Abstract
The evolutionary history of organisms is summarized in this chapter, starting from the origin of life. Evolution of the genetic code is discussed with reference to tRNAs, and estimation of the phylogenetic relationship of metabolic pathways before the diversification of prokaryotes and eukaryotes is given. The history of eukaryotes follows with special reference to multicellular lineages, finally reaching us human beings.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Hinshaw, G., et al. (2009). Maps, and basic results. Astrophysical Journal Supplement Series, 180, 225.
Anders, E., & Ebihara, M. (1982). Solar-system abundances of the elements. Geochimica et Cosmochimica Acta, 46, 2363–2380.
Tilton, G. G. (1988). Age of the solar system. Meteorites and the early solar system (pp. 259–275). Tucson: University of Arizona Press.
Sleep, N. H., Zahnle, K. J., Kasting, J. F., & Morowitz, H. J. (1989). Annihilation of ecosystems by large asteroid impacts on the early Earth. Nature, 342, 139–142.
Bell, E. A., Boehnke, P., Harrison, T. M., & Mao, W. L. (2015). Potentially biogenic carbon preserved in a 4.1 billion-year-old zircon. PNAS, 112, 14518–14521.
Crick, F. R. C., & Orgel, L. E. (2011). Directed panspermia. Icarus, 19, 341–346.
Super-complex organic molecules found in interstellar space. Royal Astronomical Society News Archive. (http://www.ras.org.uk/news-and-press/157-news2010/1853-complex-space-molecules).
Gilbert, W. (1986). The RNA world. Nature, 316, 618.
Weiner, A. M., & Maizels, N. (1999). The genomic tag hypothesis: Modern viruses as molecular fossils of ancient strategies for genomic replication, and clues regarding the origin of protein synthesis. The Biological Bulletin, 196, 327–330.
Saitou, N. (2013). Introduction to evoutionary genomics (fisrt ed.). London: Springer.
Nagel, G. M., & Doolittle, R. F. (1995). Phylogenetic analysis of the aminoacyl-tRNA synthetases. Journal of Molecular Evolution, 40, 487–498.
Woose, C. R., Olsen, G. J., Ibba, M., & Soll, D. (2000). Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiology and Molecular Biology Reviews, 64, 202–236.
Hartman, H., & Smith, T. F. (2014). The Evolution of the ribosome and the genetic code. Life, 4, 227–249.
Tomiki, T., & Saitou, N. (2004). Phylogenetic analysis of proteins associated in four major energy metabolism systems: Photosynthesis, oxidative phosphorylation, nitrogen metabolism and sulfur metabolism. Journal of Molecular Evolution, 59, 158–176. zseri.
OOta, S., & Saitou, N. (1999). Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees. Molecular Biology and Evolution, 16, 856–867.
Bekker, A., Holland, H. D., Wang, P. L., Rumble, D., III, Stein, H. J., Hannah, J. L., et al. (2004). Dating the rise of atmospheric oxygen. Nature, 427, 117–120.
Takemura, M. (2017). Viruses evolved organisms (in Japanese). Tokyo: Kodansha Blue Backs Series.
He, D., Fiz-Palacios, O., Fu, C.-J., Fehling, J., Tsai, C.-C., & Baldauf, S. L. (2014). An alternative root for the eukaryote tree of life. Current Biology, 24, 465–470.
Yokono, M., Satoh, S., & Tanaka, A. (2018). Comparative analyses of whole- genome protein sequences from multiple organisms. Scientific Reports, 8, 6800.
Finnet, C., Timme, R. E., Delwiche, C. F., & Marletaz, F. (2010). Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Current Biology, 20, 2217–2222.
Grigoriev, I. V., et al. (2014). MycoCosm portal: Gearing up for 1000 fungal genomes. Nucleic Acids Research, 42, D699–D704.
Ruiz-Trillo, I., Roger, A. I., Burger, G., Gray, M. W., & Lang, B. F. (2008). A phylogenomic investigation into the origin of Metazoa. Molecular Biology and Evolution, 25, 664–672.
Telford, M. J., Budd, G. E., & Philippe, H. (2015). Phylogenomic insights into animal evolution. Current Biology, 25, R876–R887.
Dehal, P., et al. (2002). The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins. Science, 298, 2157–2167.
Putnam, N. H., et al. (2008). The amphioxus genome and the evolution of the chordate karyotype. Nature, 453, 1064–1071.
Hedges, S. B. (2009). Chapter 39: Vertebrates (Vertebrata). In S. B. Hedges & S. Kumar (Eds.), The timetree of life (pp. 309–314). Oxford: Oxford University Press.
Takezaki, N., Figueroa, F., Zaleska-Rutczynska, Z., & Klein, J. (2003). Molecular phylogeny of early vertebrates: Monophyly of the Agnathans as revealed by sequences of 35 genes. Molecular Biology and Evolution, 20, 287–292.
PALEOMAP project (http://www.scotese.com/earth.htm).
Tarver, J. E., et al. (2016). The interrelationships of placental mammals and the limits of phylogenetic inference. Genome Biology and Evolution, 8, 330–344.
Murphy, W. J., & Eizirik, E. (2009). Chapter 71: Placental mammals (Eutheria). In S. B. Hedges & S. Kumar (Eds.), The timetree of life (pp. 471–474). Oxford: Oxford University Press.
Shulte, P., et al. (2010). The Chicxulub asteroid impact and mass extinction at the Cretaceous- Paleogene boundary. Science, 327, 1214–1218.
Steiper, M. E., & Young, N. M. (2009). Chapter 74: Primates. In S. B. Hedges & S. Kumar (Eds.), The timetree of life (pp. 482–486). Oxford: Oxford University Press.
Hara, Y., Imanishi, T., & Satta, Y. (2012). Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes. Genome Biology and Evolution, 4, 1133–1145.
Takahata, N., & Satta, Y. (1997). Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences. Proceedings of the National Academy of Sciences USA, 94, 4811–4815.
Saitou, N. (2017). Human evolution and human genome at a glance. In N. Saitou (Ed.), Evolution of the Human Genome Genes and Genomes (Vol. I, pp. 3–18)., Evolutionary Study Series Tokyo: Springer.
Gribbin, J., & Charfas, J. (1982). The monkey puzzle. New York: Pantheon Books.
Goodman, M. (1962). Evolution of the immunologic species specificity of human serum proteins. Human Biology, 34, 104–150.
Saitou, N. (2005). Evolution of hominoids and the search for a genetic basis for creating humanness. Cytogenetic and Genome Research, 108, 16–21.
Satta, Y., Klein, J., & Takahata, N. (2000). DNA archives and our nearest relative: The trichotomy problem revisited. Molecular Phylogenetics and Evolution, 14, 259–275.
Chen, F. C., & Li, W.-H. (2001). Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. American Journal of Human Genetics, 68, 444–456.
O’huigin, C., Satta, Y., Takahata, N., & Klein, J. (2002). Contribution of homoplasy and of ancestral polymorphism to the evolution of genes in anthropoid primates. Molecular Biology and Evolution, 19, 1501–1513.
Kitano, T., Liu, Y.-H., Ueda, S., & Saitou, N. (2004). Human specific amino acid changes found in 103 protein coding genes. Molecular Biology and Evolution, 21, 936–944.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
Copyright information
© 2018 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Saitou, N. (2018). Brief History of Life. In: Introduction to Evolutionary Genomics. Computational Biology, vol 17. Springer, Cham. https://doi.org/10.1007/978-3-319-92642-1_7
Download citation
DOI: https://doi.org/10.1007/978-3-319-92642-1_7
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-92641-4
Online ISBN: 978-3-319-92642-1
eBook Packages: Computer ScienceComputer Science (R0)