Abstract
The behavior of water in nanoscale confinement of phospholipid surfactant is interesting not only for our understanding of processes which take place inside living cells but is also important from the point of view of applications (cosmetic, pharmaceutical, medicine, and food industries). We performed a series of molecular dynamics (MD) simulations of water molecules embedded in the DMPC reverse micelle for temperatures ranging from 280 to 320 K. The following observables were calculated and discussed: mean square displacement, water–water pair distribution function, translational diffusion coefficients, and activation energy.
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References
Shah DO (1998) Micelles, microemulsions, and monolayers. Marcel Dekker, Inc, New York
Fathi H, Kelly JP, Vasquez VR, Graeve OA (2012) Ionic concentration effects on reverse micelle size and stability: implications for the synthesis of nanoparticles. Langmuir 28:9267–9274. https://doi.org/10.1021/la300586f
Kachel A, Gburski Z (1997) Chain formation in a model dipolar liquid: computer simulation study. J Phys Condens Matter 9:10095–10100. https://doi.org/10.1088/0953-8984/9/46/007
Pal S, Balasubramanian S, Bagchi B (2003) Identity, energy, and environment of interfacial water molecules in a micellar solution. J Phys Chem B 107:5194–5202. https://doi.org/10.1021/jp022349+
Piatek A, Dawid A, Gburski Z (2006) The existence of a plastic phase and a solid-liquid dynamical bistability region in small fullerene cluster (C-60)(7): molecular dynamics simulation. J Phys Cond-Matter 18:8471–8480. https://doi.org/10.1088/0953-8984/18/37/006
Raczynski P, Gorny K, Pabiszczak M, Gburski Z (2013) Nanoindentation of biomembrane by carbon nanotubes – MD simulation. Comp Mat Science 70:13–18. https://doi.org/10.1016/j.commatsci.2012.12.031
Senapati S, Berkowitz ML (2004) Computer simulation studies of water states in perfluoro polyether reverse micelles: effects of changing the counterion. J Phys Chem A 108:9768–9776. https://doi.org/10.1021/jp048954p
Gburski Z, Gorny K, Raczynski P (2010) The impact of a carbon nanotube on the cholesterol domain localized on a protein surface. Solid State Commun 150:415–418. https://doi.org/10.1016/j.ssc.2009.12.005
Kosmider M, Dendzik Z, Palucha S, Gburski Z Computer simulation of argon cluster inside a single-walled carbon nanotube. J Mol Struct 704:197–291. https://doi.org/10.1016/j.molstruc.2004.02.050
Feller SE, Yin D, Pastor RW, MacKerell AD (1977) Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies. Biophys J 73:2269–2279. https://doi.org/10.1016/S0006-3495(97)78259-6
Faramarzi S, Bonnett B, Scaggs CS, Ho A, Grodi D, Harvey E, Mertz B (2017) Molecular dynamics simulations as a tool for accurate determination of surfactant micelle properties. Langmuir 33:9934–9943. https://doi.org/10.1021/acs.langmuir.7b02666
Munusamy E, Luft C, Pemberton M, Schwartz SD Structural properties of nonionic Monorhamnolipid aggregates in water studied by classical molecular dynamics simulations. J Phys Chem B 121:5781–5793. https://doi.org/10.1021/acs.jpcb.7b00997
Dawid A, Gburski Z (2003) Interaction-induced light scattering in a fullerene surrounded by an ultrathin argon “atmosphere”: molecular dynamics simulation. Phys Rev A 68:065202. https://doi.org/10.1103/PhysRevA.68.065202
Abel S, Dupradeau FY, Raman EP, MacKerell AD, Marchi M (2011) Molecular simulations of dodecyl-β-maltoside micelles in water: influence of the headgroup conformation and force field parameters. J Phys Chem B 115:487–499. https://doi.org/10.1021/jp109545v
Gburski Z (1985) Convergence of memory functions for the vibrational dephasing process in 123 liquids. Chem Phys Lett 115:236–240. https://doi.org/10.1016/0009-2614(85)80687-4
Abel S, Dupradeau FY, Marchi M (2012) Molecular dynamics simulations of a characteristic DPC micelle in water. J Chem Theory Comput 8:4610–4623. https://doi.org/10.1021/ct3003207
Stassen H, Gburski Z (1994) Instantaneous normal-mode analysis of binary-liquid Ar-Kr mixtures. Chem Phys Lett 217:325–332. https://doi.org/10.1016/0009-2614(93)E1390-3
Bruce C, Senapati S, Berkowitz ML, Perera L, Forbes MDE (2002) Molecular dynamics simulations of sodium dodecyl sulfate micelle in water: the behavior of water. J Phys Chem B 106:10902–10907. https://doi.org/10.1021/jp013616z
Dawid A, Gburski Z (2003) Rayleigh light scattering in fullerene covered by a spherical argon film - a molecular dynamics study. J Phys Cond-Matter 15:2399–2405. https://doi.org/10.1088/0953-8984/15/14/315
Sanders SA, Sammalkorpi M, Panagiotopoulos AZ (2012) Atomistic simulations of micellization of sodium hexyl, heptyl, octyl, and nonyl sulfates. J Phys Chem B 116:2430–2437. https://doi.org/10.1021/jp209207p
Marrink SJ, deVries AH, Mark AE (2004) Coarse grained model for semiquantitative lipid simulations. J Phys Chem B 108:750–760. https://doi.org/10.1021/jp036508g
Gburski Z (1984) Line shape in collision-induced absorption – Mori theory. Chem Phys Letters 106:55–59. https://doi.org/10.1016/0009-2614(84)87010-4
Santos AP, Panagiotopoulos AZ (2016) Determination of the critical micelle concentration in simulations of surfactant systems. J Chem Phys 144:044709. https://doi.org/10.1063/1.4940687
Marrink SJ, Tieleman DP, Mark AE (2000) Molecular dynamics simulation of the kinetics of spontaneous micelle formation. J Phys Chem B 104:12165–12173. https://doi.org/10.1021/jp001898h
Gwizdala W, Gorny K, Gburski Z (2008) Molecular dynamics and dielectric loss in 4-cyano-4-n-pentylbiphenyl (5CB) mesogene film surrounding carbon nanotube – computer simulation. J Molec Struct 887:148–151. https://doi.org/10.1016/j.molstruc.2007.12.045
Dawid A, Dendzik Z, Gburski Z (2004) Molecular dynamics study of ultrathin argon layer covering fullerene molecule. J Molec Struct 704:173–176. https://doi.org/10.1016/j.molstruc.2004.01.065
Schlenkrich M, Brickmann J, MacKerell AD, Karplus M (1996) An empirical potential energy function for phospholipids: criteria for parameter optimization and applications, In: K.M. Merz, B. Roux (eds), Biol Membr Mol Perspect Comput Exp, Birkhäuser Boston, Boston, pp 31–81. https://doi.org/10.1007/978-1-4684-8580-6_2
Piatek A, Dawid A, Gburski Z (2011) The properties of small fullerenol cluster (C60(OH)24)7: computer simulation. Spectrochim Acta A 79:819–823. https://doi.org/10.1016/j.saa.2010.08.059
Gburski Z, Gray CD, Sullivan DE (1983) Information-theory of line-shape in collision-induced absorption. Chem Phys Letters 100:383–386. https://doi.org/10.1016/0009-2614(83)80292-9
Mizuguchi T, Ishizuka R, Matubayasi N (2015) Effect of diffuseness of micelle boundary on the solute distribution upon solubilization. Chem Phys Letters 624:19−23 doi.org/10.1016/j.cplett.2015.02.001
Dawid A, Gburski Z (1999) Interaction-induced light-scattering in xenon cluster: molecular dynamics study. J Molec Struct 482-483:271–276. https://doi.org/10.1016/S0022-2860(98)00668-1
Kale L, Skeel R, Bhandarkar M, Brunner R, Gursoy A, Krawetz N, Phillips J, Shinozaki A, Varadarajan K, Schulten K (1999) NAMD2: greater scalability for parallel molecular 156 dynamics. J Comput Phys 151:283–312. https://doi.org/10.1006/jcph.1999.6201
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kalé L, Schulten K (2005) Scalable molecular dynamics with NAMD. J Comput Chem 26:1781–1802. https://doi.org/10.1002/jcc.20289
Lee S, Tran A, Allsopp M, Lim JB, Hénin J, Klauda JB (2014) CHARMM36 united atom chain model for lipids and surfactants. J Phys Chem B 118:547–556. https://doi.org/10.1021/jp410344g
Humphrey W, Dalke A, Schulten K (1996) VMD: visual molecular dynamics. J Mol Graph Model 14:33–38. https://doi.org/10.1016/0263-7855(96)00018-5
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926–935. https://doi.org/10.1063/1.445869
Dendzik Z, Gorny K, Gburski Z (2009) Cooperative dipolar relaxation of a glycerol molecular cluster in nanoscale confinement-a computer simulation study. J Physics-Condensed Matter 21:425101. https://doi.org/10.1088/0953-8984/21/42/425101
Dawid A, Gorny K, Gburski Z (2011) The structural studies of fullerenol C-60(OH)(24) and nitric oxide mixture in water solvent - MD simulation. Nitric Oxide Biol Chem 25:373–380. https://doi.org/10.1016/j.niox.2011.08.004
Gorny K, Dendzik Z, Raczynski P, Gburski Z (2011) Dynamic properties of propylene glycol confined in ZSM-5 zeolite matrix-a computer simulation study. Solid State Commun 152:8–12. https://doi.org/10.1016/j.ssc.2011.10.020
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Makieła, D., Raczyński, P., Gburski, Z. (2018). The Dynamics of Water Molecules Confined in the Interior of DMPC Phospholipid Reverse Micelle. In: Fesenko, O., Yatsenko, L. (eds) Nanochemistry, Biotechnology, Nanomaterials, and Their Applications. NANO 2017. Springer Proceedings in Physics, vol 214. Springer, Cham. https://doi.org/10.1007/978-3-319-92567-7_6
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