Abstract
Castor bean is considered an economically important plant species within the Euphorbiaceae family from a number of industrial perspectives. Large-scale cultivation has increased the incidence of various biotic stresses. Diseases such as leaf spot, leaf blight, seedling blight, powdery mildew, and virus infections have been reported in the major growing regions, which has caused significant global yield losses. Genomic and transcriptomic analyses of the castor bean genome have led to the identification of nearly 170 predicted disease resistance genes, including members of the NBS-LRR family, along with over 300 defense-response-associated transcription factors. Furthermore, genetic markers linked to disease resistance genes have also been cataloged and comparative genomics has uncovered common molecular descriptors associated with disease resistance in castor bean and other important members of the Euphorbiaceae family. Resistance genes that are common in Euphorbiaceae can be leveraged for engineering biotic stress tolerance in castor bean. It is anticipated that emerging engineering techniques such as CRISPR/Cas9-based genome editing will enable the enhancement of disease resistance in castor bean. Modern biotechnological approaches and advanced genomic and other “omic” technologies will pave the way to counter disease prevalence and to develop resistance strategies to achieve castor bean’s full-yield potential.
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References
Anjani K (2010) Pattern of genetic diversity among Fusarium wilt resistant castor germplasm accessions (Ricinus communis L.). Elect J Plant Breed 1(2):182–187
Arafa RA, Soliman NEK, Moussa OM, Kamel SM, Shirasawa K (2018) Characterization of Egyptian Phytophthora infestans population using simple sequence repeat markers. J Gen Plant Pathol 84:104–107
Bisgrove SR, Simonich MT, Smith NM, Sattler A, Innes RW (1994) A disease resistance gene in Arabidopsis with specificity for two different pathogen avirulence genes. Plant Cell 6:927–933
Brueggeman R, Rostoks N, Kudrna D, Kolian A, Han F, Chen J, Druka A, Steffenson B, Kleinhofs A (2002) The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases. Proc Natl Acad Sci USA 99:9328–9333
Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J et al (2010) Draft genome sequence of the oilseed species Ricinus communis. Nat Biotechnol 28:951–956
Chauhan RS, Sood A (2013) Comparative genomics in Euphorbiaceae. In: Bahadur B, Sujatha M, Carels N (eds) Jatropha: challenges for a new energy crop, vol 2. Springer, New York, pp 351–374
Chen TZ, Lv YD, Zhao TM, Li N, Yang Y, Yu W et al (2013) Comparative transcriptome profiling of a resistant vs susceptible tomato (Solanum lycopersicum) cultivar in response to infection by tomato yellow leaf curl virus. PLoS ONE 8:e80816
Dangl JL, Jones JD (2001) Plant pathogens and integrated defence responses to infection. Nature 14;411(6839):826–833
Deslandes L, Olivier J, Theulieres F, Hirsch J, Feng DX, Bittner-Eddy P, Beynon J, Marco Y (2002) Resistance to Ralstonia solanacearum in Arabidopsis thaliana is conferred by the recessive RRS1-R gene, a member of a novel family of resistance genes. Proc Natl Acad Sci USA 99:2404–2409
DeYoung BJ, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol 7(12):1243–1249
Dhingani RM, Tomar RS, Parakhia MV, Patel SV, Golakiya BA (2012) Analysis of genetic diversity among different Ricinus communis genotypes for macrophomina root rot through RAPD and microsatellite markers. Int J Plant Prot 5:1–7
Dracatos PM, Cogan NOI, Sawbridge TI, Gendall AR, Smith KF, Spangenberg GC, Forster JW (2009) Molecular characterisation and genetic mapping of candidate genes for qualitative disease resistance in perennial ryegrass (Lolium perenne L.). BMC Plant Biol 9:62
Fristensky B, Horovitz D, Hadwiger L (1988) cDNA sequences for pea disease resistance response genes. Plant Mol Biol 11:713–715
Gao L, Cao Y, Xia Z, Jiang G, Liu G, Zhang W, Zhai W (2013) Do transgenesis and marker-assisted backcross breeding produce substantially equivalent plants?—a comparative study of transgenic and backcross rice carrying bacterial blight resistant gene Xa21. BMC Genom 14:738
Gedil M, Kumar M, Igwe D (2012) Isolation and characterization of resistant gene analogs in cassava, wild Manihot species, and castor bean (Ricinus communis). Afr J Biotechnol 11:15111–15123
Joosten M, de Wit P (1999) The tomato-Cladosporium fulvum interaction: a versatile experimental system to study plant–pathogen interactions. Annu Rev Phytopathol 37:335–367
Joyeux A, Fortin MG, Mayerhofer R, Good AG (1999) Genetic mapping of plant disease resistance gene homologues using a minimal Brassica napus L. population. Genome 42:735–743
Kawchuk LM, Hachey J, Lynch DR, Kulcsar F, van Rooijen G, Waterer DR, Robertson A, Kokko E, Byers R, Howard RJ, Fischer R, Prufer D (2001) Tomato ve disease-resistance genes encode cell surface-like receptors. Proc Natl Acad Sci USA 98:6511–6515
Kayondo SI, Carpio DPD, Lozano R, Ozimati A, Wolfe MD, Baguma Y, Gracen V, Samuel O, Ferguson M, Kawuki R, Jannink JL (2018) Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta. Sci Rep 8:1549
Lau NS, Makita Y, Kawashima M, Taylor TD, Kondo S, Othman AS, Shu-Chien AC, Matsui M (2016) The rubber tree genome shows expansion of gene family associated with rubber biosynthesis. Sci Rep 6:28594
Lozano R, Hamblin MT, Prochnik S, Jannink JL (2015) Identification and distribution of the NBS-LRR gene family in the cassava genome. BMC Genom 16:1–14
Mackey D, Belkhadir Y, Alonso JM, Ecker JR, Dangl JL (2003) Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell 112:379–389
Marone D, Russo MA, Laidò G, Leonardis AMD, Mastrangelo AM (2013) Plant nucleotide binding site–leucine-rich repeat (NBS-LRR) genes: active guardians in host defense responses. Int J Mol Sci 14:7302–7326
Martin GB, Bogdanove AJ, Sessa G (2003) Understanding the functions of plant disease resistance proteins. Annu Rev Plant Biol 54:23–61
McHale L, Tan X, Koehl P, Michelmore RW (2006) Plant NBS-LRR proteins: adaptable guards. Genome Biol 7:212
Mirhosseini HA, Nasrollah-Nejad S (2017) First report of cucumber mosaic virus infecting Ricinus communis in India. Plant Dis 101(12):2154
Mirzaee MR, Khodaparast MA, Mohseni M, Ramazani SHR, Soltani-Najafabadi M (2011) First record of powdery mildew of castor-oil plant (Ricinus communis) caused by the anamorphic stage of Leveillula taurica in Iran. Austral Plant Dis Notes 6:36–38
Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Hiroshi E, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y (2013) Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens. PLoS ONE 8(2):e55954
Neumann K, Kobiljski B, Denčić S, Varshney RK, Börner A (2011) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Mol Breed 27:37–58
Parker JE, Coleman MJ, Szabo V, Frost LN, Schmidt R, van der Biezen EA, Moores T, Dean C, Daniels MJ, Jones JDG (1997) The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the toll and interleukin-1 receptors with N and L6. Plant Cell 9:879–894
Parrella G, De Stradis A, Vovlas C (2008) First report of olive latent virus 2 in wild castor bean (Ricinus communis L.) in Italy. Plant Pathol 57:392
Raj SK, Snehi SK, Gautam KK, Khan MS (2010) First report of association of cucumber mosaic virus with blister and leaf distortion of castor bean (Ricinus communis L.) in India. Phytoparasitica 38:283–289
Reddy BBV, Prasanthi L, Sivaprasad Y, Sujitha A, Krishna TG (2014) First report of tobacco streak virus in castor bean. J Plant Pathol 96:431–439
Reddy RN, Sujatha M, Reddy AV, Reddy AP (2011) Inheritance and molecular mapping of wilt resistance gene (s) in castor (Ricinus communis L.). Intl J Plant Breed 5:84–87
Sabet KA (1959) Bacterial leaf blight disease of castor. Ann Appl Biol 47:49–55
Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M, Kawashima K, Minami C, Muraki A, Nakazaki N et al (2011) Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res 18:65–76
Seo YS, Rojas MR, Lee JY, Lee SW, Jeon JS, Ronald P, Lucas WJ, Gilbertson RL (2006) A viral resistance gene from common bean functions across plant families and is upregulated in a non-virus-specific manner. Proc Natl Acad Sci USA 103:11856–11861
Sharma A (2011) Development of genome resources and their utilization in Jatropha through comparative genomics with castor bean. Ph.D. thesis, Jaypee University of Information Technology, Waknaghat
Simões KS, Silva SA, Machado EL, Brasileiro HS (2017) Development of TRAP primers for Ricinus communis L. Genet Mol Res 16:1–13
Singh M, Chaudhuri I, Mandal SK, Chaudhuri RK (2011) Development of RAPD markers linked to fusarium wilt resistance gene in castor bean (Ricinus communis L.). Genet Eng Biotech J 28:1–9
Soares DJ (2012) Gray mold of castor: a review. In: Cumagun CJR (ed) Plant Pathology. InTech, Rijeka, pp 219–240
Song X, Li Y, Hou X (2013) Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis). BMC Genom 14:573
Sood A, Chauhan RS (2017) Comparative NGS transcriptomics unravels molecular components associated with mosaic virus infection in a bioenergy plant species, Jatropha curcas L. Bioenergy Res 10:129–145
Sood A, Jaiswal V, Chanumolu SK, Malhotra N, Pal T, Chauhan RS (2014) Mining whole genomes and transcriptomes of Jatropha (Jatropha curcas) and castor bean (Ricinus communis) for NBS-LRR genes and defense response associated transcription factors. Mol Biol Rep 41(11):7683–7695
Souza AGC, Maffia LA (2011) First report of Cercospora coffeicola causing cercospora leaf spot of castor beans in Brazil. Plant Dis 95(11):1479
Tarr DE, Alexander HM (2009) TIR-NBS-LRR genes are rare in monocots: evidence from diverse monocot orders. BMC Res Notes 2:197
Uchida JY, Aragaki M (1988) Seedling blight of castor bean in Hawaii caused by Phytophthora palmivora. Plant Dis 72:1994
Vahunia B, Singh P, Patel NY, Rathava A (2017) Management of fusarium wilt of castor (Ricinus communis L.) caused by Fusarium oxysporum f. sp. ricini with antagonist, botanical extract and pot experiment. Intl J Curr Microbiol App Sci 6(9):390–395
van der Biezen EA, Jones JDG (1998) The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 8:226–227
van Ooijen G, van den Burg HA, Cornelissen BJ, Takken FL (2007) Structure and function of resistance proteins in solanaceous plants. Annu Rev Phytopathol 45:43–72
Voitsik AM, Muench S, Deising HB, Voll LM (2013) Two recently duplicated maize NAC transcription factor paralogs are induced in response to colletotrichum graminicola infection. BMC Plant Biol 13:85
Wang GL, Ruan DL, Song WY, Sideris S, Chen LL, Pi LY, Zhang SP, Zhang Z, Fauquet C, Gaut BS, Whalen MC, Ronald PC (1998) Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell 10:765–779
Wang HZ, Zhao PJ, Xu JC et al (2003) Virus resistance in transgenic watermelon plants containing a WMV-2 coat protein gene. Acta Genet Sin 30:70–75
Wolfe MD, Rabbi IY, Egesi C, Hamblin M, Kawuki R, Kulakow P, Lozano R, Carpio DPD, Ramu P, Jannink JL (2016) Genomewide association and prediction reveals genetic architecture of cassava mosaic disease resistance and prospects for rapid genetic improvement. Plant Genome 9:1–13
Wu P, Zhou C, Cheng S, Wu Z, Lu W, Han J, Chen Y, Chen Y, Ni P, Wang Y, Xu X, Huang Y, Song C, Wang Z, Shi N, Zhang X, Fang X, Yang Q, Jiang H, Chen Y, Li M, Chen F, Wang J, Wu G (2015) Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant. Plant J 81(5):810–821
Xiao S, Ellwood S, Calis O, Patrick E, Li T, Coleman M, Turner JG (2001) Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8. Science 291:118–120
Xu W, Li F, Ling L, Liu A (2013) Genomewide survey and expression profiles of the AP2/ERF family in castor bean (Ricinus communis L.). BMC Genom 14:785
Zhang C, Chen H, Cai T, Deng Y, Zhuang R, Zhang N, Zeng Y, Zheng Y, Tang R, Pan R, Zhuang W (2016) Overexpression of a novel peanut NBS-LRR gene AhRRS5 enhances disease resistance to Ralstonia solanacearum in tobacco. Plant Biotechnol J 15(1):39–55
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Sood, A., Chauhan, R.S. (2018). Genomics of Disease Resistance in Castor Bean. In: Kole, C., Rabinowicz, P. (eds) The Castor Bean Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-319-97280-0_6
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DOI: https://doi.org/10.1007/978-3-319-97280-0_6
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