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Developing SBML Beyond Level 2: Proposals for Development

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Computational Methods in Systems Biology (CMSB 2004)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 3082))

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Abstract

The Systems Biology Markup Language (SBML) is an XML-based exchange format for computational models of biochemical networks. SBML Level 2, whose definition was established in June 2003, includes several enhancements to the original Level 1. This paper includes a brief overview of Level 2. Several proposals are under development to extend SBML to create Level 3. These include diagrams, 2-D and 3-D spatial characteristics, arrays, model composition and multi-component chemical species. This paper describes the current proposals for the last two features.

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Finney, A. (2005). Developing SBML Beyond Level 2: Proposals for Development. In: Danos, V., Schachter, V. (eds) Computational Methods in Systems Biology. CMSB 2004. Lecture Notes in Computer Science(), vol 3082. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-25974-9_21

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  • DOI: https://doi.org/10.1007/978-3-540-25974-9_21

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-25375-4

  • Online ISBN: 978-3-540-25974-9

  • eBook Packages: Computer ScienceComputer Science (R0)

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