Abstract
Modeling variability in tensor decomposition methods is one of the challenges of source separation. One possible solution to account for variations from one data set to another, jointly analysed, is to resort to the PARAFAC2 model. However, so far imposing constraints on the mode with variability has not been possible. In the following manuscript, a relaxation of the PARAFAC2 model is introduced, that allows for imposing nonnegativity constraints on the varying mode. An algorithm to compute the proposed flexible PARAFAC2 model is derived, and its performance is studied on both synthetic and chemometrics data.
Research funded by F.R.S.-FNRS incentive grant for scientific research n\(^\text {o}\) F.4501.16.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsNotes
- 1.
Alternating optimization may be avoided using an all-at-once method but the problem of satisfying the nonnegativity constraints still remains.
References
Amigo, J.M., Skov, T., Bro, R., Coello, J., Maspoch, S.: Solving GC-MS problems with PARAFAC2. TrAC Trends Anal. Chem. 27(8), 714–725 (2008)
Ballabio, D., Skov, T., Leardi, R., Bro, R.: Classification of GC-MS measurements of wines by combining data dimension reduction and variable selection techniques. J. Chemometr. 22(8), 457–463 (2008)
Farias, R.C., Cohen, J.E., Comon, P.: Exploring multimodal data fusion through joint decompositions with flexible couplings. IEEE Trans. Sign. Process. 64(18), 4830–4844 (2016)
Comon, P., Luciani, X., de Almeida, A.L.F.: Tensor decompositions, alternating least squares and other tales. J. Chemometr. 23(7–8), 393–405 (2009)
García, I., Sarabia, L., Ortiz, M.C., Aldama, J.M.: Building robust calibration models for the analysis of estrogens by gas chromatography with mass spectrometry detection. Anal. Chim. Acta 526(2), 139–146 (2004)
Gillis, N., Glineur, F.: Accelerated multiplicative updates and hierarchical ALS algorithms for nonnegative matrix factorization. Neural Comput. 24(4), 1085–1105 (2012)
Harshman, R.A.: PARAFAC2: Mathematical and technical notes. UCLA Work. Pap. phonetics, 22, pp. 30–44 (1972). 122215
Harshman, R.A., Hong, S., Lundy, M.E.: Shifted factor analysis–part I: models and properties. J. Chemometr. 17(7), 363–378 (2003)
Johnsen, L.G., Skou, P.B., Khakimov, B., Bro, R.: Gas chromatography-mass spectrometry data processing made easy. J. Chromatogr. A 1503, 57–64 (2017)
Kiers, H.A.L., Ten Berge, J.M.F., Bro, R.: PARAFAC2-part I. a direct fitting algorithm for the PARAFAC2 model. J. Chemometr. 13(3–4), 275–294 (1999)
Mørup, M., Hansen, L.K., Arnfred, S.M., Lim, L.-H., Madsen, K.H.: Shift-invariant multilinear decomposition of neuroimaging data. NeuroImage 42(4), 1439–1450 (2008)
Pompili, F., Gillis, N., Absil, P.-A., Glineur, F.: Two algorithms for orthogonal nonnegative matrix factorization with application to clustering. Neurocomputing 141, 15–25 (2014)
Skov, T., Bro, R.: A new approach for modelling sensor based data. Sens. Actuators B: Chem. 106(2), 719–729 (2005)
Wise, B.M., Gallagher, N.B., Martin, E.B.: Application of PARAFAC2 to fault detection and diagnosis in semiconductor etch. J. Chemometr. 15(4), 285–298 (2001)
Nocedal, J., Wright, S.J.: Sequential quadratic programming. Springer, New York (2006)
Acknowledgements
The authors wish to thank Nicolas Gillis for helpful discussions on alternatives to the flexible coupling approach for computing nonnegative PARAFAC2.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer International Publishing AG, part of Springer Nature
About this paper
Cite this paper
Cohen, J.E., Bro, R. (2018). Nonnegative PARAFAC2: A Flexible Coupling Approach. In: Deville, Y., Gannot, S., Mason, R., Plumbley, M., Ward, D. (eds) Latent Variable Analysis and Signal Separation. LVA/ICA 2018. Lecture Notes in Computer Science(), vol 10891. Springer, Cham. https://doi.org/10.1007/978-3-319-93764-9_9
Download citation
DOI: https://doi.org/10.1007/978-3-319-93764-9_9
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-93763-2
Online ISBN: 978-3-319-93764-9
eBook Packages: Computer ScienceComputer Science (R0)