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Automatic Segmentation and Quantification of Thigh Tissues in CT Images

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Computational Science and Its Applications – ICCSA 2018 (ICCSA 2018)

Abstract

Quantification and distribution of the thigh adipose tissues in CT images have clinical implication in prognostic chronic disease including type 2 diabetes and osteoarthritis. Although there are studies in the literature addressing the quantification of thigh tissues, only a handful of them aims to segment and quantify thigh adipose tissues in CT images automatically. In this study, we propose an automated technique for the segmentation and quantification of muscle, inter- and intra-muscular adipose tissue and subcutaneous adipose tissue in thigh CT images. Our technique combines morphological operations, thresholding, a Gaussian mixture model and the use of an accumulator matrix to map the number of adipose tissue pixels about muscle pixels and thus, to allow an automatic differentiation between SAT and Inter-MAT. Our method was quantitatively assessed using 144 thigh images extracted from 72 leg (left and right) CT scans. All images were manually segmented and the tissues quantified by a specialist with the help of a computer software and used for further comparative analysis. Our technique obtained precision of 0.998 and 0.982, respectively, for the fascia and thigh regions with corresponding recall values of 0.978 and 0.975. Also, the Dice similarity coefficient for both areas was close to 0.98.

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Notes

  1. 1.

    http://www.who.int/mediacentre/factsheets/fs311/en/.

  2. 2.

    Fascia is a sheet of connective tissue beneath the skin that attaches, stabilizes, encloses, and separates muscles and other internal organs.

References

  1. Stehno-Bittel, L.: Intermuscular fat: a review of the consequences and causes. Phys. Ther. 88(11), 1265–1278 (2008)

    Article  Google Scholar 

  2. Sartori-Cintra, A.R., Aikawa, P., Cintra, D.E.C.: Obesity versus osteoarthritis: beyond the mechanical overload. Einstein (São Paulo) 12(3), 374–379 (2014)

    Article  Google Scholar 

  3. Goodpaster, B.H., Krishnaswami, S., Resnick, H., Kelley, D.E., Haggerty, C., Harris, T.B., Schwartz, A.V., Kritchevsky, S., Newman, A.B.: Association between regional adipose tissue distribution and both type 2 diabetes and impaired glucose tolerance in elderly men and women. Diabetes Care 26(2), 372–379 (2003)

    Article  Google Scholar 

  4. Addison, O., Marcus, R.L., LaStayo, P.C., Ryan, A.S.: Intermuscular fat: a review of the consequences and causes. Int. J. Endocrinol. 2014(309570), 1–11 (2014)

    Article  Google Scholar 

  5. Visser, M., Goodpaster, B.H., Kritchevsky, S.B., Newman, A.B., Nevitt, M., Rubin, S.M., Simonsick, E.M., Harris, T.B.: Muscle mass, muscle strength, and muscle fat infiltration as predictors of incident mobility limitations in well-functioning older persons. J. Gerontol. Ser. A: Biol. Sci. Med. Sci. 60(3), 324–333 (2005)

    Article  Google Scholar 

  6. Visser, M., Kritchevsky, S.B., Goodpaster, B.H., Newman, A.B., Nevitt, M., Stamm, E., Harris, T.B.: Leg muscle mass and composition in relation to lower extremity performance in men and women aged 70 to 79: the health, aging and body composition study. J. Am. Geriatr. Soc. 50(5), 897–904 (2002)

    Article  Google Scholar 

  7. Karampinos, D.C., Baum, T., Nardo, L., Alizai, H., Yu, H., Carballido-Gamio, J., Yap, S.P., Shimakawa, A., Link, T.M., Majumdar, S.: Characterization of the regional distribution of skeletal muscle adipose tissue in type 2 diabetes using chemical shift-based water/fat separation. J. Magn. Reson. Imaging 35(4), 899–907 (2012)

    Article  Google Scholar 

  8. Martínez-Martínez, F., Kybic, J., Lambert, L., Mecková, Z.: Fully automated classification of bone marrow infiltration in low-dose CT of patients with multiple myeloma based on probabilistic density model and supervised learning. Computers in Biology and Medicine 71(Supplement C), 57–66 (2016)

    Article  Google Scholar 

  9. Wattjes, M.P., Kley, R.A., Fischer, D.: Neuromuscular imaging in inherited muscle diseases. Eur. Radiol. 20(10), 2447–2460 (2010)

    Article  Google Scholar 

  10. Yoshizumi, T., Tadashi-Nakamura, R.T., Yamane, M., Waliul-Islam, A.H.M., Menju, M., Yamasaki, K., Arai, T., Kotani, K., Funahashi, T., Yamashita, S., Matsuzawa, Y.: Abdominal fat: standardized technique for measurement at CT. Radiology 211, 283–286 (1999)

    Article  Google Scholar 

  11. Kim, Y.J., Park, J.W., Kim, J.W., Park, C.S., Gonzalez, J.P.S., Lee, S.H., Kim, K.G., Oh, J.H.: Computerized automated quantification of subcutaneous and visceral adipose tissue from computed tomography scans: development and validation study. JMIR Med. Inform. 4(1), e2 (2016)

    Article  Google Scholar 

  12. Rodrigues, É., Rodrigues, L., Oliveira, L., Conci, A., Liatsis, P.: Automated recognition of the pericardium contour on processed CT images using genetic algorithms. Computers in Biology and Medicine 87(Supplement C), 38–45 (2017)

    Article  Google Scholar 

  13. Yu, P., Poh, C.L.: Region-based snake with edge constraint for segmentation of lymph nodes on CT images. Computers in Biology and Medicine 60(Supplement C), 86–91 (2015)

    Article  Google Scholar 

  14. Athertya, J.S., Kumar, G.S.: Automatic segmentation of vertebral contours from CT images using fuzzy corners. Computers in Biology and Medicine 72(Supplement C) (2016) 75–89

    Article  Google Scholar 

  15. Tan, C., Li, K., Yan, Z., Yang, D., Zhang, S., Yu, H.J., Engelke, K., Miller, C., Metaxas, D.: A detection-driven and sparsity-constrained deformable model for fascia lata labeling and thigh inter-muscular adipose quantification. Comput. Vis. Image Underst. 151, 80–89 (2016)

    Article  Google Scholar 

  16. Nemoto, M., Yeernuer, T., Masutani, Y., Nomura, Y., Hanaoka, S., Miki, S., Yoshikawa, T., Hayashi, N., Ohtomo, K.: Development of automatic visceral fat volume calculation software for CT volume data. J. Obes. 2014, 495084 (2014)

    Article  Google Scholar 

  17. Ciecholewski, M.: Automatic liver segmentation from 2D CT images using an approximate contour model. J. Sig. Process. Syst. 74(2), 151–174 (2014)

    Article  Google Scholar 

  18. Tan, C., Yan, Z., Zhang, S.: An automated and robust framework for quantification of muscle and fat in the thigh. In: 22nd International Conference on Pattern Recognition. ICPR 2014, Stockholm, Sweden, pp. 24–28. IEEE, August 2014

    Google Scholar 

  19. Positano, V., Christiansen, T., Santarelli, M.F., Ringgaard, S., Landini, L., Gastaldelli, A.: Accurate segmentation of subcutaneous and intermuscular adipose tissue from MR images of the thigh. J. Magn. Reson. Imaging 29(3), 677–684 (2009)

    Article  Google Scholar 

  20. Peng, Q., McColl, R.W., Ding, Y., Wang, J., Chia, J.M., Weatherall, P.T.: Automated method for accurate abdominal fat quantification on water-saturated magnetic resonance images. J. Magn. Reson. Imaging 26(3), 738–746 (2007)

    Article  Google Scholar 

  21. Positano, V., Gastaldelli, A., Santarelli, M.F., Lombardi, M., Landini, L.: An accurate and robust method for unsupervised assessment of abdominal fat by MRI. J. Magn. Reson. Imaging 20(4), 684–689 (2004)

    Article  Google Scholar 

  22. Senseney, J., Hemler, P.: Automated segmentation of computed tomography images. In: IEEE Symposium on Computer-Based Medical Systems, CBMS-2009, pp. 1–7. IEEE, New Mexico, August 2009

    Google Scholar 

  23. Kullberg, J., Hedström, A., Brandberg, J., Strand, R., Johansson, L., Bergström, G., Ahlström, H.: Automated analysis of liver fat, muscle and adipose tissue distribution from CT suitable for large-scale studies. Sci. Rep. 7(1), 1–11 (2017)

    Article  Google Scholar 

  24. Yushkevich, P.A., Piven, J., Hazlett, H.C., Smith, R.G., Ho, S., Gee, J.C., Gerig, G.: User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability. Neuroimage 31(3), 1116–1128 (2006)

    Article  Google Scholar 

  25. Hendee, W.R., Ritenour, E.R.: Medical Imaging Physics, 4th edn. Wiley, New York (2002)

    Book  Google Scholar 

  26. Zhang, J., Yan, C.H., Chui, C.K., Ong, S.H.: Fast segmentation of bone in CT images using 3D adaptive thresholding. Comput. Biol. Med. 40(2), 231–236 (2010)

    Article  Google Scholar 

  27. Goodpaster, B.H., Thaete, F.L., Kelley, D.E.: Composition of skeletal muscle evaluated with computed tomography. Ann. New York Acad. Sci. 904(1), 18–24 (2000)

    Article  Google Scholar 

  28. Freire, P.G.L., Ferrari, R.J.: Automatic iterative segmentation of multiple sclerosis lesions using Student’s t mixture model and probabilistic anatomical atlases in FLAIR images. Computers in Biology and Medicine 73(Supplement C) (2016) 10–23

    Article  Google Scholar 

  29. Goutte, C., Gaussier, E.: A probabilistic interpretation of precision, recall and F-score, with implication for evaluation. In: Losada, D.E., Fernández-Luna, J.M. (eds.) ECIR 2005. LNCS, vol. 3408, pp. 345–359. Springer, Heidelberg (2005). https://doi.org/10.1007/978-3-540-31865-1_25

    Chapter  Google Scholar 

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Acknowledgments

The authors would like to thank the São Paulo Research Foundation (FAPESP) (grant number 2016/15661-0) and the Coordination for the Improvement of Higher Education Personnel (CAPES) for the finantial support of this research.

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Correspondence to Jonas de Carvalho Felinto .

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de Carvalho Felinto, J. et al. (2018). Automatic Segmentation and Quantification of Thigh Tissues in CT Images. In: Gervasi, O., et al. Computational Science and Its Applications – ICCSA 2018. ICCSA 2018. Lecture Notes in Computer Science(), vol 10960. Springer, Cham. https://doi.org/10.1007/978-3-319-95162-1_18

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  • DOI: https://doi.org/10.1007/978-3-319-95162-1_18

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