson JB (1951) Intra-specific differentiation in Gossypium hirsutum. Heredity 5:161–193

    Google Scholar 

  • Hutchinson JB (1954) New evidence on the origin of the Old World cottons. Heredity 8:225–241

    Google Scholar 

  • Hutchinson JB (1959) The application of genetics to cotton improvement. Cambridge Univ Press, UK

    Google Scholar 

  • Hutchinson JB, Manning HL (1945) The Sea Island cottons. Emp J Exp Agric 13:80–92

    Google Scholar 

  • Hutchinson JB, Silow RA, Stephens SG (1947) The evolution of Gossypium. Oxford Univ Press, London, UK

    Google Scholar 

  • Hutchinson JG, Ghose RLM (1937) The classification of the cottons of Asia and Africa. Ind J Agric Sci 7:233–257

    Google Scholar 

  • Iqbal MJ, Reddy OUK, El-Zik KM, Pepper AE (2001) A genetic bottleneck in the ‘evolution under domestication’ of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theor Appl Genet 103:547–554

    CAS  Google Scholar 

  • Jansen RC (1994) Controlling the type I and type II errors in mapping quantitative trait loci. Genetics 138:871–881

    PubMed  CAS  Google Scholar 

  • Jiang C, Writght RJ, EL-Zik KM, Paterson AH (1998) Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proc Natl Acad Sci USA 95:4419–4424

    PubMed  CAS  Google Scholar 

  • Jiang C, Wright RJ, Woo SS, DelMonte TA, Paterson AH (2000) QTL analysis of leaf morphology in tetraploid Gossypium (cotton). Theor Appl Genet 100:409–418

    CAS  Google Scholar 

  • Johnson WH (1926) Cotton and its Production. McMillan, London, UK, 536 p

    Google Scholar 

  • Joseph M, Gopalakrishnan S, Sharma RK, Singh VP, Singh AK, Singh NK, Mohapatra T (2004) Combining bacterial blight resistance and Basmati quality characteristics by phenotypic and molecular marker-assisted selection in rice. Mol Breed 13:377–387

    CAS  Google Scholar 

  • Joyner S (1985) SAS/STAT Guide for personal computer. SAS Institute, Cary, North Carolina, USA

    Google Scholar 

  • Kadir ZBA (1976) DNA evolutionin the genusGossypium. Chromosoma 56:85–94

    CAS  Google Scholar 

  • Karaca M, Saha S, Jenkins JN, Zipf A, Kohel RJ, Stelly DM (2002) Simple sequence repeat (SSR) markers linked to the Ligon Lintless (Li1) mutant in cotton. J Hered 93(3):221–224

    PubMed  CAS  Google Scholar 

  • Kearney TH, Harrison GJ (1927) Inheritance of smooth seeds in cotton. J Agric Res 35:193–217

    Google Scholar 

  • Kohel RJ (1999) Cotton germplasm resources and the potential for improved fiber productivity and quality. In: Basra AS (ed) Cotton Fibers: Developmental Biology, Quality Improvement, and Textile Processing. Food Products Press, Binghamton, NY, USA, pp 167–182

    Google Scholar 

  • Kohel RJ, Yu J, Park Y-H, Lazo GR (2001) Molecular mapping and characterization of traits controlling fiber quality in cotton. Euphytica 121:163–172

    CAS  Google Scholar 

  • Kohel RJ, Stelly DM, Yu J (2002) Tests of six cotton (Gossypium hirsutum L.) mutants for association with aneuploids. J Hered 93:130–132

    PubMed  CAS  Google Scholar 

  • Kohel RJ, Bird LS (2002) Inheritance and linkage analysis of the yellow pulvinus mutant of cotton. J Cotton Sci 6:115–118

    Google Scholar 

  • Kohel RJ, Yu J, Dong J, Steele NL, Zhang H, Xu Z (2003) Integrated genome mapping for cotton improvement. Natl Cotton Council Beltwide Cotton Conf. Natl Cotton Council Am, Memphis, TN, USA

    Google Scholar 

  • Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B (2003) A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutum x Gossypium barbadense backcross population. Genome 46:612–626

    PubMed  CAS  Google Scholar 

  • Lacape J-M, Nguyen T-B, Courtis B, Belot J-L, Giband M, Gourlot J-P, Gawryziak G, Roques S, Hau B (2005) QTL Analysis of cotton fiber quality using multiple Gossypium hirsutum x Gossypium barbadense backcross generations. Crop Sci 45:123–140

    CAS  Google Scholar 

  • Lagercrantz U, Lydiate DJ (1996) Comparative genomemapping in Brassica. Genetics 144:1903–1910

    PubMed  CAS  Google Scholar 

  • Lan T, Cook CG, Paterson AH (1999) Identification of a RAPD marker linked to a male fertility restoration gene in cotton (Gossypium hirsutum L.). J Agric Genom 4:1–5

    Google Scholar 

  • Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural population. Genomics 1:174–181

    PubMed  CAS  Google Scholar 

  • Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185–199

    PubMed  CAS  Google Scholar 

  • Langley CH, Lazzaro BP, Phillips W, Heikkinen E, Braverman JM (2000) Linkage disequilibria and the site frequency spectra in the su(s) and su(w(a)) regions of the Drosophila melanogaster X chromosome. Genetics 156:1837–1852

    PubMed  CAS  Google Scholar 

  • Lee JA (1985) Revision of the genetics of the hairiness-smoothness system of Gossypium. J Hered 76:123–126

    Google Scholar 

  • Liu S, Cantrell RG, McCarty JC, Stewart McD (2000) Simple sequence repeat-based assessment of genetic diversity in cotton race stock accessions. Crop Sci 40:1459–1469

    CAS  Google Scholar 

  • Liu Q, Brubaker CL, Green AG, Marshall DR, Sharp PJ, Singh SP (2001) Evolution of the FAD2-1 fatty acid desaturase 5′ UTR intron and the molecular systematics of Gossypium (Malvaceae). Am J Bot 88:92–102

    PubMed  CAS  Google Scholar 

  • Liu L, Guo W, Zhu X, Zhang T (2003) Inheritance and fine mapping of fertility restoration for cytoplasmic male sterility in Gossypium hirsutum L. Theor Appl Genet 106:461–469

    PubMed  CAS  Google Scholar 

  • Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart JM (2005) Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant Breed 124:180–187

    CAS  Google Scholar 

  • Lin ZX, Zhang XL, Nie YC, He DH, Wu MQ (2003) Construction of a genetic linkage map for cotton based on SRAP. Chinese Sci Bull 48:2063–2067

    CAS  Google Scholar 

  • Liu B, Brubaker CL, Mergeai G, Cronn RC, Wendel JF (2001) Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 44:321–330

    PubMed  CAS  Google Scholar 

  • Liu B, Vega JM, Feldman M (1998a) Rapid Genomic changes in newly synthesized amphiploids of Triticum and Aegilops — II — changes in low-copy coding DNA sequences. Genome 41:535–542

    PubMed  CAS  Google Scholar 

  • Liu B, Vega JM, Segal G, Abbo S, Rodova H, Feldman M (1998b) rapid genomic changes in newly synthesized amphiploids of Triticumand Aegilops. I. changes in low-copy noncoding DNA sequences. Genome 41:272–277

    CAS  Google Scholar 

  • McCallum CM, Comai L, Greene EA, Henikoff S (2000b) Targeted screening for induced mutations. Nat Biotechnol 18:455–457

    PubMed  CAS  Google Scholar 

  • May OL (1999) Genetic variation in fiber quality. In: Basra AS (ed) Cotton Fibers: Developmental Biology, Quality Improvement, and Textile Processing. Food Products Press, Binghamton NY, USA, pp 183–230

    Google Scholar 

  • Mei M, Syed NH, Gao W, Thaxton PM, Smith CW, Stelly DM, Chen ZJ (2004) Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium). Theor Appl Genet 108:280–291

    PubMed  CAS  Google Scholar 

  • Meissner R, Chague V, Zhu Q, Emmanuel E, Elkind Y, Levy A (2000) A high-throughput system for transposon-tagging and promoter trapping in tomato. Plant J 22:265–274

    PubMed  CAS  Google Scholar 

  • Melchinger AE, Utz HF, Schon CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149:383–403

    PubMed  CAS  Google Scholar 

  • Menzel MY, Brown MS (1954) The significance of multivalent formation in three-species Gossypium hybrids. Genetics 39:546–557

    PubMed  CAS  Google Scholar 

  • Menzel MY, Brown MS, Naqi S (1978) Incipient genome differentiation in Gossypium. I. Chromosomes 14,15,16,19 and 20 assessed in G. hirsutum, G. raimondii and G. lobatum by means of seven A-D translocations. Genetics 90:133–149

    PubMed  Google Scholar 

  • Menzel MY, Hasenkampf CA, Stewart JM (1982) Incipient genome differentiation in Gossypium. III. Comparison of chromosomes of G. hirsutum and Asiatic diploids using heterozygous translocations. Genetics 100:89–103

    PubMed  Google Scholar 

  • Menzel MY, Naqi S, Brown MS (1984) Incipient genome differentiation in Gossypium. IV. The genome of G. laxum. J Hered 75:389–391

    Google Scholar 

  • Meredith WR (1991) Contributions of introductions to cotton improvement. In: Shands HL, Wiesner LE (eds) Use of Plant Introductions in Cultivar Development, part 1. Crop Science Society of America, Madison, WI, USA, pp 127–146

    Google Scholar 

  • Meredith WR Jr, Culp TW, Robert KQ, Ruppenicker GF, Anthony WS, Williford JR (1991) Determining future cotton variety fiber quality objectives. Text Res J 61:720–723

    Google Scholar 

  • Meyer JR (1957) Origin and inheritance of D2 smoothness in upland cotton. Crop Sci 48:249–250

    Google Scholar 

  • Meyer JR, Meyer VG (1961) Origin and inheritance of nectariless cotton. Crop Sci 1:167–169

    Google Scholar 

  • Meyers VG (1975) Male sterility from Gossypium harknessii. J Hered 66:23–27

    Google Scholar 

  • Michaelson MJ, Price HJ, Ellison JR, Johnston JS (1991) Comparison of plant DNA contents determined by Feulgen microspectrophotometry and laser flow cytometry. Am J Bot 78:183–188

    CAS  Google Scholar 

  • Monforte AJ, Tanksley SD (2000) Fine mapping of a quantitative trait locus (QTL) from Lycopersicon hirsutum chromosome 1 affecting fruit characteristics and agronomic traits: breaking linkage among QTLs affecting different traits and dissection of heterosis for yield. Theor Appl Genet 100:471–479

    CAS  Google Scholar 

  • Muravenko OV, Fedotov AR, Punina EO, Fedorova LI, Grif VG, Zelenin AV (1998) Comparison of chromosome Brdu-Hoechst-Giemsa banding patterns of the A(1) and (AD)(2) genomes of cotton. Genome 41:616–625

    CAS  Google Scholar 

  • Ndungo V, Demol J, Marechal R (1988) L’amélioration du cotonnier Gossypium hirsutum L. par hybridation interspécifique. Publications agricoles No. 23. Faculté des Sciences Agronomiques de l’Etat, Gembloux, Belgium

    Google Scholar 

  • Nelson C (1996) QGENE Macintosh software for DNA-marker-based genetic analysis. Version 2.26. Dept of Plant Breeding and Biometry, Cornell Univ, Ithaca, NY, USA

    Google Scholar 

  • Nguyen T-B, Giband M, Brottier P, Risterucci A-M, Lacape JM (2002) Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor Appl Genet 109:167–175

    Google Scholar 

  • Niles GA, Feaster CV (1984) Breeding. In: Kohel RJ, Lewis CF (eds) Cotton. Am Soc Agron, Madison, WI, USA, pp 201–231

    Google Scholar 

  • O’Brien SJ (1993) Genetic Maps. O’Brian SJ (ed) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA

    Google Scholar 

  • Park Y-H, Alabady MS, Sickler B, Wilkins TA, Yu J, Stelly DM, Kohel RJ, El-Shihy OM, Cantrell RG, Ulloa M (2005) Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line (RIL) cotton population. Mol Genet Genom 274:428–441

    CAS  Google Scholar 

  • Paterson AH, Smith RH (1999) Future horizons: Biotechnology for cotton improvement. In: Smith WC (ed) Cotton: Origin, History, Technology, and Production. John Wiley and Sons, Inc, NY, USA, pp 415–432

    Google Scholar 

  • Paterson AH, Saranga Y, Menz M, Jiang C, Wright RJ (2003) QTL analysis of genotype x environmental interactions affecting cotton fiber quality. Theor Appl Genet 106:384–396

    PubMed  CAS  Google Scholar 

  • Percival AE (1987) The national collection of Gossypium germplasm. USDA Southern Crops Ser Bull 321. Dept Agric Comm, Texas A&M Univ, College Station, TX, USA

    Google Scholar 

  • Percival AE, Wendel JF, Stewart JM (1999) Taxonomy and Germplasm Resources. In: Smith CW, Cothren J (eds) Cotton: Origin, History, Technology, and Production. John Wiley & Sons, Inc, NY, USA, pp 33–63

    Google Scholar 

  • Percy RG, Wendel JF (1990) Allozyme evidence for the origin and diversification of Gossypium barbadense L. Theor Appl Genet 79:529–542

    Google Scholar 

  • Percy RG, Kohel RJ (1999) Qualitative Genetics. In: Smith CW, Cothren J (eds) Cotton: Origin, History, Technology, and Production John Wiley & Sons, Inc, NY, USA, pp 319–360

    Google Scholar 

  • Percy RG (1999) Inheritance of cytoplasmic-virescent cyt-v and dense-glanding dg mutants in American Pima cotton. Crop Sci 39:372–374

    Google Scholar 

  • Phillips LL (1961) The cytogenetics of speciation in Asiatic cotton. Genetics 46:77–83

    PubMed  CAS  Google Scholar 

  • Phillips LL, Strickland MA (1966) The cytology of a hybrid between Gossypium hirsutum and G. longicalyx. Can J Genet Cytol 8:91–95

    Google Scholar 

  • Quiros CF, Hu J, Truco MJ (1994) DNA-based marker maps of Brassica. In: Phillips RL, Vasil IK (eds) DNA-based Markers in Plants. Kluwer Academic Publ, Dordrecht, The Netherlands, pp 199–222

    Google Scholar 

  • Ramey HH (1966) Historical review of cotton variety development. Proc of 18th Cotton Improv Conf, Memphis, TN, USA

    Google Scholar 

  • Reich DE, Cargill M, Bolk S, Ireland J, Sabeti PC, Richter DJ, Lavery T, Kouyoumjian R, Farhadian SF, Ward R, Lander ES (2001) Linkage disequilibrium in the human genome. Nature 411:199–204

    PubMed  CAS  Google Scholar 

  • Reinisch AJ, Dong JM, Brubaker CL, Wendel JF, Paterson AH (1994) A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics 138:829–847

    PubMed  CAS  Google Scholar 

  • Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR, Doeblay J, Kresovich S, Goodman MM, Buckler ES (2001) Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Nat Acad Sci USA 98:11479–11484

    PubMed  CAS  Google Scholar 

  • Ren L, Gou W, Zhang T (2002) Identification of quantitative trait loci (QTLs) affecting yield and fiber properties in chromosome 16 in cotton substitution line. Acta Bot Sin 44:815–820

    CAS  Google Scholar 

  • Rong J-K, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding XL, Garza JJ, Marler BS, Park C-H, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH (2004) A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics 166:389–417

    PubMed  CAS  Google Scholar 

  • Rong J, Pierce GJ, Waghmare VN, Rogers C, Desai A, Chee PW, May OL, Gannaway JR, Wendel JF, Wilkins TA, Paterson AH (2005) Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton. Theor Appl Genet 111:1137–1146

    PubMed  CAS  Google Scholar 

  • Rungis D, Llewellyn D, Dennis ES, Lyon BR (2002) Investigation of the chromosomal location of the bacterial blight resistance gene present in an Australian cotton (Gossypium hirsutum L.) cultivar. Aust J Agric Res 53:551–560

    CAS  Google Scholar 

  • Saha S, Wu J, Jenkins JN, McCarty Jr JC, Gutierrez OA, Stelly DM, Percy RG, Raska DA (2004) Effect of Chromosome substitutions from Gossypium barbadense L. 3-79 into G. hirsutum L. TM-1 on agronomic and fiber traits. J Cotton Sci 8:162–169

    CAS  Google Scholar 

  • Sachidanandam R, Weissman D, Schmidt SC, Kakol JM, Stein LD, Mullikin JC, Mortimore BJ, Willey DL, Hunt SE, Cole CG, Coggill PC, Rice CM, Ning ZM, Rogers J, Bentley DR, Kwok PY, Mardis ER, Yeh RT, Schultz B, Cook L, Davenport R, Dante M, Fulton L, Hillier L, Waterston RH, McPherson JD, Gilman B, Schaffner S, Van Etten WJ, Reich D, Higgins J, Daly MJ, Blumenstiel B, Baldwin J, Stange-Thomann NS, Zody MC, Linton L, Lander ES, Altschuler D (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409:928–933

    PubMed  CAS  Google Scholar 

  • Saranga Y, Menz M, Jiang C, Wright RJ, Yakir D, Paterson AH (2001) Genomic Dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome Res 11:1988–1995

    PubMed  CAS  Google Scholar 

  • Saunders JH (1961) The Wild Species of Gossypium and their Evolutionary History. Oxford Univ Press, London, UK

    Google Scholar 

  • Seelanan T, Schnabel A, Wendel JF (1997) Congruence and consensus in the cotton tribe. Syst Bot 22:259–290

    Google Scholar 

  • Senchina DS, Alvarez I, Cronn RC, Liu B, Rong JK, Noyes RD, Paterson AH, Wing RA, Wilkins TA, Wendel JF (2003) Rate variation among nuclear genes and the age of polyploidy in Gossypium. Mol Biol Evol 20:633–643

    PubMed  CAS  Google Scholar 

  • Shappley ZW, Jenkins JN, Meredith WR, McCarty, JC Jr (1998) An RFLP linkage map of Upland cotton, Gossypium hirsutum L. Theor Appl Genet 97:756–761

    CAS  Google Scholar 

  • Shappley ZW, Jenkins JN, Zhu J, McCarty JC (1998). Quantitative trait loci associated with agronomic and fiber traits of Upland Cotton. J Cotton Sci 4:153–163

    Google Scholar 

  • Shen X, Zhang T, Guo W, Zhu X, Yuan Y, Zhang X (2005) Mapping fiber and yield QTLs with main, epistatic, and QTL x environment interaction effects in recombinant inbred lines of Upland cotton. Crop Sci 46:61–66

    Google Scholar 

  • Shen X, Guo W, Zhu X, Yuan Y, Yu JZ, Kohel RJ, Zhang T (2005) Molecular mapping of QTLs for qualities in three diverse lines in Upland cotton using SSR markers. Mol Breed 15:169–181

    CAS  Google Scholar 

  • Silow RA (1944) The genetics of species development in the Old World cottons. J Genet 46:62–77

    Google Scholar 

  • Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF (1998) The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. Am J Bot 85:1301–1315

    CAS  Google Scholar 

  • Song K, Lu P, Tang K, Osborn TC (1995) Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Nat Acad Sci USA 92:7719–7723

    PubMed  CAS  Google Scholar 

  • Sprague GF (1955) Problems in the estimation and utilization of genetic variability. Cold Spring Harbor Symp on Quantitative Biol 20:87–92

    CAS  Google Scholar 

  • Stanton MA, Stewart JM, Percival AE, Wendel JF (1994) Morphological diversity and relationships in the A-genome cottons, Gossypium arboreum and G. herbaceum. Crop Sci 34:519–527

    Google Scholar 

  • Stelly DM (1993) Interfacing cytogenetics with the cotton genome mapping effort. In: Proc Beltwide Cotton Conf, New Orleans, LA, 10–14 Jan 1993, Natl Cotton Council, Memphis, TN, USA, pp 1545–1550

    Google Scholar 

  • Stephens SG (1946) The genetics of ‘Corky’. The New World alleles and their possible role as an interspecific isolating mechanism. J Genet 47:150–161

    Google Scholar 

  • Stephens SG (1950) The internal mechanism of speciation in Gossypium. Bot Rev 16:115–149

    Google Scholar 

  • Stephens SG (1967) Evolution under domestication of the New World cottons (Gossypium spp). Ciência e Cultura 19:118–134

    Google Scholar 

  • Shepherd RL (1974) Breeding rootknotresistant Gossypium hirsutum L. using a resistant wild G. barbadense L. Crop Sci 14:687–691

    Google Scholar 

  • Shepherd RL (1982) Registration of Auburn 634. Crop Sci 22:642

    Google Scholar 

  • Stewart MJ (1992) A new cytoplasmic male sterile and restorer. Proc Beltwide Cotton Conf, USA, p 610

    Google Scholar 

  • Stewart JM (1995) Potential for crop improvement with exotic germplasm and genetic engineering. In: Constable GA, Forrester (eds) Challenging the Future. Proc World Cotton Res Conf 1 CSIRO, Melbourne, Australia, pp 313–327

    Google Scholar 

  • Tanksley SD, Hewitt J (1988) Use of molecular markers in breeding for soluble solids content in tomato: A re-examination. Theor Appl Genet 75:811–823

    CAS  Google Scholar 

  • Tanksley SD, Ganal MW, Martin GB (1995) Chromosome landing: a paradigm from map-based gene cloning in plants with large genomes. Trends Genet 11:63–68

    PubMed  CAS  Google Scholar 

  • Templeton AR, Weiss KM, Nickerson DA, Boerwinkle E, Sing CF (2000) Cladistic structure within the human Lipoprotein lipase gene and its implications for phenotypic association studies. Genetics 156:1259–1275

    PubMed  CAS  Google Scholar 

  • Thinker NA, Mather DE (1995) MQTL: software for simplified composite interval mapping of QTL in multiple environments. J Quant Loci ftp://gnome.agrenv.mcgill.ca/software/MQTL

    Google Scholar 

  • Thornsberry JM, Goodman MM, Doebley J, Kresovich S, Nielsen D, Buckler ES (2001) Dwarf8 polymorphisms associate with variation in flowering time. Nat Genet 28:286–289

    PubMed  CAS  Google Scholar 

  • Tomkins JP, Peterson DG, Yang TJ, Main D, Wilkins TA, Paterson AH, Wing RA (2001) Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development. Mol Breed 8(3):255–261

    CAS  Google Scholar 

  • Turcotte EL, Percy RG (1990) Genetics of kidney seed in Gossypium barbadense L. Crop Sci 30:384–386

    Google Scholar 

  • Ulloa M, Meredith Jr WR, Percy R, Moser H (1999) Genetic variability within improved germplasm of Gossypium hirsutum and G. barbadense cottons. Crop Sci abstr, Annu Mtg ASA, CSSA, SSSA, Madison, WI, USA, p 73

    Google Scholar 

  • Ulloa M, Cantrell RG, Percy R, Lu Z, Zeiger E (2000) QTL Analysis of stomatal conductance and relationship to lint yield in an interspecific cotton. J Cotton Sci 4:10–18

    CAS  Google Scholar 

  • Ulloa M, Meredith WR Jr (2000) Genetic linkage map and QTL analysis of agronomic and fiber quality traits in an intraspecific population. J Cotton Sci 4:161–170

    CAS  Google Scholar 

  • Ulloa M, Percy R (2002) Comparison of genetic diversity within improved germplasm of cottons with RFLP, SSR, and RAPD markers. Crop Sci abstrs, Annul Mtg ASA, CSSA, SSSA, Madison, WI, USA, p 189

    Google Scholar 

  • Ulloa M, Meredith WR Jr, Shappley ZW, Kahler AL (2002) RFLP genetic linkage maps from four F2.3 populations and a joinmap of Gossypium hirsutum L. Theor Appl Genet 104:200–208

    PubMed  CAS  Google Scholar 

  • Ulloa M, Meredith WR Jr (2002) QTL Examination on a RFLP joinmap from four intraspecific cotton populations. In: Plant, Animal & Microbe Genome X Conf, San Diego, CA, USA, p 247

    Google Scholar 

  • Ulloa M, Saha S, Jenkins JN, Meredith WR Jr, McCarty JC, Stelly MD (2005) Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap. J Hered 96:132–144

    PubMed  CAS  Google Scholar 

  • Ulloa M, Mc Stewart J, Garcia CE, Godoy AS, Gaytan MA, Acosta NS (2006) Cotton genetic resources in the western states of Mexico: In situ conservation status and germplasm collection for ex situ preservation. Genet Resour Crop Evol 53(4):653–668

    Google Scholar 

  • Ulloa M (2006) Heritability and correlation assessments for agronomic and fiber traits in an okra upland cotton population. Crop Sci 46:1508–1514

    Google Scholar 

  • USTER AFIS (1997) Advanced Fiber Information System (AFIS), Instruction Manual and software V4.1. Zellweger Uster, Inc, Knoxville, TN 37919, USA

    Google Scholar 

  • Utz HF, Melchinger AE (1994) Comparison of different approaches to interval mapping of quantitative trait loci. In: Van Ooijen JW, Jansen J (eds) Proc 9th Meeting of the EUCARPIA, Section Biometrics in Plant Breeding: Applications of Molecular Markers. CPRO-DLO, Wageningen, The Netherlands, pp 195–204

    Google Scholar 

  • Valderrama C (2004) Fifth year of record consumption. Cotton: review of the world situation (ICAC) 58:10–12

    Google Scholar 

  • Van Ooijen JW, Maliepaard C (1996) MapQTL™ Version 3.0, Sotfware for the calculation of QTL positions on genetic maps. Plant Research International, Wageningen, The Netherlands

    Google Scholar 

  • Vroh Bi I, Maquet A, Baudoin J-P, du Jardin P, Jacquemin JM, Mergeai G (1999) Breeding for “low-gossypol seed and high-gossypol plants” in Upland cotton. Analysis of trispecies hybrids and backcross progenies using AFLPs and mapped RFLPs. Theor Appl Genet 99:1233–1244

    Google Scholar 

  • Walter MA, Spillet DJ, Thomas P, Weissienbach J, Goodfellow PN (1994) A method for constructing radiation hybrid maps of whole genomes. Nat Genet 7:22–28

    PubMed  CAS  Google Scholar 

  • Wang C, Ulloa M, Roberts PA (2005) Identification and mapping of microsatellite markers linked to the root-knot nematode resistance gene rkn1 in Acala NemX (Gossypium hirsutum L.). Theor Appl Genet 112(4):770–777

    PubMed  Google Scholar 

  • Wang K, Song X, Han Z, Guo W, Yu JZ, Sun J, Pan J, Kohel R, Zhang T (2006) Complete assignment of the chromosomes of Gossypium hirsutum L. by translocation and fluorescence in situ hybridization mapping. Theor Appl Genet 113:73–80

    PubMed  CAS  Google Scholar 

  • Wang S, Basten CJ, Zeng ZB (2001–2004) Windows QTL Cartographer 2.0. Dep of Statistics, North Carolina State Univ, Raleigh, NC, USA

    Google Scholar 

  • Wang S, Wang JW, Yu N, Li CH, Lou B, Gou JY, Wang LJ, Chen XY (2004) Control of plant trichome development by a cotton fiber MYB gene. Plant Cell 16:2323–2334

    PubMed  CAS  Google Scholar 

  • Ware JO (1950) Origin, rise, and development of American Upland cotton varieties and their status at present. Mimeo Publication, University of Arkansas, College of Agriculture, Agric Exp Sta, Fayetteville, AR, USA

    Google Scholar 

  • Ware JO (1951) Origin, rise and development of American Upland cotton varieties and their status at present. University of Arkansas, Fayetteville, Fayetteville, AR, USA

    Google Scholar 

  • Wendel JF (1989) New World tetraploid cottons contain Old World cytoplasm. Proc Natl Acad Sci USA 86:4132–4136

    PubMed  CAS  Google Scholar 

  • Wendel JF, Percy RG (1990) Allozyme diversity and introgression in the Galapagos Islands endemic Gossypium darwinii and its relationship to continental G. barbadense. Biochem Syst Ecol 18:517–528

    Google Scholar 

  • Wendel JF, Albert VA (1992) Phylogenetics of the cotton genus (Gossypium): Character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications. Syst Bot 17:115–143

    Google Scholar 

  • Wendel JF, Schnabel A, Seelanan T (1995) An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Mol Phylogenet Evol 4:298–313

    PubMed  CAS  Google Scholar 

  • Wendel JF, Cronn RC (2003) Polyploidy and the evolutionary history of cotton. Adv Agron 78:139–186

    Google Scholar 

  • Wendel JF, Brubaker CL, Percival AE (1992) Genetic diversity in Gossypium hirsutum and the origin of Upland cotton. Am J Bot 79:291–1310

    Google Scholar 

  • Wendel JF, Olson PD, Stewart JM (1989) Genetic diversity, introgression, and independent domestication of Old World cultivated cottons. Am J Bot 76:795–1806

    Google Scholar 

  • Wilkins TA, Jernstedt JA (1999) Molecular genetics of developing cotton fibers. In: Basra AS (ed) Cotton Fibers. Haworth Press, New York, USA, pp 231–267

    Google Scholar 

  • Wright R, Thaxton P, El-Zik K, Peterson A (1998) D-subgenome bias of Xcm resistance genes in tetraploid Gossypium (cotton) suggest that polyploidy formation has created novel avenues for evolution. Genetics 149:1978–1996

    Google Scholar 

  • Wright R, Thaxton P, Peterson AH, El-Zik K (1999) Molecular mapping of genes affecting pubescence of cotton. J Hered 90:215–219

    CAS  Google Scholar 

  • Wu CA, Yang GD, Meng QW, Zhang CC (2004) The cotton GhNHX1 gene encoding a novel putative tonoplast Na+/H+ antiporter plays an important role in salt stress. Plant Cell Physiol 45:600–607

    PubMed  CAS  Google Scholar 

  • Yu J, yong-Ha P, Lazo GR, Kohel JR (1998) Molecularmapping of the cotton genome: QTL analysis of fiber quality properties. Proc Beltwide Cotton Conf, San Diego, CA, USA, 5–9 Jan 1998. Natl Cotton Council Am, Memphis, TN, USA, p 485

    Google Scholar 

  • Yu J, Kohel RJ, Zhang H-B, Dong J-M, Decanini LI (2000) Construction of a cotton BAC library and its applications to gene isolation. In: Plant and Animal Genome VIII Conf, San Diego, CA, USA

    Google Scholar 

  • Zeng Z-B (1992) Correcting the bias of Wright’s estimates of the number of genes affecting a quantitative character: A further improved method. Genetics 131:987–1001

    PubMed  CAS  Google Scholar 

  • Zeng Z-B (1994) Precision mapping of quantitative trait loci. Genetics 136:1457–1468

    PubMed  CAS  Google Scholar 

  • Zhang T, Yuan Y, Yu J, Guo W, Kohel RJ (2003) Molecular tagging of a major QTL for fiber strength in Upland cotton and its marker-assisted selection. Theor Appl Genet 106:262–268

    PubMed  CAS  Google Scholar 

  • Zhang J, Stewart McD (2001) Inheritance and genetic relationships of the D8 and D2−2 restorer genes for cotton cytoplasmic male sterility. Crop Sci 44:1209–1214

    Google Scholar 

  • Zhang J, Stewart McD (2004) Identification of molecular markers linked to the fertility restorer genes for CMS-D8 in cotton (Gossypium hirsutum L.) Crop Sci 44:1209–1217

    CAS  Google Scholar 

  • Zhang HM, Liu JY (2005) Molecular cloning and characterization of a beta-galactosidase gene expressed preferentially in cotton fibers. J Integr Plant Biol 47(2):223–232

    CAS  Google Scholar 

  • Zhang JF, Stewart JM, Wang TH (2005) Linkage analysis between gametophytic restorer Rf(2) gene and genetic markers in cotton. Crop Sci 45:147–156

    Google Scholar 

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Ulloa, M., Brubaker, C., Chee, P. (2007). Cotton. In: Kole, C. (eds) Technical Crops. Genome Mapping and Molecular Breeding in Plants, vol 6. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-34538-1_1

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