Abstract
Red clover (Trifolium pratense L.) is a highly adaptable species, with a wide geographic distribution. At the genetic level, wild ecotypes possess high variability, which enables them to adapt rapidly to diverse environments. This variation can be identified, via molecular techniques, and used to determine the differences between populations that may otherwise be indistinguishable. The results presented here are part of a wider study undertaken with a view to assess the available genetic diversity and use it to facilitate future introgression of useful traits into red clover breeding populations.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Ahsyee RS, Vasiljevic S, Calic I, Zoric M, Karagic D, Surlan-Momirovic G (2014) Genetic diversity in red clover (Trifolium pratense L.) using SSR markers. Genetika-Belgrade 46(3):949–961. https://doi.org/10.2298/gensr1403949a
De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon A, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KFX, Rössner S, Yates S, Webb KJ, Donnison IS, Oldroyd GED, Wing RA, Caccamo M, Powell W, Abberton MT, Skøt L (2015) Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. Sci Rep 5. https://doi.org/10.1038/srep17394
Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE (2011) A robust, simple Genotyping-by-Sequencing (GBS) approach for high diversity species. PLoS ONE 6(5). https://doi.org/10.1371/journal.pone.0019379
Foll M, Gaggiotti OE (2008) A genome scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180:977–993
Frame J, Charlton JFL, Laidlaw AS (1998) Temperate forage legumes. CAB International, Wallingford
Glaubitz JC, Casstevens TM, Lu F, Harriman J, Elshire RJ, Sun Q, Buckler ES (2014) TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. PLoS ONE 9(2). https://doi.org/10.1371/journal.pone.0090346
Kjærgaard T (2003) A plant that changed the world: the rise and fall of clover 1000–2000. Landsc Res 28:41–49
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754–1760. https://doi.org/10.1093/bioinformatics/btp324
Rumball W, Keogh RG, Miller JE (2003) ‘Crossway’ and ‘Grasslands Broadway’ red clovers (Trifolium pratense L.). N Z J Agric Res 46(1):57–59
Stucki S, Orozco-terWengel P, Forester BR, Duruz S, Colli L, Masembe C, Negrini R, Landguth E, Jones MR, Bruford MW, Taberlet P, Joost S (2016) High performance computation of landscape genomic models including local indicators of spatial association. Mol Ecol Resourc. https://doi.org/10.1111/1755-0998.12629
Taylor NL, Quesenberry KH (1996) Red clover science. Kluwer Academic Publishers, Dordrecht
RCD Team (2014) R: a language and environment for statistical computing, Vienna, Austria
Vavilov NI (2009) On the eastern centers of cultivated plants. Cambridge University Press, Cambridge
Acknowledgements
This project is funded by BBSRC grants BB/L023563/1 to IBERS and BB/L022257/1 to Earlham, and by Germinal Holdings.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer International Publishing AG, part of Springer Nature
About this paper
Cite this paper
Jones, C. et al. (2018). Population Structure of Red Clover Ecotypes Collected from Europe and Asia. In: Brazauskas, G., Statkevičiūtė, G., Jonavičienė, K. (eds) Breeding Grasses and Protein Crops in the Era of Genomics. Springer, Cham. https://doi.org/10.1007/978-3-319-89578-9_4
Download citation
DOI: https://doi.org/10.1007/978-3-319-89578-9_4
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-89577-2
Online ISBN: 978-3-319-89578-9
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)