Abstract
The Cuatro Cienegas Basin (CCB) encompasses hundreds of aquatic systems that harbor diverse microbialites with different community structure composition and with the highest level of endemism in North America. Thus, CCB represents a desert oasis of high biodiversity. Despite the great importance of this unique site, increasing demand on water for agricultural development (forage and feed livestock) was first manifested with extraction of groundwater in 2011, starting the drying process of aquifers and desertification of the Churince Lagoon. As consequence, water levels have been drastically fluctuating, affecting all ecosystem functions. This chapter reviews a recent network-based approach used to understand how the anthropogenic disturbances affect one of the most resistant microbial communities since the Archean, microbial mats.
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References
Allison SD, Martiny JBH (2008) Resistance, resilience, and redundancy in microbial communities. PNAS 105(Suppl 1):11512–11519
Bascompte J (2010) Structure and dynamics of ecological networks. Science 329:765–766
Bascompte J, Stouffer DB (2009) The assembly and disassembly of ecological networks. Philos Trans R Soc Lond B Biol Sci 364:1781–1787. https://doi.org/10.1098/rstb.2008.0226
Bascompte J, Jordano P, Melián CJ et al (2003) The nested assembly of plant-animal mutualistic networks. PNAS 100:9383–9387. https://doi.org/10.1073/pnas.1633576100
Bolhuis H, Cretoiu MS, Stal LJ (2014) Molecular ecology of microbial mats. FEMS Microbiol Ecol 90:335–350. https://doi.org/10.1111/1574-6941.12408
Carson EW, Souza V, Espinosa-Pérez H et al (2015) Mitochondrial DNA diversity and phylogeography of Lucania interioris inform biodiversity conservation in the Cuatro Ciénegas Basin, México. West N Am Nat 75:200–208. https://doi.org/10.3398/064.075.0208
Cerritos R, Eguiarte LE, Avitia M et al (2011) Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México. Antonie Van Leeuwenhoek 99:303–318. https://doi.org/10.1007/s10482-010-9490-9
Chapin FS, Sala OE, Burke IC et al (1998) Ecosystem consequences of changing biodiversity. Bioscience 48:45–52. https://doi.org/10.2307/1313227
Des Marais DJ (2003) Biogeochemistry of hypersaline microbial mats illustrates the dynamics of modern microbial ecosystems and the early evolution of the biosphere. Biol Bull 204:160–167
Elser JJ, Watts J, Schampel JH et al (2006) Early Cambrian food webs on a trophic knife-edge? A hypothesis and preliminary data from a modern stromatolite-based ecosystem. Ecol Lett 9:292–300. https://doi.org/10.1111/j.1461-0248.2005.00873.x
Faust K, Raes J (2012) Microbial interactions: from networks to models. Nat Rev Microbiol 10:538–550. https://doi.org/10.1038/nrmicro2832
Faust K, Lahti L, Gonze D et al (2015) Metagenomics meets time series analysis: unraveling microbial community dynamics. Curr Opin Microbiol 25:56–66. https://doi.org/10.1016/j.mib.2015.04.004
Foti M, Ma S, Sorokin DY et al (2006) Genetic diversity and biogeography of haloalkaliphilic sulphur-oxidizing bacteria belonging to the genus Thioalkalivibrio. FEMS Microbiol Ecol 56:95–101. https://doi.org/10.1111/j.1574-6941.2006.00068.x
Freilich S, Zarecki R, Eilam O et al (2011) Competitive and cooperative metabolic interactions in bacterial communities. Nat Commun 2:587–589. https://doi.org/10.1038/ncomms1597
Graf J (2014) The family Rikenellaceae. In: Rosenberg E, DeLong EF, Lory S et al (eds) The prokaryotes: other major lineages of bacteria and the archaea. Springer, Berlin, Heidelberg, pp 857–859
Grilli J, Rogers T, Allesina S (2016) Modularity and stability in ecological communities. Nat Commun 7:12031. https://doi.org/10.1038/ncomms12031
Guimarães PR, Rico-Gray V, dos Reis SF, Thompson JN (2006) Asymmetries in specialization in ant-plant mutualistic networks. Proc Biol Sci 273:2041–2047. https://doi.org/10.1098/rspb.2006.3548
Guimarães PR, Pires MM, Jordano P et al (2017) Indirect effects drive coevolution in mutualistic networks. Nature 550:511–514. https://doi.org/10.1038/nature24273
Hernández A, Espinosa-Pérez HS, Souza V (2017) Trophic analysis of the fish community in the Ciénega Churince, Cuatro Ciénegas, Coahuila. PeerJ 5:e3637. https://doi.org/10.7717/peerj.3637
Kerr B, Riley MA, Feldman MW, Bohannan BJM (2002) Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 418:171–174. https://doi.org/10.1038/nature00823
Konopka A (2009) What is microbial community ecology? ISME J 3:1223–1230. https://doi.org/10.1038/ismej.2009.88
Konopka AE, Lindemann S, Fredrickson JK (2015) Dynamics in microbial communities: unraveling mechanisms to identify principles. ISME J 9:1488–1495. https://doi.org/10.1038/ismej.2014.251
Minckley W (1969) Environments of the Bolson of Cuatro Cienegas, Coahuila, Mexico. Sci Ser 2:1–65
Minckley TA, Jackson ST (2007) Ecological stability in a changing world? Reassessment of the palaeoenvironmental history of Cuatrociénegas, Mexico. J Biogeogr 35:188–190. https://doi.org/10.1111/j.1365-2699.2007.01829.x
Montiel-González C, Tapia-Torres Y, Souza V et al (2017) The response of soil microbial communities to variation in annual precipitation depends on soil nutritional status in an oligotrophic desert. PeerJ 5:e4007. https://doi.org/10.7717/peerj.4007
Newman MEJ (2006) Modularity and community structure in networks. PNAS 103:8577–8582. https://doi.org/10.1073/pnas.0601602103
Newman MEJ, Girvan M (2004) Finding and evaluating community structure in networks. Phys Rev E 69:26113. pmid:14995526
Oren A (1988) Anaerobic degradation of organic compounds at high salt concentrations. Antonie Van Leeuwenhoek 54:267–277. https://doi.org/10.1007/BF00443585
Oren A (2008) Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Systems 4:1–13. https://doi.org/10.1186/1746-1448-4-2
Pajares S, Bonilla-Rosso G, Travisano M et al (2012) Mesocosms of aquatic bacterial communities from the Cuatro Cienegas Basin (Mexico): a tool to test bacterial community response to environmental stress. Microb Ecol 64:346–358. https://doi.org/10.1007/s00248-012-0045-7
Peralta AL, Ludmer S, Matthews JW, Kent AD (2014) Bacterial community response to changes in soil redox potential along a moisture gradient in restored wetlands. Ecol Eng 73:246–253. https://doi.org/10.1016/j.ecoleng.2014.09.047
Podosokorskaya OA, Bonch-Osmolovskaya EA, Novikov AA et al (2013) Ornatilinea apprima gen. nov., sp. nov., a cellulolytic representative of the class Anaerolineae. Int J Syst Evol Microbiol 63:86–92. https://doi.org/10.1099/ijs.0.041012-0
Prieto-Barajas CM, Valencia-Cantero E, Santoyo G (2017) Microbial mat ecosystems: structure types, functional diversity, and biotechnological application. Electron J Biotechnol 31:48–56. https://doi.org/10.1016/j.ejbt.2017.11.001
Rohr RP, Saavedra S, Bascompte J (2014) On the structural stability of mutualistic systems. Science 345:1253497. https://doi.org/10.1126/science.1253497
Shade A, Peter H, Allison SD et al (2012) Fundamentals of microbial community resistance and resilience. Front Microbiol 3:1–19. https://doi.org/10.3389/fmicb.2012.00417
Shaw GTW, Pao YY, Wang D (2016) MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles. BMC Bioinformatics 17:488. https://doi.org/10.1186/s12859-016-1359-0
Song HS, Cannon W, Beliaev A, Konopka A (2014) Mathematical modeling of microbial community dynamics: a methodological review. Processes 2:711–752. https://doi.org/10.3390/pr2040711
Sorokin DY, Kuenen JG, Muyzer G (2011) The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes. Front Microbiol 2:1–16. https://doi.org/10.3389/fmicb.2011.00044
Souza V, Espinosa-Asuar L, Escalante AE et al (2006) An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert. PNAS 103:6565–6570. https://doi.org/10.1073/pnas.0601434103
Souza V, Falcón LI, Elser JJ et al (2007) Protecting a window into the ancient earth: towards a Precambrian Park at Cuatro Cienegas, Mexico. The Citizen’s page. Evol Ecol Res. Available online at http://www.evolutionary-ecology.com/citizen/citizen.html
Souza V, Siefert JL, Escalante AE et al (2012) The Cuatro Ciénegas Basin in Coahuila, Mexico: an astrobiological Precambrian Park. Astrobiology 12:641–647. https://doi.org/10.1089/ast.2011.0675
Stein RR, Bucci V, Toussaint NC et al (2013) Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. PLoS Comput Biol 9:31–36. https://doi.org/10.1371/journal.pcbi.1003388
Tilman D (1999) The ecological consequences of changes in biodiversity: a search for general principles. Ecology 80:1455–1474. https://doi.org/10.2307/176540
Tilman D (2004) Niche tradeoffs, neutrality, and community structure: a stochastic theory of resource competition, invasion, and community assembly. Proc Natl Acad Sci 101:10854–10861. https://doi.org/10.1073/pnas.0403458101
Tilman D, Reich PB, Knops JMH (2006) Biodiversity and ecosystem stability in a decade-long grassland experiment. Nature 441:629–632. https://doi.org/10.1038/nature04742
van Gemerden H (1993) Microbial mats: A joint venture. Mar Geol 113:3–25. https://doi.org/10.1016/0025-3227(93)90146-M
Weng FCH, Shaw GTW, Weng CY et al (2017) Inferring microbial interactions in the gut of the Hong Kong whipping frog (Polypedates megacephalus) and a validation using probiotics. Front Microbiol 8:1–11. https://doi.org/10.3389/fmicb.2017.00525
Wolaver BD, Diehl TM (2010) Control of regional structural styles and faulting on Northeast Mexico spring distribution. Environ Earth Sci 62:1535–1549. https://doi.org/10.1007/s12665-010-0639-7
Wolaver BD, Crossey LJ, Karlstrom KE et al (2012) Identifying origins of and pathways for spring waters in a semiarid basin using He, Sr, and C isotopes: Cuatrocienegas Basin, Mexico. Geosphere 9:113–125. https://doi.org/10.1130/GES00849.1
Xiao Y, Angulo MT, Friedman J et al (2017) Mapping the ecological networks of microbial communities. Nat Commun 8:2042. https://doi.org/10.1038/s41467-017-02090-2
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De Anda, V., Zapata-Peñasco, I., Eguiarte, L.E., Souza, V. (2018). Toward a Comprehensive Understanding of Environmental Perturbations in Microbial Mats from the Cuatro Cienegas Basin by Network Inference. In: García-Oliva, F., Elser, J., Souza, V. (eds) Ecosystem Ecology and Geochemistry of Cuatro Cienegas. Cuatro Ciénegas Basin: An Endangered Hyperdiverse Oasis. Springer, Cham. https://doi.org/10.1007/978-3-319-95855-2_7
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