Skip to main content

Nuclei Detection in Cytological Images Using Convolutional Neural Network and Ellipse Fitting Algorithm

  • Conference paper
  • First Online:
Artificial Intelligence and Soft Computing (ICAISC 2018)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 10842))

Included in the following conference series:

Abstract

Morphometric analysis of nuclei play an essential role in cytological diagnostics. Cytological samples contain hundreds or thousands of nuclei that need to be examined for cancer. The process is tedious and time-consuming but can be automated. Unfortunately, segmentation of cytological samples is very challenging due to the complexity of cellular structures. To deal with this problem, we are proposing an approach, which combines convolutional neural network and ellipse fitting algorithm to segment nuclei in cytological images of breast cancer. Images are preprocessed by the colour deconvolution procedure to extract hematoxylin-stained objects (nuclei). Next, convolutional neural network is performing semantic segmentation of preprocessed image to extract nuclei silhouettes. To find the exact location of nuclei and to separate touching and overlapping nuclei, we approximate them using ellipses of various sizes and orientations. They are fitted using the Bayesian object recognition approach. The accuracy of the proposed approach is evaluated with the help of reference nuclei segmented manually. Tests carried out on breast cancer images have shown that the proposed method can accurately segment elliptic-shaped objects.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Spanhol, F.A., Oliveira, S.L.E., Petitjean, C., Heutte, L.: Breast cancer histopathological image classification using convolutional neural networks. In: Proceedings of International Conference on Neural Networks (IJCNN 2016), Vancouver, Canada (2016)

    Google Scholar 

  2. Bembenik, R., Jóźwicki, W., Protaziuk, G.: Methods for mining co-location patterns with extended spatial objects. Int. J. Appl. Math. Comp. Sci. 27(4), 681–695 (2017)

    Article  MathSciNet  Google Scholar 

  3. Qi, J.: Dense nuclei segmentation based on graph cut and convexity–concavity analysis. J. Microsc. 253(1), 42–53 (2014)

    Article  Google Scholar 

  4. Kłeczek, P., Dyduch, G., Jaworek-Korjakowska, J., Tadeusiewicz, R.: Automated epidermis segmentation in histopathological images of human skin stained with hematoxylin and eosin. In: Proceedings of SPIE Medical Imaging, vol. 10140, pp. 10140–10140–19 (2017)

    Google Scholar 

  5. Nurzynska, K., Mikhalkin, A., Piórkowski, A.: CAS: cell annotation software - research on neuronal tissue has never been so transparent. Neuroinformatics 15, 365–382 (2017)

    Article  Google Scholar 

  6. Kowal, M., Filipczuk, P.: Nuclei segmentation for computer-aided diagnosis of breast cancer. Int. J. Appl. Math. Comp. Sci. 24(1), 19–31 (2014)

    Article  Google Scholar 

  7. Chu, J.L., Krzyżak, A.: The recognition of partially occluded objects with support vector machines, convolutional neural networks and deep belief networks. J. Artif. Intell. Soft Comput. Res. 4(1), 5–19 (2014)

    Article  Google Scholar 

  8. Surya, S., Babu, R.V.: TraCount: a deep convolutional neural network for highly overlapping vehicle counting. In: Proceedings of 10th Indian Conference on Computer Vision, Graphics and Image Processing, ICVGIP 2016, pp. 46:1–46:6, New York, NY, USA (2016)

    Google Scholar 

  9. Hu, R.L., Karnowski, J., Fadely, R., Pommier, J.P.: Image segmentation to distinguish between overlapping human chromosomes. In: Proceedings of 31st Conference on Neural Information Processing Systems (NIPS 2017), Long Beach, CA, USA (2017)

    Google Scholar 

  10. Descombes, X.: Multiple objects detection in biological images using a marked point process framework. Methods 115(Supplement C), 2–8 (2017). Image Processing for Biologists

    Article  Google Scholar 

  11. Ruifrok, A.C., Johnston, D.A.: Quantification of histochemical staining by color deconvolution. Anal. Quant. Cytol. Histol. 23(4), 291–299 (2001)

    Google Scholar 

  12. LeCun, Y., Huang, F.J., Bottou, L.: Learning methods for generic object recognition with invariance to pose and lighting. In: Proceedings of IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2004, vol. 2, pp. II–97. IEEE (2004)

    Google Scholar 

  13. van Lieshout, M.N.M.: Markov point processes and their applications in high-level imaging. Bull. Int. Stat. Inst. 56, 559–576 (1995)

    MATH  Google Scholar 

  14. Kowal, M., Korbicz, J.: Marked point process for nuclei detection in breast cancer microscopic images. In: Augustyniak, P., Maniewski, R., Tadeusiewicz, R. (eds.) PCBBE 2017. AISC, vol. 647, pp. 230–241. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-66905-2_20

    Chapter  Google Scholar 

Download references

Acknowledgement

The research was supported by National Science Centre, Poland (2015/17/B/ST7/03704).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Marek Kowal .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer International Publishing AG, part of Springer Nature

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Kowal, M., Żejmo, M., Korbicz, J. (2018). Nuclei Detection in Cytological Images Using Convolutional Neural Network and Ellipse Fitting Algorithm. In: Rutkowski, L., Scherer, R., Korytkowski, M., Pedrycz, W., Tadeusiewicz, R., Zurada, J. (eds) Artificial Intelligence and Soft Computing. ICAISC 2018. Lecture Notes in Computer Science(), vol 10842. Springer, Cham. https://doi.org/10.1007/978-3-319-91262-2_15

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-91262-2_15

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-91261-5

  • Online ISBN: 978-3-319-91262-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics