Abstract
Capsicum is one of the most important vegetable crops of the family Solanaceae and is widely used as spice due to its pungent nature. Besides, Capsicum fruit rich in metabolites and vitamins; and also has anticancerous property, which further increases the importance of this crop. However, Capsicum crop is highly affected by abiotic/biotic stresses such as drought, heat, cold, salinity, and pathogens. To overcome these stresses, plants adapted several mechanisms such as the production of osmoprotectant, proline, galactinol and raffinose, and the reduction of reactive oxygen species. Autophagy also plays an important role to provide tolerance against stresses through degradation of toxins. Among the others, transcription factors and plasma membrane intrinsic proteins, and plant endophytes are found to be involved in regulating stress tolerance mechanism. Furthermore, in Capsicum genome, a number of genes and quantitative trait loci (QTLs) involved in stress tolerance mechanism have been identified. In this chapter, a detail compilation of important molecular mechanisms and associated genes/QTLs involved toward imparting abiotic and biotic stress tolerance in Capsicum genome is made.
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References
Abe H, Yamaguchi-Shinozaki K, Urao T, Tiwasaki T, Hosokawa D, Shinozaki K (1997) Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid regulated gene expression. Plant Cell 9:1859–1868
Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15:63–78
Aidoo MK, Sherman T, Lazarovitch N, Fait A, Rachmilevitch S (2017) A bell pepper cultivar tolerant to chilling enhanced nitrogen allocation and stress-related metabolite accumulation in the roots in response to low root-zone temperature. Physiol Plant 161:196–210
Ali M, Luo D-X, Khan A, Haq S ul, Gai W-X, Zhang H-X, Cheng G-X, Muhammad I, Gong Z-H (2018) Classification and genome-wide analysis of chitin-binding proteins gene family in pepper (Capsicum annuum L.) and transcriptional regulation to Phytophthora capsici, abiotic stresses and hormonal applications. Intl J Mol Sci 19. https://doi.org/10.3390/ijms19082216
Anderson JP, Badruzsaufari E, Schenk PM, Manners JM, Desmond OJ, Ehlert C, Maclean DJ, Ebert PR, Kazan K (2004) Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in Arabidopsis. Plant Cell 16:3460–3479
Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 55:373–399
Asselbergh B, Achuo AE, Hofte M, Van Gijsegem F (2008) Abscisic acid deficiency leads to rapid activation of tomato defence responses upon infection with Erwinia chrysanthemi. Mol Plant Pathol 9:11–24
Atkinson NJ, Urwin PE (2012) The interaction of plant biotic and abiotic stresses: from genes to the field. J Exp Bot 63:3523–3544
Audenaert K, De Meyer GB, Hofte MM (2002) Abscisic acid determines basal susceptibility of tomato to Botrytis cinerea and suppresses salicylic acid-dependent signaling mechanisms. Plant Physiol 128:491–501
Baek W, Lim S, Lee SC (2016) Identification and functional characterization of the pepper CaDRT1 gene involved in the ABA-mediated drought stress response. Plant Mol Biol 91:149–160
Banerjee A, Dutta R, Roy S, Ngachan SV (2014) First report of chilli veinal mottle virus in Naga chilli (Capsicum chinense) in Meghalaya, India. Virus Dis 25:142–143
Barbary A, Djian-Caporalino C, Marteu N, Fazari A, Caromel B, Castagnone-Sereno P, Palloix A (2016) Plant genetic background increasing the efficiency and durability of major resistance genes to root-knot nematodes can be resolved into a few resistance QTLs. Front Plant Sci 7:632
Baxter A, Mittler R, Suzuki N (2014) ROS as key players in plant stress signalling. J Exp Bot 65:1229–1240
Ben-Chaim A, Grube RC, Lapidot M, Jahn M, Paran I (2001) Identification of quantitative trait loci associated with resistance to cucumber mosaic virus in Capsicum annuum. Theor Appl Genet 102:1213–1220
Beyeler M, Keel C, Michaux P, Haas D (1999) Enhanced production of indole-3-acetic acid by a genetically modified strain of Pseudomonas fluorescens CHA0 affects root growth of cucumber, but does not improve protection of the plant against Pythium root rot. FEMS Microbiol Ecol 28:225–233
Caranta C, Pflieger S, Lefebvre V, Daubèze AM, Thabuis A, Palloix A (2002) QTLs involved in the restriction of cucumber mosaic virus (CMV) long-distance movement in pepper. Theor Appl Genet 104:586–591
Chaumont F, Barrieu F, Wojcik E, Chrispeels MJ, Jung R (2001) Aquaporins constitute a large and highly divergent protein family in maize. Plant Physiol 125:1206–1215
Chen RG, Li HX, Zhang LY, Zhang JH, Xiao JH, Ye ZB (2007) CaMi, a root-knot nematode resistance gene from hot pepper (Capsicum annuum L.) confers nematode resistance in tomato. Plant Cell Rep 26:895–905
Chen R, Guo W, Yin Y, Gong Z-H (2014) A novel F-Box protein CaF-box is involved in responses to plant hormones and abiotic stress in pepper (Capsicum annuum L.). Intl J Mol Sci 15:2413–2430
Cheng Y, Ahammed GJ, Yu J, Yao Z, Ruan M, Ye Q, Li Z, Wang R, Feng K, Zhou G, Yang Y, Diao W, Wan H (2016) Putative WRKYs associated with regulation of fruit ripening revealed by detailed expression analysis of the WRKY gene family in pepper. Sci Rep 6:39000
Chhapekar SS, Jaiswal V, Ahmad I, Gaur R, Ramchiary N (2018) Progress and prospects in capsicum breeding for biotic and abiotic stresses. In: Vats S (ed) Biotic and abiotic stress tolerance in plants. Springer Nature, Singapore, pp 279–322
Cho SK, Chung HS, Ryu MY, Park MJ, Lee MM, Bahk Y-Y, Kim J, Pai HS, Kim WT (2006a) Heterologous expression and molecular and cellular characterization of CaPUB1 encoding a hot pepper U-Box E3 ubiquitin ligase homolog. Plant Physiol 142:1664–1682
Cho SK, Kim JE, Park J-A, Eom TJ, Kim WT (2006b) Constitutive expression of abiotic stress-inducible hot pepper CaXTH3, which encodes a xyloglucan endotransglucosylase/hydrolase homolog, improves drought and salt tolerance in transgenic Arabidopsis plants. FEBS Lett 580:3136–3144
Choi HW, Hwang BK (2012) The pepper extracellular peroxidase CaPO2 is required for salt, drought and oxidative stress tolerance as well as resistance to fungal pathogens. Planta 235:1369–1382
Choi HW, Kim YJ, Lee SC, Hong JK, Hwang BK (2007) Hydrogen peroxide generation by the pepper extracellular peroxidase CaPO2 activates local and systemic cell death and defence response to bacterial pathogens. Plant Physiol 145:890–904
Choi JY, Seo YS, Kim SJ, Kim WT, Shin JS (2011) Constitutive expression of CaXTH3, a hot pepper xyloglucan endotransglucosylase/hydrolase, enhanced tolerance to salt and drought stresses without phenotypic defects in tomato plants (Solanum lycopersicum cv. Dotaerang). Plant Cell Rep 30:867–877
Czarny JC, Grichko VP, Glick BR (2006) Genetic modulation of ethylene biosynthesis and signaling in plants. Biotechnol Adv 24:410–419
Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, Coutu J, Shulaev V, Schlauch K, Mittler R (2005) CYTOSOLIC ASCORBATE PEROXIDASE 1 is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 17:268–281
Diao W, Snyder JC, Wang S, Liu J, Pan B, Guo G, Ge W, Dawood MHSA (2018) Genome-wide analyses of the NAC transcription factor gene family in pepper (Capsicum annuum L.): chromosome location, phylogeny, structure, expression patterns, cis-elements in the promoter, and interaction network. Intl J Mol Sci 19. https://doi.org/10.3390/ijms19041028
Djian-Caporalino C, Pijarowski L, Januel A, Lefebvre V, Daubeze A, Palloix A, Dalmasso A, Abad P (1999) Spectrum of resistance to root-knot nematodes and inheritance of heat stable resistance in pepper (Capsicum annuum L.) Theor Appl Genet 99:496–502
Djian-Caporalino C, Pijarowski L, Fazari A et al (2001) High-resolution genetic mapping of the pepper (Capsicum annuum L.) resistance loci Me3 and Me4 conferring heat-stable resistance to root-knot nematodes (Meloidogyne Spp.) Theor Appl Genet 103:592–600
Djian-Caporalino C, Fazari A, Arguel MJ et al (2007) Root-knot nematode (Meloidogyne spp.) Me resistance genes in pepper (Capsicum annuum L.) are clustered on the P9 chromosome. Theor Appl Genet 114:473–486
Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L (2010) MYB transcription factors in Arabidopsis. Trend Plant Sci 15:573–581
Fazari A, PalloixA WL, Hua YM, Sage-Palloix AM, Zhang BX, Djian-Caporalino C (2012) The root-knot nematode resistance N-gene co-localizes in the Me-genes cluster on the pepper (Capsicum annuum L.) P9 chromosome. Plant Breed 131:665–673
Fonseca S, Chico JM, Solano R (2009) The jasmonate pathway: the ligand, the receptor and the core signalling module. Curr Opin Plant Biol 12:539–547
Forrest KL, Bhave M (2007) Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype. Funct Integr Genom 7:263
Fujita M, Fujita Y, Maruyama K, Seki M, Hiratsu K, Ohme-Takagi M, Tran LSP, Yamaguchi-Shinozaki K, Shinozaki K (2004) A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J 39:863–876
Fujita M, Futija Y, Noutoshi Y, Takahashi F, Narusaka Y, Yamaguchi-Shinozaki K, Shinozaki K (2006) Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. Curr Opin Plant Biol 9:436–442
Gahlaut V, Jaiswal V, Kumar A, Gupta PK (2016) Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.). Theor Appl Genet 129:2019–2042
Galon Y, Finkler A, Fromm H (2010) Calcium-regulated transcription in plants. Mol Plant 3:653–669
Gao F, Chang F, Shen J, Shi F, Xie L, Zhan J (2014) Complete genome analysis of a novel recombinant isolate of potato virus Y from China. Arch Virol 159:3439–3442
Guo W-L, Wang S-B, Chen R-G, Chen B-H, Du X-H, Yin Y-X, Gong Z-H, Zhang Y-Y (2015) Characterization and expression profile of CaNAC2 pepper gene. Front Plant Sci 6:755
Guo G, Wang S, Liu J, Pan B, Diao W, Ge W, Gao C, Snyder JC (2017) Rapid identification of QTLs underlying resistance to cucumber mosaic virus in pepper (Capsicum frutescens). Theor Appl Genet 130:41–52
Gutterson N, Reuber TL (2004) Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr Opin Plant Biol 7:1–7
Hong Truong HT, Kim JH, Cho MC, Chae SY, Lee HE (2013) Identification and development of molecular markers linked to Phytophthora root rot resistance in pepper (Capsicum annuum L.) Eur J Plant Pathol 135:289–297
Hong JK, Choi HW, Hwang IS, Hwang BK (2007) Role of a novel pathogen-induced pepper C3-H-C4 type RING-finger protein gene, CaRFP1, in disease susceptibility and osmotic stress tolerance. Plant Mol Biol 63:571–588
Hong JK, Choi HW, Hwang IS, Kim DS, Kim NH, Choi DS, Kim YJ, Hwang BK (2008) Function of a novel GDSL-type pepper lipase gene, CaGLIP1, in disease susceptibility and abiotic stress tolerance. Planta 227:539–558
Hwang IS, Hwang BK (2010) The pepper 9-Lipoxygenase gene CaLOX1 functions in defense and cell death responses to microbial pathogens. Plant Physiol 152:948–967
Hwang JN, Li J, Liu WY, An SJ, Cho H, Her NH, Yeam I, Kim D, Kang B (2009) Double mutations in eIF4E and eIFiso4E confer recessive resistance to Chilli Veinal mottle virus in pepper. Mol Cells 27:329–336
Ichimura K, Mizoguchi T, Yoshida R, Yuasa T, Shinozaki K (2000) Various abiotic stresses rapidly activate Arabidopsis MAP kinases ATMPK4 and ATMPK6. Plant J 24:655–665
Isbat M, Zeba N, Kim SR, Hong CB (2009) A BAX inhibitor-1 gene in Capsicum annuum is induced under various abiotic stresses and endows multi-tolerance in transgenic tobacco. J Plant Physiol 166:1685–1693
Islam MM, Haque MS, Hossain MK, Hasan MM (2014) Diverse antioxidative effects in Pui vegetable (Basella alba) induced by high temperature stress. Intl J Agron Agri Res 5:135–147
Janska A, Marsik P, Zelenkova S, Ovesna J (2010) Cold stress and acclimation: what is important for metabolic adjustment? Plant Biol 12:395–405
Jiang CJ, Shimono M, Sugano S, Kojima M, Yazawa K, Yoshida R, Inoue H, Hayashi N, Sakakibara H, Takatsuji H (2010) Abscisic acid interacts antagonistically with salicylic acid signalling pathway in rice–Magnaporthe grisea interaction. Mol Plant-Micr Interact 23:791–798
Jing H, Li C, Ma F, Ma J-H, Khan A, Wang X, Zhao L-Y, Gong Z-H, Chen R-G (2016) Genome-wide identification, expression diversification of dehydrin gene family and characterization of CaDHN3 in pepper (Capsicum annuum L.). PLoS ONE 11:e0161073
Jonak C, Okresz L, Bogre L, Hirt H (2002) Complexity, cross talk and integration of plant MAP kinase signaling. Curr Opin Plant Biol 5:415–424
Kang WH, Hoang NH, Yang HB et al (2010) Molecular mapping and characterization of a single dominant gene controlling CMV resistance in peppers (Capsicum annuum L.) Theor Appl Genet 120:1587–1596
Kasuga M, Liu Q, Miura S, Yamaguchi-shinozaki K, Shinozaki K (1999) Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat Biotechnol 17:287–291
Kim DS, Hwang BK (2012) The pepper MLO gene, CaMLO2, is involved in the susceptibility cell-death response and bacterial and oomycete proliferation. Plant J 72:843–855
Kim DS, Hwang BK (2014) An important role of the pepper phenylalanine ammonia-lyase gene (PAL1) in salicylic acid-dependent signalling of the defence response to microbial pathogens. J Exp Bot 65:2295–2306
Kim SH, Hong JK, Lee SC, Sohn KH, Jung HW, Hwang BK (2004) CAZFP1, Cys2/His2-type zinc-finger transcription factor gene functions as a pathogen-induced early-defense gene in Capsicum annuum. Plant Mol Biol 55:883–904
Kim S-Y, Kim Y-C, Lee J-H, Oh S-K, Chung E, Lee S, Lee Y-H, Choi D, Park JM (2005) Identification of a CaRAV1 possessing an AP2/ERF and B3 DNA-binding domain from pepper leaves infected with Xanthomonas axonopodis pv. glycines 8ra by differential display. Biochim Biophys Acta 1729:141–146
Kim H-J, Nahm S-H, Lee H-R, Yoon G-B, Kim K-T, Kang B-C, Choi D, Kweon OY, Cho M-C, Kwon J-K, Han J-H, Kim J-H, Park M, Ahn JH, Choi SH, Her NH, Sung J-H, Kim B-D (2008) BAC-derived markers converted from RFLP linked to Phytophthora capsici resistance in pepper (Capsicum annuum L.). Theor Appl Genet 118:15–27
Kim HJ, Han J-H, Kim S, Lee HR, Shin J-S, Kim J-H, Cho J, Kim YH, Lee HJ, Kim B-D, Choi D (2011) Trichome density of main stem is tightly linked to PepMoV resistance in chili pepper (Capsicum annuum L.). Theor Appl Genet 122:1051–1058
Kim DS, Choi HW, Hwang BK (2014a) Pepper mildew resistance locus O interacts with pepper calmodulin and suppresses Xanthomonas AvrBsT-triggered cell death and defense responses. Planta 240:827–839
Kim JS, Park H-M, Chae S, Lee T-H, Hwang D-J, Oh S-D, Park J-S, Song D-G, Pan C-H, Choi D, Kim Y-H, Nahm BH, Kim Y-K (2014b) A pepper MSRB2 gene confers drought tolerance in rice through the protection of chloroplast-targeted genes. PLoS ONE 9:e90588
Kirsten R, Jaglo-ottosen SJ, Gilmour DG, Zarka OS, Thomashow MF (1998) Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 280:104–106
Koga H, Dohi K, Mori M (2004) Abscisic acid and low temperatures suppress the whole plant-specific resistance reaction of rice plants to the infection of Magnaporthe grisea. Physiol Mol Plant Pathol 65:3–9
Krasensky J, Jonak C (2012) Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks. J Exp Bot 63:1593–1608
Kusajima M, Yasuda M, Kawashima A, Nojiri H, Yamane H, Nakajima M, Akutsu K, Nakashita H (2010) Suppressive effect of abscisic acid on systemic acquired resistance in tobacco plants. J Gen Plant Pathol 76:161–167
Lee SC, Choi HW, Hwang IS, Choi DS, Hwang BK (2006) Functional roles of the pepper pathogen-induced bZIP transcription factor, CAbZIP1, in enhanced resistance to pathogen infection and environmental stresses. Planta 224:1209–1225
Lee HK, Cho SK, Son O, Xu Z, Hwang I, Kim WT (2009) Drought stress-induced Rma1H1, a RING membrane-anchor E3 ubiquitin ligase homolog, regulates aquaporin levels via ubiquitination in transgenic Arabidopsis plants. Plant Cell 21:622–641
Lee SC, Choi DS, Hwang IS, Hwang BK (2010) The pepper oxidoreductase CaOXR1 interacts with the transcription factor CaRAV1 and is required for salt and osmotic stress tolerance. Plant Mol Biol 73:409–424
Lefebvre V, Daubèze A-M, Rouppe van der Voort J, Peleman J, Bardin M, Palloix A (2003) QTLs for resistance to powdery mildew in pepper under natural and artificial infections. Theor Appl Genet 107:661–666
Li N, Yin Y, Wang F, Yao M (2018) Construction of a high-density genetic map and identification of QTLs for cucumber mosaic virus resistance in pepper (Capsicum annuum L.) using specific length amplified fragment sequencing (SLAF-seq). Breed Sci 68:233–241
Lim CW, Lee SC (2014) Functional roles of the pepper MLO protein gene, CaMLO2, in abscisic acid signaling and drought sensitivity. Plant Mol Biol 85:1–10
Lim CW, Han SW, Hwang IS, Kim DS, Hwang BK, Lee SC (2015a) The pepper lipoxygenase CaLOX1 plays a role in osmotic, drought and high salinity stress response. Plant Cell Physiol 56:930–942
Lim CW, Hwang BK, Lee SC (2015b) Functional roles of the pepper RING finger protein gene, CaRING1, in abscisic acid signaling and dehydration tolerance. Plant Mol Biol 89:143–156
Liu HX, Zhou XY, Dong N, Liu X, Zhang HY, Zhang ZY (2011) Expression of a wheat MYB gene in transgenic tobacco enhances resistance to Ralstonia solanacearum, and to drought and salt stresses. Funct Integr Genom 11:431–443
Liu W-Y, Kang J-H, Jeong H-S, Choi H-J, Yang H-B, Kim K-T, Choi D, Choi GJ, Jahn M, Kang B-C (2014) Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper. Theor Appl Genet 127:2503–2513
Liu Z, Shi L, Liu Y, Tang Q, Shen L, Yang S, Cai J, Yu H, Wang R, Wen J, Lin Y, Hu J, Liu C, Zhang Y, Mou S, He S (2015) Genome-wide identification and transcriptional expression analysis of mitogen-activated protein kinase and mitogen-activated protein kinase kinase genes in Capsicum annuum. Front Plant Sci 6:780
Mahajan S, Tuteja N 92005) Cold, salinity and drought stresses: an overview. Arch Biochem Biophys 444: 139–58
Maharijaya A, Vosman B, Steenhuis-Broers G, Pelgrom K, Purwito A, Visser RGF, Voorrips RE (2015) QTL mapping of thrips resistance in pepper. Theor Appl Genet 128:1945–1956
Mayak S, Tirosh T, Glick BR (2004) Plant growth-promoting bacteria that confer resistance to water stress in tomatoes and peppers. Plant Sci 166:525–530
Mengiste T, Chen X, Salmeron J, Dietrich R (2003) The BOTRYTIS SUSCEPTIBLE1 gene encodes an R2R3MYB transcription factor protein that is required for biotic and abiotic stress responses in Arabidopsis. Plant Cell 15:2551–2565
Min HJ, Jung YJ, Kang BG, Kim WT (2016) CaPUB1, a hot pepper U-box E3 ubiquitin ligase, confers enhanced cold stress tolerance and decreased drought stress tolerance in transgenic rice (Oryza sativa L.). Mol Cells 39:250–257
Mittler R, Blumwald E (2010) Genetic engineering for modern agriculture: challenges and perspectives. Annu Rev Plant Biol 61:443–462
Mittler R, Vanderauwera S, Suzuki N, Miller G, Tognetti VB, Vandepoele K, Gollery M, Shulaev V, Van Breusegem F (2011) ROS signaling: the new wave? Trends Plant Sci 16:300–309
Mohr PG, Cahill DM (2003) Abscisic acid influences the susceptibility of Arabidopsis thaliana to Pseudomonas syringae pv. tomato and Peronospora parasitica. Funct Plant Biol 30:461–469
Moller IM, Jensen PE, Hansson A (2007) Oxidative modifications to cellular components in plants. Annu Rev Plant Biol 58:459–481
Moon S-J, Han S-Y, Kim D-Y, Yoon IS, Shin D, Byun M-O, Kwon H-B, Kim B-G (2015) Ectopic expression of a hot pepper bZIP-like transcription factor in potato enhances drought tolerance without decreasing tuber yield. Plant Mol Biol 89:421–431
Mou S, Liu Z, Gao F, Yang S, Su M, Shen L, Wu Y, He S (2017) CaHDZ27, a homeodomain leucine zipper i protein, positively regulates the resistance to Ralstonia solanacearum infection in pepper. Mol Plant-Micr Interact https://doi.org/10.1094/MPMI-06-17-0130-R
Muszynski MG, Dam T, Li B, Shirbroun DM, Hou Z, Bruggemann E, Archibald R, Ananiev EV, Danilevskaya ON (2006) Delayed flowering1 encodes a basic leucine zipper protein that mediates floral inductive signals at the shoot apex in maize. Plant Physiol 142:1523–1536
Naegele RP, Ashrafi H, Hill TA, Chin-Wo SR, Van Deynze AE, Hausbeck MK (2014) QTL mapping of fruit rot resistance to the plant pathogen Phytophthora capsici in a recombinant inbred line Capsicum annuum population. Phytopathology 104:479–483
Nakagami H, Pitzschke A, Hirt H (2005) Emerging MAP kinase pathways in plant stress signaling. Trends Plant Sci 10:339–346
Nakashima K, Tran LSP, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki K (2007) Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J 51:617–630
Nuhse TS, Peck SC, Hirt H, Boller T (2000) Microbial elicitors induce activation and dual phosphorylation of the Arabidopsis thaliana MAPK 6. J Biol Chem 275:7521–7526
Oh S-K, Yi SY, Yu SH, Moon JS, Park JM, Choi D (2006) CaWRKY2, a chili pepper transcription factor, is rapidly induced by incompatible plant pathogens. Mol Cells 22:58–64
Oh SK, Baek KH, Seong ES et al (2010) CaMsrB2, pepper methionine sulfoxide reductase B2, is a novel defense regulator against oxidative stress and pathogen attack. Plant Physiol 154:245–261
Park JM, Park CJ, Lee SB, Ham BK, Shin R, Paek KH (2001) Overexpression of the tobacco Tsi1 gene encoding an EREBP/AP2-type transcription factor enhances resistance against pathogen attack and osmotic stress in tobacco. Plant Cell 13:1035–1046
Park C, Lim CW, Baek W, Kim J-H, Lim S, Kim SH, Kim K-N, Lee SC (2017) The pepper WPP domain Protein, CaWDP1, acts as a novel negative regulator of drought stress via ABA signaling. Plant Cell Physiol 58:779–788
Peng XX, Tang XK, Zhou PL, Hu YJ, Deng XB, He Y, Wang HH (2011) Isolation and expression patterns of rice WRKY82 transcription factor gene responsive to both biotic and abiotic stresses. Agri Sci China 10:893–901
Pieterse CMJ, Leon-Reyes A, Van der Ent S, Van Wees SCM (2009) Networking by small-molecule hormones in plant immunity. Nat Chem Biol 5:308–316
Pitzschke A, Schikora A, Hirt H (2009) MAPK cascade signalling networks in plant defence. Curr Opin Plant Biol 12:421–426
Qin L, Mo N, Muhammad T, Liang Y (2018) Genome-Wide Analysis of DCL, AGO, and RDR Gene families in pepper (Capsicum annuum L.). Intl J Mol Sci 19. https://doi.org/10.3390/ijms19041038
Qiu YP, Yu DQ (2009) Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis. Environ Exp Bot 65:35–47
Quirin EA, Ogundiwin EA, Prince JP, Mazourek M, Briggs MO, Chlanda TS, Kim K-T, Falise M, Kang B-C, Jahn MM (2005) Development of sequence characterized amplified region (SCAR) primers for the detection of Phyto. 5.2, a major QTL for resistance to Phytophthora capsici Leon. in pepper. Theor Appl Genet 110:605–612
Reeves G, Monroy-Barbosa A, Bosland PW (2013) A novel Capsicum gene inhibits host-specific disease resistance to Phytophthora capsici. Phytopathology 103:472–478
Rodriguez MCS, Petersen M, Mundy J (2010) Mitogen-activated protein kinase signaling in plants. AnnuRev Plant Biol 61:621–649
Romer P, Jordan T, Lahaye T (2010) Identification and application of a DNA-based marker that is diagnostic for the pepper (Capsicum annuum) bacterial spot resistance gene Bs3. Plant Breed 129:737–740
Rorat T (2006) Plant dehydrins—tissue location, structure and function. Cell Mol Biol Lett 11:536–556
Rubio M, Caranta C, Palloix A (2008) Functional markers for selection of potyvirus resistance alleles at the pvr2-eIF4E locus in pepper using tetra-primer ARMS-PCR. Genome 51:767–771
Ruffel S, Gallois JL, Moury B, Robaglia C, Palloix A, Caranta C (2006) Simultaneous mutations in translation initiation factors eIF4E and eIF(iso)4E are required to prevent pepper veinal mottle virus infection of pepper. J Gen Virol 87:2089–2098
Sanghera GS, Wani SH, Hussain W, Singh NB (2011) Engineering cold stress tolerance in crop plants. Curr Genom 12:30–43
Seo PJ, Park CM (2010) MYB96-mediated abscisic acid signals induce pathogen resistance response by promoting salicylic acid biosynthesis in Arabidopsis. New Phytol 186:471–483
Seo PJ, Lee SB, Suh MC, Park MJ, Go YS, Park CM (2011) The MYB96 transcription factor regulates cuticular wax biosynthesis under drought conditions in Arabidopsis. Plant Cell 23:1138–1152
Seo YS, Choi JY, Kim SJ, Kim EY, Shin JS, Kim WT (2012) Constitutive expression of CaRma1H1, a hot pepper ER-localized RING E3 ubiquitin ligase, increases tolerance to drought and salt stresses in transgenic tomato plants. Plant Cell Rep 31:1659–1665
Seong ES, Wang M-H (2008) A novel CaAbsi1 gene induced by early-abiotic stresses in pepper. BMB Rep 41:86–91
Seong ES, Choi D, Cho HS, Lim CK, Cho HJ, Wang M-H (2007) Characterization of a stress-responsive ankyrin repeat-containing zinc finger protein of Capsicum annuum (CaKR1). J Biochem Mol Biol 40:952–958
Sohn KH, Lee SC, Jung HW, Hong JK, Hwang BK (2006) Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance. Plant Mol Biol 61:897–915
Sun C, Mao SL, Zhang ZH, Palloix A, Wang LH, Zhang BX (2015) Resistances to anthracnose (Colletotrichum acutatum) of Capsicum mature green and ripe fruit are controlled by a major dominant cluster of QTLs on chromosome P5. Sci Hort 181:81–88
Suwor P, Sanitchon J, Thummabenjaone P, Kumar S, Hawongstien ST (2017) Inheritance analysis of anthracnose resistance and marker-assisted selection in introgression populations of chili (Capsicum annuum L.). Sci Hort 220:20–26
Szabala BM, Fudali S, Rorat T (2014) Accumulation of acidic SK3 dehydrins in phloem cells of cold- and drought-stressed plants of the Solanaceae. Planta 239:847–863
Sziderics AH, Rasche F, Trognitz F, Sessitsch A, Wilhelm E (2007) Bacterial endophytes contribute to abiotic stress adaptation in pepper plants (Capsicum annuum L.). Can J Microbiol 53:1195–1202
Takahashi F, Mizoguchi T, Yoshida R, Ichimura K, Shinozaki K (2011) Calmodulin-dependent activation of MAP kinase for ROS homeostasis in Arabidopsis. Molr Cell 41:649–660
Tamisier L, Rousseau E, Barraillé S, Nemouchi G, Szadkowski M, Mailleret L, Grognard F, Fabre F, Moury B, Palloix A (2017) Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation. J Gen Virol 98:1923–1931
Teige M, Scheikl E, Eulgem T, Doczi R, Ichimura K, Shinozaki K, Dangl JL, Hirt H (2004) The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis. Mol Cell 15:141–152
Thabuis A, Palloix A, Pflieger S, Daubèze A-M, Caranta C, Lefebvre V (2003) Comparative mapping of Phytophthora resistance loci in pepper germplasm: evidence for conserved resistance loci across Solanaceae and for a large genetic diversity. Theor Appl Genet 106:1473–1485
Thabuis A, Lefebvre V, Bernard G, Daubèze AM, Phaly T, Pochard E, Palloix A (2004) Phenotypic and molecular evaluation of a recurrent selection program for a polygenic resistance to Phytophthora capsici in pepper. Theor Appl Genet 109:342–351
Timmusk S, Nicander B, Granhall U, Tillberg E (1999) Cytokinin production by Paenibacillus polymyxa. Soil Biol Biochem 31:1847–1852
Ton J, Flors V, Mauch-Mani B (2009) The multifaceted role of ABA in disease resistance. Trends Plant Sci 14:310–317
Tsutsui T, Kato W, Asada Y et al (2009) DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis. J Plant Res 122:633–643
Vallejos CE, Jones V, Stall RE et al (2010) Characterization of two recessive genes controlling resistance to all races of bacterial spot in peppers. Theor Appl Genet 121:37–46
Vannini C, Iriti M, Bracale M, Locatelli F, Faoro F, Croce P, Pirona R, Di Maro A, Coraggio I, Genga A (2006) The ectopic expression of the rice Osmyb4 gene in Arabidopsis increases tolerance to abiotic, environmental and biotic stresses. Physiol Mol Plant Pathol 69:26–42
Vannini C, Campa M, Iriti M, Genga A, Faoro F, Carravieri S, Rotino GL, Rossoni M, Spinardi A, Bracale M (2007) Evaluation of transgenic tomato plants ectopically expressing the rice Osmyb4 gene. Plant Sci 173:231–239
Vessey JK (2003) Plant growth promoting rhizobacteria as biofertilizers. Plant Soil 255:571–586
Vogel JT, Zarka DG, Van Buskirk HA, Fowler SG, Thomashow MF (2005) Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J 41:195–211
Voorrips RE, Finkers R, Sanjaya L, Groenwold R (2004) QTL mapping of anthracnose (Colletotrichum spp.) resistance in a cross between Capsicum annuum and C. chinense. Theor Appl Genet 109:1275–1282
Walley JW, Dehesh K (2010) Molecular mechanisms regulating rapid stress signaling networks in Arabidopsis. J Integr Plant Biol 52:354–359
Wang X, Zhu X, Tooley P, Zhang X (2013) Cloning and functional analysis of three genes encoding polygalacturonase-inhibiting proteins from Capsicum annuum and transgenic CaPGIP1 in tobacco in relation to increased resistance to two fungal pathogens. Plant Mol Biol 81:379–400
Wang P, Liu X, Guo J, Liu C, Fu N, Shen H (2015) Identification and expression analysis of candidate genes associated with defense responses to Phytophthora capsici in pepper line “PI 201234”. Intl J Mol Sci 16:11417–11438
Wang H, Niu H, Zhai Y, Lu M (2017) Characterization of BiP genes from pepper (Capsicum annuum L.) and the role of CaBiP1 in response to endoplasmic reticulum and multiple abiotic stresses. Front Plant Sci 8:1122
Wong HL, Shimamoto K (2009) Sending ROS on a bullet train. Sci Signal 2: pe60
Wu Z, Cheng J, Cui J, Xu X, Liang G, Luo X, Chen X, Tang X, Hu K, Qin C (2016) Genome-wide identification and expression profile of dof transcription factor gene family in pepper (Capsicum annuum L.). Front Plant Sci 7:574
Xia N, Zhang G, Liu XY, Deng L, Cai GL, Zhang Y, Wang XJ, Zhao J, Huang LL, Kang ZS (2010) Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses. Mol Biol Rep 37:3703–3712
Xiong L, Yang Y (2003) Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. Plant Cell 15:745–759
Xu ZS, Chen M, Li LC, Ma YZ (2011) Functions and application of the AP2/ERF transcription factor family in crop improvement. J Integr Plant Biol 53:570–585
Yao M, Li N, Wang F, Ye Z (2013) Genetic analysis and identification of QTLs for resistance to cucumber mosaic virus in chili pepper (Capsicum annuum L.). Euphytica 193:135–145
Yasuda M, Ishikawa A, Jikumaru Y et al (2008) Antagonistic interaction between systemic acquired resistance and the abscisic acid-mediated abiotic stress response in Arabidopsis. Plant Cell 20:1678–1692
Yi SY, Kim J-H, Joung Y-H, Lee S, Kim W-T, Yu SH, Choi D (2004) The pepper transcription factor CaPF1 confers pathogen and freezing tolerance in Arabidopsis. Plant Physiol 136:2862–2874
Yi SY, Lee DJ, Yeom SI, Yoon J, Kim YH, Kwon SY, Choi D (2010) A novel pepper (Capsicum annuum) receptor-like kinase functions as a negative regulator of plant cell death via accumulation of superoxide anions. New Phytol 185:701–715
Yin Y-X, Wang S-B, Zhang H-X, Xiao H-J, Jin J-H, Ji J-J, Jing H, Chen R-G, Arisha MH, Gong Z-H (2015) Cloning and expression analysis of CaPIP1-1 gene in pepper (Capsicum annuum L.). Gene 563:87–93
Yoshida T, Fujita Y, Sayama H, Kidokoro S, Maruyama K, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K (2010) AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. Plant J 61:672–685
Yu C, Zhan Y, Feng X, Huang Z-A, Sun C (2017) Identification and expression profiling of the auxin response factors in Capsicum annuum L. under abiotic stress and hormone treatments. Intl J Mol Sci 18: https://doi.org/10.3390/ijms18122719
Zhai Y, Guo M, Wang H, Lu J, Liu J, Zhang C, Gong Z, Lu M (2016) Autophagy, a conserved mechanism for protein degradation, responds to heat, and other abiotic stresses in Capsicum annuum L. Front Plant Sci 7:131
Zhang T, Liu Y, Yang T, Zhang L, Xu S, Xue L, An L (2006) Diverse signals converge at MAPK cascades in plant. Plant Physiol Biochem 44:274–283
Zhang YL, Jia QL, Li DW, Wang JE, Yin YX, Gong ZH (2013) Characteristic of the pepper CaRGA2 gene in defense responses against Phytophthora capsici Leonian. Intl J Mol Sci 14:8985–9004
Zheng Z, Nonomura T, Appiano M et al (2013) Loss of function in Mlo orthologs reduces susceptibility of pepper and tomato to powdery mildew disease caused by Leveillula taurica. PLoS ONE 8(7):e70723
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This work was supported by UGC Resource Networking Grant, UGC-SAP, and DST FIST program to School of Life Sciences, Jawaharlal Nehru University, New Delhi, India.
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Jaiswal, V., Gahlaut, V., Dubey, M., Ramchiary, N. (2019). Genes/Quantitative Trait Loci and Associated Molecular Mechanisms Identified in Capsicum Genome for Tolerance to Abiotic and Biotic Stresses. In: Ramchiary, N., Kole, C. (eds) The Capsicum Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-319-97217-6_7
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