Skip to main content

Deep Data Analytics in Structural and Functional Imaging of Nanoscale Materials

  • Chapter
  • First Online:
Book cover Materials Discovery and Design

Part of the book series: Springer Series in Materials Science ((SSMATERIALS,volume 280))

Abstract

Recent advances in scanning probe microscopy and scanning transmission electron microscopy have opened unprecedented opportunities in probing the materials structural parameters and electronic properties in real space on a picometre-scale. At the same time, the ability of modern day microscopes to quickly produce large, high-resolution datasets has created a challenge for rapid physics-guided analysis of data that typically contain several hundreds to several thousand atomic or molecular units per image. Here it is demonstrated how the advanced statistical analysis and machine learning techniques can be used for extracting relevant physical and chemical information from microscope data on multiple functional materials. Specifically, the following three case studies are discussed (i) application of a combination of convolutional neural network and Markov model for analyzing positional and orientational order in molecular self-assembly; (ii) a combination of sliding window fast Fourier transform, Pearson correlation matrix and canonical correlation analysis methods to study the relationships between lattice distortions and electron scattering patterns in graphene; (iii) application of a non-negative matrix factorization with physics-based constraints and Moran’s analysis of spatial associations to extracting electronic responses linked to different types of structural domains from multi-modal imaging datasets on iron-based superconductors. The approaches demonstrated here are universal in nature and can be applied to a variety of microscopic measurements on different materials.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. T. Le, V.C. Epa, F.R. Burden, D.A. Winkler, Chem. Rev. 112(5), 2889–2919 (2012)

    Article  Google Scholar 

  2. O. Isayev, D. Fourches, E.N. Muratov, C. Oses, K. Rasch, A. Tropsha, S. Curtarolo, Chem. Mater. 27(3), 735–743 (2015)

    Article  Google Scholar 

  3. G. Xu, J. Wen, C. Stock, P.M. Gehring, Nat. Mater. 7(7), 562–566 (2008)

    Article  ADS  Google Scholar 

  4. K. Gofryk, M. Pan, C. Cantoni, B. Saparov, J.E. Mitchell, A.S. Sefat, Phys. Rev. Lett. 112(4), 047005 (2014)

    Article  ADS  Google Scholar 

  5. O.M. Auslaender, L. Luan, E.W.J. Straver, J.E. Hoffman, N.C. Koshnick, E. Zeldov, D.A. Bonn, R. Liang, W.N. Hardy, K.A. Moler, Nat. Phys. 5(1), 35–39 (2009)

    Article  Google Scholar 

  6. I. Zeljkovic, J.E. Hoffman, Phys. Chem. Chem. Phys. 15(32), 13462–13478 (2013)

    Article  Google Scholar 

  7. M. Daeumling, J.M. Seuntjens, D.C. Larbalestier, Nature 346(6282), 332–335 (1990)

    Article  ADS  Google Scholar 

  8. Y. Zhang, V.W. Brar, C. Girit, A. Zettl, M.F. Crommie, Nat. Phys. 5(10), 722–726 (2009)

    Article  Google Scholar 

  9. J. Martin, N. Akerman, G. Ulbricht, T. Lohmann, J.H. Smet, K. von Klitzing, A. Yacoby, Nat. Phys. 4(2), 144–148 (2008)

    Article  Google Scholar 

  10. K.K. Gomes, A.N. Pasupathy, A. Pushp, S. Ono, Y. Ando, A. Yazdani, Nature 447(7144), 569–572 (2007)

    Article  ADS  Google Scholar 

  11. E. Dagotto, Science 309(5732), 257 (2005)

    Article  ADS  Google Scholar 

  12. S.V. Kalinin, S.J. Pennycook, Nature 515 (2014)

    Google Scholar 

  13. S.V. Kalinin, B.G. Sumpter, R.K. Archibald, Nat. Mater. 14(10), 973–980 (2015)

    Article  ADS  Google Scholar 

  14. D.G. de Oteyza, P. Gorman, Y.-C. Chen, S. Wickenburg, A. Riss, D.J. Mowbray, G. Etkin, Z. Pedramrazi, H.-Z. Tsai, A. Rubio, M.F. Crommie, F.R. Fischer, Science (2013)

    Google Scholar 

  15. Y. Wang, D. Wong, A.V. Shytov, V.W. Brar, S. Choi, Q. Wu, H.-Z. Tsai, W. Regan, A. Zettl, R.K. Kawakami, S.G. Louie, L.S. Levitov, M.F. Crommie, Science (2013)

    Google Scholar 

  16. C.-L. Jia, S.-B. Mi, K. Urban, I. Vrejoiu, M. Alexe, D. Hesse, Nat. Mater. 7(1), 57–61 (2008)

    Article  ADS  Google Scholar 

  17. H.J. Chang, S.V. Kalinin, A.N. Morozovska, M. Huijben, Y.-H. Chu, P. Yu, R. Ramesh, E.A. Eliseev, G.S. Svechnikov, S.J. Pennycook, A.Y. Borisevich, Adv. Mater. 23(21), 2474–2479 (2011)

    Article  Google Scholar 

  18. A. Borisevich, O.S. Ovchinnikov, H.J. Chang, M.P. Oxley, P. Yu, J. Seidel, E.A. Eliseev, A.N. Morozovska, R. Ramesh, S.J. Pennycook, S.V. Kalinin, ACS Nano 4(10), 6071–6079 (2010)

    Article  Google Scholar 

  19. Y.-M. Kim, J. He, M.D. Biegalski, H. Ambaye, V. Lauter, H.M. Christen, S.T. Pantelides, S.J. Pennycook, S.V. Kalinin, A.Y. Borisevich, Nat. Mater. 11(10), 888–894 (2012)

    Article  ADS  Google Scholar 

  20. W.J. Kaiser (ed.), Scanning Tunneling Microscopy (Academic Press, San Diego, 1993), p. ii

    Google Scholar 

  21. H. Sakurai, T. Daiko, T. Hirao, Science 301(5641), 1878 (2003)

    Article  Google Scholar 

  22. S. Fujii, M. Ziatdinov, S. Higashibayashi, H. Sakurai, M. Kiguchi, J. Am. Chem. Soc. 138(37), 12142–12149 (2016)

    Article  Google Scholar 

  23. M. Ziatdinov, A. Maksov, S.V. Kalinin, npj Computational Materials 3, 31 (2017)

    Google Scholar 

  24. S. Jesse, S.V. Kalinin, Nanotechnology 20(8), 085714 (2009)

    Article  ADS  Google Scholar 

  25. I. Goodfellow, Y. Bengio, A. Courville, Deep Learning (MIT Press, 2016)

    MATH  Google Scholar 

  26. D. Stutz, Seminar Report (RWTH Aachen University, 2014)

    Google Scholar 

  27. G.R. Cross, A.K. Jain, IEEE Trans. Pattern Anal. Mach. Intell. PAMI-5(1), 25–39 (1983)

    Article  Google Scholar 

  28. M. Schmidt, http://www.cs.ubc.ca/~schmidtm/Software/UGM.html (2007)

  29. R. Jaafar, C.A. Pignedoli, G. Bussi, K. Aït-Mansour, O. Groening, T. Amaya, T. Hirao, R. Fasel, P. Ruffieux, J. Am. Chem. Soc. 136(39), 13666–13671 (2014)

    Article  Google Scholar 

  30. H. Amara, S. Latil, V. Meunier, P. Lambin, J.C. Charlier, Phys. Rev. B 76(11), 115423 (2007)

    Article  ADS  Google Scholar 

  31. A.A. El-Barbary, R.H. Telling, C.P. Ewels, M.I. Heggie, P.R. Briddon, Phys. Rev. B 68(14), 144107 (2003)

    Article  ADS  Google Scholar 

  32. L. Anselin, Geogr. Anal. 27(2), 93–115 (1995)

    Article  Google Scholar 

  33. L. Vlcek, A.A. Chialvo, J. Chem. Phys. 143(14), 144110 (2015)

    Article  ADS  Google Scholar 

  34. M. Ziatdinov et al., Nanotechnology 27, 495703 (2016)

    Article  Google Scholar 

  35. Y. Ganin, E. Ustinova, H. Ajakan, P. Germain, H. Larochelle, F. Laviolette, M. Marchand, V. Lempitsky, ArXiv e-prints, vol. 1505 (2015)

    Google Scholar 

  36. M. Ziatdinov, S. Fujii, K. Kusakabe, M. Kiguchi, T. Mori, T. Enoki, Phys. Rev. B 89(15), 155405 (2014)

    Article  ADS  Google Scholar 

  37. S. Fujii, T. Enoki, ACS Nano 7(12), 11190–11199 (2013)

    Article  Google Scholar 

  38. P. Ruffieux, M. Melle-Franco, O. Gröning, M. Bielmann, F. Zerbetto, P. Gröning, Phys. Rev. B 71(15), 153403 (2005)

    Article  ADS  Google Scholar 

  39. K.-I. Sakai, K. Takai, K.-I. Fukui, T. Nakanishi, T. Enoki, Phys. Rev. B 81(23), 235417 (2010)

    Article  ADS  Google Scholar 

  40. R.K. Vasudevan, A. Belianinov, A.G. Gianfrancesco, A.P. Baddorf, A. Tselev, S.V. Kalinin, S. Jesse, Appl. Phys. Lett. 106(9), 091601 (2015)

    Article  ADS  Google Scholar 

  41. W.J. Krzanowski, Principles of Multivariate Analysis: A User’s Perspective (Oxford University Press, Inc., 1988)

    Google Scholar 

  42. P.R. Wallace, Phys. Rev. 71(9), 622–634 (1947)

    Article  ADS  Google Scholar 

  43. V.M. Pereira, A.H. Castro Neto, N.M.R. Peres, Phys. Rev. B 80(4), 045401 (2009)

    Article  ADS  Google Scholar 

  44. R.M. Ribeiro, M.P. Vitor, N.M.R. Peres, P.R. Briddon, A.H.C. Neto, New J. Phys. 11(11), 115002 (2009)

    Article  ADS  Google Scholar 

  45. V.J. Surya, K. Iyakutti, H. Mizuseki, Y. Kawazoe, Comput. Mater. Sci. 65, 144–148 (2012)

    Article  Google Scholar 

  46. S. Fujii, T. Enoki, J. Am. Chem. Soc. 132(29), 10034–10041 (2010)

    Article  Google Scholar 

  47. V.V. Shunaev, O.E. Glukhova, J. Phys. Chem. C 120(7), 4145–4149 (2016)

    Article  Google Scholar 

  48. J. Ito, J. Nakamura, A. Natori, J. Appl. Phys. 103(11), 113712 (2008)

    Article  ADS  Google Scholar 

  49. K. Fukumizu, F.R. Bach, A. Gretton, J. Mach. Learn. Res. 8, 361–383 (2007)

    MathSciNet  Google Scholar 

  50. M. Ziatdinov, A. Maksov, L. Li, A.S. Sefat, P. Maksymovych, S.V. Kalinin, Nanotechnology 27(47), 475706 (2016)

    Article  ADS  Google Scholar 

  51. L. Li, H. Cao, M.A. McGuire, J.S. Kim, G.R. Stewart, A.S. Sefat, Phys. Rev. B 92(9), 094504 (2015)

    Article  ADS  Google Scholar 

  52. D.D. Lee, H.S. Seung, Nature 401(6755), 788–791 (1999)

    Article  ADS  Google Scholar 

  53. Y. Li, A. Ngom, Source Code Biol. Med. 8(1), 10 (2013)

    Article  Google Scholar 

  54. M. Varela, J. Gazquez, S.J. Pennycook, MRS Bull. 37(1), 29–35 (2012)

    Article  Google Scholar 

  55. O. Bunk, M. Bech, T.H. Jensen, R. Feidenhans’l, T. Binderup, A. Menzel, F. Pfeiffer, New J. Phys. 11(12), 123016 (2009)

    Article  ADS  Google Scholar 

Download references

Acknowledgements

This research was sponsored by the Division of Materials Sciences and Engineering, Office of Science, Basic Energy Sciences, US Department of Energy (MZ and SVK). Part of research was conducted at the Center for Nanophase Materials Sciences, which is a DOE Office of Science User Facility.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Maxim Ziatdinov .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Ziatdinov, M., Maksov, A., Kalinin, S.V. (2018). Deep Data Analytics in Structural and Functional Imaging of Nanoscale Materials. In: Lookman, T., Eidenbenz, S., Alexander, F., Barnes, C. (eds) Materials Discovery and Design. Springer Series in Materials Science, vol 280. Springer, Cham. https://doi.org/10.1007/978-3-319-99465-9_5

Download citation

Publish with us

Policies and ethics