Abstract
This is the first of two chapters that apply predictive analytics to two very different risk prediction problems. As in the previous two chapters, the challenge in this one is to estimate human health risks from a pathogen in swine using a combination of plausible conservative estimates of relevant risk factors and probabilistic simulation. However, our focus now shifts to predicting how risks would change if some fraction of swine were shifted from totally confined production systems to more humane open systems. Predicting how interventions change risk requires a causal model, as discussed in Chap. 1. As in Chaps. 5 and 6, a simple product-of-factors framework is again suitable (see Eq. 7.5). Instead of the terms describing propagation of changes along successive links in a causal chain, with the change in the quantity at each step being equal to a sensitivity or slope factor times the change in its predecessor, many of the factors in this chapter are estimated attribution fractions. These describe the fraction of relevant deaths or illnesses per year in the population due to (i.e., attributed to) and caused by infection with a foodborne pathogen; the fraction of them that are attributed specifically to pork consumption, and so forth. Unlike the attributable risk estimates or attributable fractions criticized in Chap. 2, which were derived purely from statistical associations, in this application the causal agent of disease, T. Gondii, is known and can be measured. Predictions for effects of interventions are therefore grounded in causal attribution calculations that can be compared to available data on prevalence and infectivity of the relevant causal agent. Chapter 8 will then turn to a pure prediction problem: how well the entries in one column in a table (indicating in vivo carcinogenicity of chemicals, or lack of it, in rodents) can be predicted from entries in other columns, representing results of relatively inexpensive high-throughput screening (HTS) assays. No causal model is required for this task: predictive analytics algorithms alone suffice.
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References
Batz MB, Hoffmann S, Morris JG Jr (2012) Ranking the disease burden of 14 pathogens in food sources in the United States using attribution data from outbreak investigations and expert elicitation. J Food Prot 75(7):1278–1291
Cook AJC, Holliman R, Gilbert RE, Buffolano W, Zufferey J, Petersen E, Jenum PA, Foulon W, Semprini AE, Dunn DT (2000) Sources of toxoplasma infection in pregnant women: European multicentre case-control study. Commentary: Congenital toxoplasmosis—further thought for food. BMJ 321(7254):142–147
Cox LA Jr, Popken DA (2014) Quantitative risk assessment of human MRSA risks from swine. Risk Anal 39(9):1639–1650
Cox LA Jr, Popken DA (2010) Assessing potential human health hazards and benefits from subtherapeutic antibiotics in the United States: tetracyclines as a case study. Risk Anal 30(3):432–457
Cox LA Jr, Popken DA, Mathers J (2009) Human health risk assessment of penicillin/aminopenicillin resistance in enterococci due to penicillin use in food animals. Risk Anal 29(6):796–805
Cressey P, Lake R (2005) Ranking food safety risks: development of NZFSA policy 2004–2005. Institute of Environmental Science and Research (online report). Available at http://www.foodsafety.govt.nz/elibrary/industry/Ranking_Food_Safety_Risks-Science_Research.pdf. Accessed 13 Feb 2013
Davies PR (2011) Intensive swine production and pork safety. Foodborne Pathog Dis 8(2):189–201
Davies PR, Morrow WEM, Gamble HR, Deen J, Patton S (1998) Prevalence of antibodies to Toxoplasma gondii and Trichinella spiralis in finishing swine raised in different production systems in North Carolina, USA. Prev Vet Med 36(1):67–76
Davis R (2008) Teaching project simulation in Excel using PERT-Beta distributions. INFORMS Trans Educ 8(3):139–148
Dubey JP (2009) Toxoplasmosis in pigs—the last 20 years. Vet Parasitol 164(2–4):89–103
Dubey JP (2013) Swine toxoplasmosis. Veterinary Division - Animal Health Programs (website). Available at http://www.ncagr.gov/vet/FactSheets/Toxoplasmosis.htm. Accessed 25 Feb 2013
Dubey JP, Leighty JC, Beal VC, Anderson WR, Andrews CD, Thulliez P (1991) National seroprevalence of Toxoplasma gondii in pigs. J Parasitol 77(4):517–521
Dubey JP, Gamble HR, Hill D, Sreekumar C, Romand S, Thuilliez P (2002) High prevalence of viable Toxoplasma gondii infection in market weight pigs from a farm in Massachusetts. J Parasitol 88:1234–1238
Dubey JP, Hill DE, Sundar N, Velmurugan GV, Bandini LA, Kwok OCH, Pierce V, Kelly K, Dulin M, Thulliez P, Iwueke C, Su C (2008) Endemic toxoplasmosis in pigs on a farm in Maryland: isolation and genetic characterization of Toxoplasma gondii. J Parasitol 94:36–41
Dubey JP, Hill DE, Rozeboom DW, Rajendran C, Choudhary S, Ferreira LR, Kwok OCH, Su C (2012) High prevalence and genotypes of Toxoplasma gondii isolated from organic pigs in northern USA. Vet Parasitol 188(1–2):14–18
Gebreyes WA, Bahnson PB, Funk JA, McKean J, Patchanee P (2008) Seroprevalence of Trichinella, Toxoplasma, and Salmonella in antimicrobial-free and conventional swine production systems. Foodborne Pathog Dis 5(2):199–203
van der Giessen J, Fonville M, Bouwknegt M, Langelaar M, Vollema A (2007) Seroprevalence of Trichinella spiralis and Toxoplasma gondii in pigs from different housing systems in The Netherlands. Vet Parasitol 148(3–4):371–374
Guerina NG, Hsu H-W, Meissner HC, Maguire JH, Lynfield R, Stechenberg B, Abroms I, Pasternack MS, Hoff R, Eaton RB, Grady GF (1994) Neonatal serologic screening and early treatment for congenital Toxoplasma gondii infection. N Engl J Med 330(26):1858–1863
Hamilton B, Sutton PD (2012) Recent trends in births and fertility rates through June 2012 (website). Available at http://www.cdc.gov/nchs/data/hestat/births_fertility_june_2012/births_june_2012.pdf. Accessed 3 Jan 2013
Havelaar AH, Galindo AV, Kurowicka D, Cooke RM (2008) Attribution of foodborne pathogens using structured expert elicitation. Foodborne Pathog Dis 5(5):649–659
Hays SM (1996) The cat/pig Toxoplasmosis connection. Agric Res 44(2):8–9
Hill DE, Dubey JP (2013) Toxoplasma gondii prevalence in farm animals in the United States. Int J Parasitol 43(2):107–113
Hill DE, Haley C, Wagner B, Gamble HR, Dubey JP (2010) Seroprevalence of and risk factors for Toxoplasma gondii in the US swine herd using sera collected during the National Animal Health Monitoring Survey (Swine 2006). Zoonoses Public Health 57(1):53–59
Hill DE, Baroch J, Swafford SR, Fournet VM, Pyburn DG, Schmit BB, Gamble HR, Feidas H, Theodoropoulos G (2014) Surveillance of feral swine for Trichinella spp. and Toxoplasma gondii in the US and host-related factors associated with infection. Vet Parasitol 205:653–655
Hoffmann S, Batz MB, Morris JG Jr (2012) Annual cost of illness and quality-adjusted life year losses in the United States due to 14 foodborne pathogens. J Food Prot 75(7):1292–1302
Jolie R, Backstrom L, Pinckney R, Olson L (1998) Ascarid infection and respiratory health in feeder pigs raised on pasture or in confinement. Swine Health Prod 6(3):115–120
Jones JL, Kruszon-Moran D, Wilson M, McQuillan G, Navin T, McAuley JB (2001) Toxoplasma gondii infection in the United States: seroprevalence and risk factors. Am J Epidemiol 154(4):357–365
Jones JL, Kruszon-Moran D, Sanders-Lewis K, Wilson M (2007) Toxoplasma gondii Infection in the United States, 1999–2004, Decline from the Prior Decade. Am J Trop Med Hyg 77(3):405–410
Kijlstra A, Eissen OA, Cornelissen J, Munniksma K, Eijck I, Kortbeek T (2004) Toxoplasma gondii infection in animal-friendly pig production systems. Invest Ophthalmol Vis Sci 45(9):3165–3169
Kijlstra A, Meerburg BB, Bos P (2009) Food safety in free-range and organic livestock systems: risk management and responsibility. J Food Prod 72(12):2629–2637
McKean J, O’Conner A, Pyburn D, Beary J (2009) Survey of market swine to determine prevalence of Toxoplasma in meat juice samples from selected abattoirs. In: 8th international symposium: epidemiology and control of foodborne pathogens in pork, Quebec City, Canada
Mead PS, Slutsker L, Dietz V, McCaig LF, Bresee JS, Shapiro C, Griffin PM, Tauxe RV (1999) Food-related illness and death in the United States. Emerg Infect Dis 5(5):607–625
O’Brien AM, Hanson BM, Farina SA, Wu JY, Simmering JE, Wardyn SE, Forshey BM, Kulick ME, Wallinga DB, Smith TC (2012) MRSA in conventional and alternative retail pork products. PLoS One 7(1):e30092
Patton S, Zimmerman J, Roberts T, Faulkner C, Diderrich V, Assadi-Rad A, Davies P, Kliebenstein J (1996) Seroprevalence of Toxoplasma gondii in hogs in the National Animal Health Monitoring System (NAHMS). J Eukaryot Microbiol 43(5):121S
Patton S, Faulkner C, Anderson A, Smedley K, Buch E (2002) Toxoplasma gondii Infection in sows and market-weight pigs in the United States and it potential impact on consumer demand for pork. National Pork Board Report NPB# 00-130 (online report)
Roepstorff A, Mejer H, Nejsum P, Thamsborg S (2011) Helminth parasites in pigs: new challenges in pig production and current research highlights. Vet Parasitol 180(1–2):72–81
Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, Jones JL, Griffin PM (2011) Foodborne illness acquired in the United States–major pathogens. Emerg Infect Dis 17(1): 7–15. Also available at: http://wwwnc.cdc.gov/eid/article/17/1/p1-1101_article.htm. Accessed 26 Feb 2014
Tenter A, Heckeroth A, Weiss L (2000) Toxiplasma gondii: from animals to humans. Int J Parasitol 30(12–13):1217–1258
Thomas MK, Murray R, Flockhart L, Pintar K, Pollari F, Fazil A, Nesbitt A, Marshall B (2013) Foodborne Pathog Dis 10(7):639–648
USDA-APHIS (2008) Biosecurity on U.S. Swine Sites. USDA-APHIS (online report). Available at http://www.aphis.usda.gov/animal_health/nahms/swine/downloads/swine2006/Swine2006_is_biosecurity.pdf. Accessed 2 Jan 2013
USDA-APHIS-VS-CEAH (2011) Seroprevalence of Trichinella and Toxoplasma in US grower/finisher pigs, 2006. USDA-APHIS (online report). Available at http://www.aphis.usda.gov/animal_health/nahms/swine/downloads/swine2006/Swine2006_is_trich.pdf. Accessed 31 Jan 2013
USDA-ERS (2012) Table 2. U.S. certified organic farmland acreage, livestock numbers, and farm operations. US Dept of Agriculture, Economic Research Service (online file). Available at http://www.ers.usda.gov/datafiles/Organic_Production/National_Tables_/Farmlandlivestockandfarm.xls. Accessed 23 Feb 2014
USDA-NASS (2012) Meat animals production, disposition, and income: 2011 summary. USDA-NASS (online database). Available at http://www.ers.usda.gov/data-products/agricultural-baseline-database.aspx. Accessed 22 Feb 2014
Vaillant V, de Valk H, Ancelle T, Colin P, Delmas MC, Dufour B, Pouillot R, Le Strat Y, Weinbreck P, Jougla E, Desenclos JC (2005) Foodborne infections in France. Foodborne Pathog Dis 2(3):221–232
Weese J, Zwambag A, Rosendal T, Reid-Smith R, Friendship R (2011) Longitudinal investigation of methicillin-resistant Staphylococcus aureus in piglets. Zoonoses Public Health 58(4):238–243
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Cox Jr., L.A., Popken, D.A., Sun, R.X. (2018). Attributive Causal Modeling: Quantifying Human Health Risks Caused by Toxoplasmosis from Open System Production of Swine. In: Causal Analytics for Applied Risk Analysis. International Series in Operations Research & Management Science, vol 270. Springer, Cham. https://doi.org/10.1007/978-3-319-78242-3_7
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