Skip to main content
SpringerLink
Log in

An Overview of Fungal Applications in the Valorization of Lignocellulosic Agricultural By-Products: The Case of Two-Phase Olive Mill Wastes

  • Chapter
  • First Online:
Mycoremediation and Environmental Sustainability

Part of the book series: Fungal Biology ((FUNGBIO))

Abstract

DOR (dry mill olive residue) is an agricultural by-product generated during two-phase olive oil extraction. It is a microtoxic and phytotoxic phenolic-rich lignocellulosic residue and is produced in high amounts in Mediterranean countries. Several techniques have been proposed for its valorization. Agaricomycetes are one of the most efficient lignin-modifying enzyme (LME) producers on Earth (e.g. laccases, peroxidases or the novel peroxygenases). The secretion of these enzymes varies according to the specific strain and also depends on other factors such as the presence of certain elicitors in the medium, like lignocellulosic materials or phenols, which may be crucial to stimulate LME secretion. Due to the enzymatic capability of fungi, numerous studies have been performed in order to valorize the DOR, such as its recent use as a medium for enzyme production or organic soil amendment. An improved valorization of these by-products and a better understanding of fungal enzyme production could lead to the development of biorefineries that utilize various components in biomass and their intermediates, thus maximizing the value derived from biomass feedstock. In this chapter, we summarize some studies performed on this topic (mainly based on the usage of white-rot fungi in the transformation of DOR), and we discuss possible trends, challenges and future prospects for the use of fungi in an environmentally sustainable scenario.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution
Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Abbreviations

AA:

Auxiliary activity

AAO:

Aryl-alcohol oxidase

ADOR:

Aqueous extract of DOR

AO:

Alcohol oxidases

CAZy:

Carbohydrate active enzymes

CBM:

Carbohydrate-binding modules

CDH:

Cellobiose dehydrogenase

CE:

Carbohydrate esterase

CiP:

Coprinopsis cinerea peroxidase

CMC-ase:

Carboxymethylcellulase

CytP450:

Cytochrome P450 monooxygenases

DyP:

Dye-decolorizing peroxidases

DOR:

Dry olive mill residue

GH:

Glycoside hydrolase

GLOX:

Glucose oxidase

GLX:

Glyoxal oxidase

GR:

Glutathione reductase

GST:

Glutathione-S-transferase

GT:

Glycosyltransferase

Lac:

Laccase

LiP:

Lignin peroxidase

LME:

Lignin-modifying enzyme

LPMO:

Lytic polysaccharide monooxygenase

MnP:

Manganese peroxidase

OXO:

Oxalate oxidase

PL:

Polysaccharide lyase

PODs:

Class II peroxidases

ROS:

Reactive oxygen species

SOD:

Superoxide dismutase

SF:

Submerged fermentation

SSF:

Solid-state fermentation

TPOMW:

Two- phase olive mill waste

UPO:

Unspecific peroxygenase

VP:

Versatile peroxidase

WRF:

White-rot fungi

References

  • Alburquerque JA, Gonzálvez J, Garcia D, Cegarra J (2004) Agrochemical characterisation of “alperujo”, a solid by-product of the two-phase centrifugation method for olive oil extraction. Bioresour Technol 91(2):195–200

    Article  PubMed  CAS  Google Scholar 

  • Anh DH, Ullrich R, Benndorf D, Svatoś A, Muck A, Hofrichter M (2007) The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation. App Environ Microbiol 73(17):5477–5485

    Article  CAS  Google Scholar 

  • Aranda E, Sampedro I, Ocampo J, García-Romera I (2004) Contribution of hydrolytic enzymes produced by saprophytic fungi to the decrease in plant toxicity caused by water-soluble substances in olive mill dry residue. Appl Microbiol Biotechnol 64(1):132–135

    Article  PubMed  CAS  Google Scholar 

  • Aranda E, Sampedro I, Ocampo JA, García-Romera I (2006) Phenolic removal of olive-mill dry residues by laccase activity of white-rot fungi and its impact on tomato plant growth. Int Biodeterior Biodegrad 58(3–4):176–179

    Article  CAS  Google Scholar 

  • Aranda E, García-Romera I, Ocampo JA, Carbone V, Mari A, Malorni A, Sannino F, De Martino A, Capasso R (2007) Chemical characterization and effects on Lepidium sativum of the native and bioremediated components of dry olive mill residue. Chemosphere 69(2):229–239

    Article  PubMed  CAS  Google Scholar 

  • Aranda E, Sampedro I, García-Sanchez M, Reina R, Arriagada C, Ocampo JA, García-Romera I (2012) Reduced dry olive residue phytotoxicity in the field by the combination of physical and biological treatments. J Soil Sci Plant Nutr 12(4):631–635

    Google Scholar 

  • Araújo M, Pimentel FB, Alves RC, Oliveira MBP (2015) Phenolic compounds from olive mill wastes: health effects, analytical approach and application as food antioxidants. Trends Food Sci Technol 45(2):200–211

    Article  CAS  Google Scholar 

  • Arnstadt T, Hoppe B, Kahl T, Kellner H, Krüger D, Bässler C, Bauhus J, Hofrichter M (2016) Patterns of laccase and peroxidases in coarse woody debris of Fagus sylvatica, Picea abies and Pinus sylvestris and their relation to different wood parameters. Eur J Forest Res 135(1):109–124

    Article  CAS  Google Scholar 

  • Baldrian P (2006) Fungal laccases-occurrence and properties. FEMS Microbiol Rev 30(2):215–242

    Article  PubMed  CAS  Google Scholar 

  • Bertozzi CR, Kiessling LL (2001) Chemical glycobiology. Science 291(5512):2357–2364

    Article  PubMed  CAS  Google Scholar 

  • Biely P (2012) Microbial carbohydrate esterases deacetylating plant polysaccharides. Biotechnol Adv 30(6):1575–1588

    Article  PubMed  CAS  Google Scholar 

  • Cadimaliev DA, Revin VV, Atykyan NA, Samuilov VD (2005) Extracellular oxidases of the lignin-degrading fungus Panus tigrinus. Biokhimiya 70(6):850–854

    Google Scholar 

  • Camarero S, Sarkar S, Ruiz-Dueñas FJ, Martínez MJ, Martínez AT (1999) Description of a versatile peroxidase involved in the natural degradation of lignin that has both manganese peroxidase and lignin peroxidase substrate interaction sites. J Biol Chem 274(15):10324–10330

    Article  PubMed  CAS  Google Scholar 

  • Cambria MT, Ragusa S, Calabrese V, Cambria A (2011) Enhanced laccase production in white-rot fungus Rigidoporus lignosus by the addition of selected phenolic and aromatic compounds. Appl Biochem Biotechnol 163(3):415–422

    Article  PubMed  CAS  Google Scholar 

  • Carbajo JM, Junca H, Terrón MC, González T, Yagüe S, Zapico E, González AE (2002) Tannic acid induces transcription of laccase gene cglcc1 in the white-rot fungus Coriolopsis gallica. Can J Microbiol 48(12):1041–1047

    Article  PubMed  CAS  Google Scholar 

  • Choinowski T, Blodig W, Winterhalter KH, Piontek K (1999) The crystal structure of lignin peroxidase at 1.70 Å resolution reveals a hydroxy group on the C(β) of tryptophan 171: a novel radical site formed during the redox cycle. J Mol Biol 286(3):809–827

    Article  PubMed  CAS  Google Scholar 

  • Collins PJ, Dobson ADW (1997) Regulation of laccase gene transcription in Trametes versicolor. Appl Environ Microbiol 63(9):3444–3450

    PubMed  PubMed Central  CAS  Google Scholar 

  • Coradetti ST, Craig JP, Xiong Y, Shock T, Tian C, Glass NL (2012) Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. Proc Natl Acad Sci U S A 109(19):7397–7402

    Article  PubMed  PubMed Central  Google Scholar 

  • Cosgrove DJ (2005) Growth of the plant cell wall. Nat Rev Mol Cell Biol 6(11):850–861

    Article  PubMed  CAS  Google Scholar 

  • Daniel G (2003) Microview of wood under degradation by bacteria and fungi. ACS symposium series. In: Goodell B, Nicholas DD, Schultz TP (eds) Wood Deterioration and Preservation: Advances in Our Changing World. ACS Journals pp 34–72

    Google Scholar 

  • Dermeche S, Nadour M, Larroche C, Moulti-Mati F, Michaud P (2013) Olive mill wastes: biochemical characterizations and valorization strategies. Process Biochem 48(10):1532–1552

    Article  CAS  Google Scholar 

  • Di Bene C, Pellegrino E, Debolini M, Silvestri N, Bonari E (2013) Short- and long-term effects of olive mill wastewater land spreading on soil chemical and biological properties. Soil Biol Biochem 56:21–30

    Article  CAS  Google Scholar 

  • Díaz R, Saparrat MCN, Jurado M, García-Romera I, Ocampo JA, Martínez MJ (2010) Biochemical and molecular characterization of Coriolopsis rigida laccases involved in transformation of the solid waste from olive oil production. Appl Microbiol Biotechnol 88(1):133–142

    Article  PubMed  CAS  Google Scholar 

  • Dong JL, Zhang YZ (2004) Purification and characterization of two laccase isoenzymes from a ligninolytic fungus Trametes gallica. Prep Biochem Biotech 34:179–194

    Article  CAS  Google Scholar 

  • Eudes A, Liang Y, Mitra P, Loqué D (2014) Lignin bioengineering. Curr Opin Biotechnol 26:189–198

    Article  PubMed  CAS  Google Scholar 

  • Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS (2015) Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. Fungal Genet Biol 76:78–92

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • García-Sánchez M, Garrido I, IDJ C, Casero PJ, Espinosa F, García-Romera I, Aranda E (2012) Defence response of tomato seedlings to oxidative stress induced by phenolic compounds from dry olive mill residue. Chemosphere 89(6):708–716

    Article  PubMed  CAS  Google Scholar 

  • García-Sánchez M, Palma JM, Ocampo JA, García-Romera I, Aranda E (2014a) Arbuscular mycorrhizal fungi alleviate oxidative stress induced by ADOR and enhance antioxidant responses of tomato plants. J Plant Physiol 171(6):421–428

    Article  PubMed  CAS  Google Scholar 

  • García-Sánchez M, Paradiso A, García-Romera I, Aranda E, de Pinto MC (2014b) Bioremediation of dry olive-mill residue removes inhibition of growth induced by this waste in tomato plants. Int J Environ Sci Technol 11(1):21–32

    Article  CAS  Google Scholar 

  • Garrido I, García-Sánchez M, Casimiro I, Casero PJ, García-Romera I, Ocampo JA, Espinosa F (2012) Oxidative stress induced in sunflower seedling roots by aqueous dry olive-mill residues. PLoS One 7(9):e46137

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Girard V, Dieryckx C, Job C, Job D (2013) Secretomes: the fungal strike force. Proteomics 13(3–4):597–608

    Article  PubMed  CAS  Google Scholar 

  • Gröbe G, Ullrich R, Pecyna MJ, Kapturska D, Friedrich S, Hofrichter M, Scheibner K (2011) High-yield production of aromatic peroxygenase by the agaric fungus Marasmius rotula. AMB Express 1(1):1–11

    Article  CAS  Google Scholar 

  • Hasunuma T, Okazaki F, Okai N, Hara KY, Ishii J, Kondo A (2013) A review of enzymes and microbes for lignocellulosic biorefinery and the possibility of their application to consolidated bioprocessing technology. Bioresour Technol 135:513–522

    Article  PubMed  CAS  Google Scholar 

  • Hemsworth GR, Henrissat B, Davies GJ, Walton PH (2014) Discovery and characterization of a new family of lytic polysaccharide monooxygenases. Nat Chem Biol 10(2):122–126

    Article  PubMed  CAS  Google Scholar 

  • Hildén K, Martínez AT, Hatakka A, Lundell T (2005) The two manganese peroxidases Pr-MnP2 and Pr-MnP3 of Phlebia radiata, a lignin-degrading basidiomycete, are phylogenetically and structurally divergent. Fungal Genet Biol 42:403–419

    Article  PubMed  CAS  Google Scholar 

  • Hildén K, Mäkelä MR, Steffen KT, Hofrichter M, Hatakka A, Archer DB, Lundell TK (2014) Biochemical and molecular characterization of an atypical manganese peroxidase of the litter-decomposing fungus Agrocybe praecox. Fungal Genet Biol 72:131–136

    Article  PubMed  CAS  Google Scholar 

  • Hofrichter M, Ullrich R, Pecyna MJ, Liers C, Lundell T (2010) New and classic families of secreted fungal heme peroxidases. Appl Microbiol Biotechnol 87(3):871–897

    Article  PubMed  CAS  Google Scholar 

  • Hofrichter M, Kellner H, Pecyna MJ, Ullrich R (2015) Fungal unspecific peroxygenases: heme-thiolate proteins that combine peroxidase and cytochrome P450 properties, Monooxygenase, Peroxidase and Peroxygenase Properties and Mechanisms of Cytochrome P450. In: Hrycay EG, Bandiera SM (eds) Springer, Cham, pp 341–368

    Google Scholar 

  • Hovorka M, Száková J, García-Sánchez M, Acebal MB, García-Romera I, Tlustoš P (2016) Risk element sorption/desorption characteristics of dry olive residue: a technique for the potential immobilization of risk elements in contaminated soils. Environ Sci Pollut Res 23(22):22614–22622

    Article  CAS  Google Scholar 

  • Johansson T, Nyman PO (1993) Isozymes of lignin peroxidase and manganese (II) peroxidase from the white-rot basidiomycete Trametes versicolor: I. Isolation of enzyme forms and characterization of physical and catalytic properties. Arch Biochem Biophys 300(1):49–56

    Article  PubMed  CAS  Google Scholar 

  • Johjima T, Ohkuma M, Kudo T (2003) Isolation and cDNA cloning of novel hydrogen peroxide-dependent phenol oxidase from the basidiomycete Termitomyces albuminosus. Appl Microbiol Biotechnol 61(3):220–225

    Article  PubMed  CAS  Google Scholar 

  • Jung S, Song Y, Kim HM, Bae HJ (2015) Enhanced lignocellulosic biomass hydrolysis by oxidative lytic polysaccharide monooxygenases (LPMOs) GH61 from Gloeophyllum trabeum. Enzyme Microb Technol 77:38–45

    Article  PubMed  CAS  Google Scholar 

  • Justino CIL, Pereira R, Freitas AC, Rocha-Santos TAP, Panteleitchouk TSL, Duarte AC (2012) Olive oil mill wastewaters before and after treatment: a critical review from the ecotoxicological point of view. Ecotoxicology 21(2):615–629

    Article  PubMed  CAS  Google Scholar 

  • Kellner H, Luis P, Pecyna MJ, Barbi F, Kapturska D, Kruger D, Zak DR, Marmeisse R, Vandenbol M, Hofrichter M (2014) Widespread occurrence of expressed fungal secretory peroxidases in forest soils. PLoS One 9(4):e95557

    Article  PubMed  PubMed Central  Google Scholar 

  • Keyser P, Kirk T, Zeikus J (1978) Ligninolytic enzyme system of Phanaerochaete chrysosporium: synthesized in the absence of lignin in response to nitrogen starvation. J Bacteriol 135(3):790–797

    PubMed  PubMed Central  CAS  Google Scholar 

  • Kim SJ, Shoda M (1999) Purification and characterization of a novel peroxidase from Geotrichum candidum Dec 1 involved in decolorization of dyes. Appl Environ Microbiol 65(3):1029–1035

    PubMed  PubMed Central  CAS  Google Scholar 

  • Kües U (2015) Fungal enzymes for environmental management. Curr Opin Biotechnol 33:268–278

    Article  PubMed  CAS  Google Scholar 

  • Kuhad RC, Singh A (1993) Lignocellulose biotechnology. Current and future prospects. Crit Rev Biotechnol 13(2):151–172

    Article  CAS  Google Scholar 

  • Lechner B, Papinutti V (2006) Production of lignocellulosic enzymes during growth and fruiting of the edible fungus Lentinus tigrinus on wheat straw. Process Biochem 41(3):594–598

    Article  CAS  Google Scholar 

  • Leitner C, Hess J, Galhaup C, Ludwig R, Nidetzky B, Kulbe KD, Haltrich D (2002) Purification and characterization of a laccase from the white-rot fungus Trametes multicolor. Appl Biochem Biotech-A Enzyme Eng Biotechnol 98–100:497–507

    Article  Google Scholar 

  • Liers C, Ullrich R, Steffen K, Hatakka A, Hofrichter M (2006) Mineralization of 14C-labelled synthetic lignin and extracellular enzyme activities of the wood-colonizing ascomycetes Xylaria hypoxylon and Xylaria polymorpha. Appl Microbiol Biotechnol 69(5):573–579

    Article  PubMed  CAS  Google Scholar 

  • Liers C, Ullrich R, Pecyna M, Schlosser D, Hofrichter M (2007) Production, purification and partial enzymatic and molecular characterization of a laccase from the wood-rotting ascomycete Xylaria polymorpha. Enzym Microb Technol 41(6):785–793

    Article  CAS  Google Scholar 

  • Liers C, Bobeth C, Pecyna M, Ullrich R, Hofrichter M (2010) DyP-like peroxidases of the jelly fungus Auricularia auricula-judae oxidize nonphenolic lignin model compounds and high-redox potential dyes. Appl Microbiol Biotechnol 85(6):1869–1879

    Article  PubMed  CAS  Google Scholar 

  • Liers C, Arnstadt T, Ullrich R, Hofrichter M (2011) Patterns of lignin degradation and oxidative enzyme secretion by different wood and litter-colonizing basidiomycetes and ascomycetes grown on beech-wood. FEMS Microbiol Ecol 78(1):91–102

    Article  PubMed  CAS  Google Scholar 

  • Liers C, Pecyna MJ, Kellner H, Worrich A, Zorn H, Steffen KT, Hofrichter M, Ullrich R (2013) Substrate oxidation by dye-decolorizing peroxidases (DyPs) from wood- and litter-degrading agaricomycetes compared to other fungal and plant heme-peroxidases. Appl Microbiol Biotechnol 97(13):5839–5849

    Article  PubMed  CAS  Google Scholar 

  • Liese W (1970) Ultrastructural aspects of woody tissue disintegration. Annu Rev Phytopathol 8(1):231–258

    Article  Google Scholar 

  • Linares A (2003) Detoxification of semisolid olive-mill wastes and pine-chip mixtures using Phanerochaete flavido-alba. Chemosphere 51(9):887–891

    Article  PubMed  CAS  Google Scholar 

  • Linde D, Ruiz-Dueñas FJ, Fernández-Fueyo E, Guallar V, Hammel KE, Pogni R, Martínez AT (2015) Basidiomycete DyPs: genomic diversity, structural–functional aspects, reaction mechanism and environmental significance. Arch Biochem Biophys 574:66–74

    Article  PubMed  CAS  Google Scholar 

  • Lombard V, Bernard T, Rancurel C, Brumer H, Coutinho PM, Henrissat B (2010) A hierarchical classification of polysaccharide lyases for glycogenomics. Biochem J 432(3):437–444

    Article  PubMed  CAS  Google Scholar 

  • Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B (2014) The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res 42(D1):D490–D4D5

    Article  PubMed  CAS  Google Scholar 

  • Lopes V, Farias M, Belo I, Coelho M (2016) Nitrogen sources on TPOMW valorization through solid state fermentation performed by Yarrowia lipolytica. Braz J Chem Eng 33(2):261–270

    Article  CAS  Google Scholar 

  • López-Piñeiro A, Albarrán A, Nunes JMR, Barreto C (2008) Short and medium-term effects of two-phase olive mill waste application on olive grove production and soil properties under semiarid mediterranean conditions. Bioresour Technol 99(17):7982–7977

    Article  PubMed  CAS  Google Scholar 

  • Lundell T (1993) Ligninolytic system of the white-rot fungus Phlebia radiata: lignin model compound studies. FAO [T. Lundell]

    Google Scholar 

  • Lyashenko AV, Bento I, Zaitsev VN, Zhukhlistova NE, Zhukova YN, Gabdoulkhakov AG, Morgunova EY, Voelter W, Kachalova GS, Stepanova EV, Koroleva OV, Lamzin VS, Tishkov VI, Betzel C, Lindley PF, Mikhailov AM (2006) X-ray structural studies of the fungal laccase from Cerrena maxima. J Biol Inorg Chem 11(8):963–973

    Article  PubMed  CAS  Google Scholar 

  • Mac Donald MJ, Paterson A, Broda P (1984) Possible relationship between cyclic AMP and idiophasic metabolism in the white rot fungus Phanerochaete chrysosporium. J Bacteriol 160(1):470–472

    CAS  Google Scholar 

  • Madhavi V, Lele SS (2009) Laccase: properties and applications. BioResources 4(4):1694–1717

    Google Scholar 

  • Marx IJ, Van Wyk N, Smit S, Jacobson D, Viljoen-Bloom M, Volschenk H (2013) Comparative secretome analysis of Trichoderma asperellum S4F8 and Trichoderma reesei Rut C30 during solid-state fermentation on sugarcane bagasse. Biotechnol Biofuels 6(1):1

    Article  CAS  Google Scholar 

  • Mateo JJ, Maicas S (2015) Valorization of winery and oil mill wastes by microbial technologies. Food Res Int 73:13–25

    Article  CAS  Google Scholar 

  • McKendry P (2002) Energy production from biomass (part 1): overview of biomass. Bioresour Technol 83(1):37–46

    Article  PubMed  CAS  Google Scholar 

  • Medie FM, Davies GJ, Drancourt M, Henrissat B (2012) Genome analyses highlight the different biological roles of cellulases. Nat Rev Microbiol 10(3):227–234

    Article  CAS  Google Scholar 

  • Michniewicz A, Ullrich R, Ledakowicz S, Hofrichter M (2006) The white-rot fungus Cerrena unicolor strain 137 produces two laccase isoforms with different physico-chemical and catalytic properties. Appl Microbiol Biotechnol 69(6):682–688

    Article  PubMed  CAS  Google Scholar 

  • Moreira PR, Duez C, Dehareng D, Antunes A, Almeida-Vara E, Frère JM, Malcata FX, Duarte J (2005) Molecular characterisation of a versatile peroxidase from a Bjerkandera strain. J Biotechnol 118(4):339–352

    Article  PubMed  CAS  Google Scholar 

  • Morillo JA, Antizar-Ladislao B, Monteoliva-Sanchez M, Ramos-Cormenzana A, Russell NJ (2009) Bioremediation and biovalorisation of olive-mill wastes. Appl Microbiol Biotechnol 82(1):25–39

    Article  PubMed  CAS  Google Scholar 

  • Mosier N, Wyman C, Dale B, Elander R, Lee YY, Holtzapple M, Ladisch M (2005) Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol 96(6):673–686

    Article  CAS  PubMed  Google Scholar 

  • Moumen A, Yáñez-Ruiz DR, Martín-García I, Molina-Alcaide E (2008) Fermentation characteristics and microbial growth promoted by diets including two-phase olive cake in continuous fermenters. J Anim Physiol Anim Nutr 92(1):9–17

    CAS  Google Scholar 

  • Muñoz C, Guillén F, Martínez AT, Martínez MJ (1997) Induction and characterization of laccase in the ligninolytic fungus Pleurotus eryngii. Curr Microbiol 34(1):1–5

    Article  PubMed  Google Scholar 

  • Nghi DH, Bittner B, Kellner H, Jehmlich N, Ullrich R, Pecyna MJ, Nousiainen P, Sipila J, Huong LM, Hofrichter M, Liers C (2012) The wood rot ascomycete Xylaria polymorpha produces a novel GH78 glycoside hydrolase that exhibits α-L-rhamnosidase and feruloyl esterase activities and releases hydroxycinnamic acids from lignocelluloses. Appl Environ Microbiol 78(14):4893–48901

    Article  PubMed Central  CAS  Google Scholar 

  • O’Sullivan AC (1997) Cellulose: the structure slowly unravels. Cellulose 4(3):173–207

    Article  Google Scholar 

  • Parati F, Altieri R, Esposito A, Lobianco A, Pepi M, Montesi L, Nair T (2011) Validation of thermal composting process using olive mill solid waste for industrial scale cultivation of Agaricus bisporus. Int Biodeterior Biodegrad 65(1):160–163

    Article  CAS  Google Scholar 

  • Polyakov KM, Fedorova TV, Stepanova EV, Cherkashin EA, Kurzeev SA, Strokopytov BV, Lamzin VS, Koroleva OV (2009) Structure of native laccase from Trametes hirsuta at 1.8 Å resolution. Acta Crystallogr Sect D: Struct Biol 65:611–617

    Article  CAS  Google Scholar 

  • Priego-Capote F, Ruiz-Jiménez J, Luque De Castro MD (2004) Fast separation and determination of phenolic compounds by capillary electrophoresis-diode array detection: application to the characterisation of alperujo after ultrasound-assisted extraction. J Chromatogr A 1045(1–2):239–246

    Article  PubMed  CAS  Google Scholar 

  • Ralph J, Lundquist K, Brunow G, Lu F, Kim H, Schatz PF, Marita JM, Hatfield RD, Ralph SA, Christensen JH, Boerjan W (2004) Lignins: natural polymers from oxidative coupling of 4-hydroxyphenyl-propanoids. Phytochem Rev 3:29–60

    Article  CAS  Google Scholar 

  • Reina R, Liers C, Ocampo JA, García-Romera I, Aranda E (2013) Solid state fermentation of olive mill residues by wood- and dung-dwelling Agaricomycetes: effects on peroxidase production, biomass development and phenol phytotoxicity. Chemosphere 93(7):6

    Article  CAS  Google Scholar 

  • Reina R, Kellner H, Jehmlich N, Ullrich R, García-Romera I, Aranda E, Liers C (2014) Differences in the secretion pattern of oxidoreductases from Bjerkandera adusta induced by a phenolic olive mill extract. Fungal Genet Biol 72:99–105

    Article  PubMed  CAS  Google Scholar 

  • Reina R, Ullrich R, García-Romera I, Liers C, Aranda E (2016) Integrated biovalorization of wine and olive mill by-products to produce enzymes of industrial interest and soil amendments. Span J Agric Res 14(3):0205

    Article  Google Scholar 

  • Reina R, Liers C, García-Romera I, Aranda E (2017) Enzymatic mechanisms and detoxification of dry olive-mill residue by Cyclocybe aegerita, Mycetinis alliaceus and Chondrostereum purpureum. Int Biodeterior Biodegrad 117:89–96

    Article  CAS  Google Scholar 

  • Roig A, Cayuela ML, Sánchez-Monedero MA (2006) An overview on olive mill wastes and their valorisation methods. Waste Manag 26(9):960–969

    Article  PubMed  CAS  Google Scholar 

  • Roselló-Soto E, Koubaa M, Moubarik A, Lopes RP, Saraiva JA, Boussetta N, Grimi N, Barba FJ (2015) Emerging opportunities for the effective valorization of wastes and by-products generated during olive oil production process: non-conventional methods for the recovery of high-added value compounds. Trends Food Sci Technol 45(2):296–310

    Article  CAS  Google Scholar 

  • Roy BP, Paice MG, Archibald FS, Misra SK, Misiak LE (1994) Creation of metal-complexing agents, reduction of manganese dioxide, and promotion of manganese peroxidase-mediated Mn(III) production by cellobiose: quinone oxidoreductase from Trametes versicolor. J Biol Chem 269(31):19745–19750

    PubMed  CAS  Google Scholar 

  • Rugolo M, Levin L, Lechner BE (2016) Flammulina velutipes: an option for “alperujo” use. Rev Iberoam Micol 33(4):242–247

    Article  PubMed  Google Scholar 

  • Ruiz-Dueñas F, Camarero S, Perez-Boada M, Martínez M, Martínez A (2001) A new versatile peroxidase from Pleurotus. Biochem Soc Trans 29(Pt 2):116–122

    Article  PubMed  Google Scholar 

  • Ruiz-Dueñas FJ, Morales M, Mate MJ, Romero A, Martínez MJ, Smith AT, Martínez AT (2008) Site-directed mutagenesis of the catalytic tryptophan environment in Pleurotus eryngii versatile peroxidase. Biochemistry 47(6):1685–1695

    Article  PubMed  CAS  Google Scholar 

  • Ruiz-Rodríguez A, Polonia I, Soler-Rivas C, Wichers HJ (2011) Ligninolytic enzymes activities of Oyster mushrooms cultivated on OMW (olive mill waste) supplemented media, spawn and substrates. Int Biodeter Biodegr 65(2):285–293

    Article  CAS  Google Scholar 

  • Salgado JM, Moreira C, Abrunhosa L, Venâncio A, Domínguez JM, Belo I (2012) Evaluation of substrate composition for lignocellulolytic enzymes production by solid state fermentation of wastes from olive oil and wine industries. 1° CIAB Congreso Iberoamericano sobre Biorrefinerias

    Google Scholar 

  • Salgado JM, Abrunhosa L, Venancio A, Dominguez JM, Belo I (2014) Integrated use of residues from olive mill and winery for lipase production by solid state fermentation with Aspergillus sp. Appl Biochem Biotechnol 172(4):1832–1845

    Article  PubMed  CAS  Google Scholar 

  • Salvachúa D, Prieto A, Martínez ÁT, Martínez MJ (2013a) Characterization of a novel dye-decolorizing peroxidase (DyP)-type enzyme from Irpex lacteus and its application in enzymatic hydrolysis of wheat straw. Appl Environ Microbiol 79(14):4316–4324

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Salvachúa D, Prieto A, Mattinen ML, Tamminen T, Liitiä T, Lille M, Willför S, Martínez AT, Martínez MJ, Faulds CB (2013b) Versatile peroxidase as a valuable tool for generating new biomolecules by homogeneous and heterogeneous cross-linking. Enzym Microb Technol 52(6–7):303–311

    Article  CAS  Google Scholar 

  • Sampedro I, Aranda E, Martín J, García-Garrido JM, García-Romera I, Ocampo JA (2004a) Saprobic fungi decrease plant toxicity caused by olive mill residues. Appl Soil Ecol 26(2):149–156

    Article  Google Scholar 

  • Sampedro I, Romero C, Ocampo JA, Brenes M, García I (2004b) Removal of monomeric phenols in dry mill olive residue by saprobic fungi. J Agric Food Chem 52(14):4487–4492

    Article  PubMed  CAS  Google Scholar 

  • Sampedro I, D’Annibale A, Ocampo JA, Stazi SR, García-Romera I (2005) Bioconversion of olive-mill dry residue by Fusarium lateritium and subsequent impact on its phytotoxicity. Chemosphere 60(10):1393–1400

    Article  PubMed  CAS  Google Scholar 

  • Sampedro I, D’Annibale A, Ocampo JA, Stazi SR, García-Romera I (2007a) Solid-state cultures of Fusarium oxysporum transform aromatic components of olive-mill dry residue and reduce its phytotoxicity. Bioresour Technol 98(18):3547–3554

    Article  PubMed  CAS  Google Scholar 

  • Sampedro I, Marinari S, D’Annibale A, Grego S, Ocampo JA, García-Romera I (2007b) Organic matter evolution and partial detoxification in two-phase olive mill waste colonized by white-rot fungi. Int Biodeter Biodegr 60(2):116–125

    Article  CAS  Google Scholar 

  • Sampedro I, Aranda E, Díaz R, García-Sanchez M, Ocampo JA, García-Romera I (2008) Saprobe fungi decreased the sensitivity to the toxic effect of dry olive mill residue on arbuscular mycorrhizal plants. Chemosphere 70(8):1383–1389

    Article  PubMed  CAS  Google Scholar 

  • Sampedro I, Cajthaml T, Marinari S, Stazi SR, Grego S, Petruccioli M, Federici F, D’Annibale A (2009) Immobilized inocula of white-rot fungi accelerate both detoxification and organic matter transformation in two-phase dry olive-mill residue. J Agric Food Chem 57(12):5452–5460

    Article  PubMed  CAS  Google Scholar 

  • Sampedro I, D’Annibale A, Federici F, Romera IG, Siles JA, Petruccioli M (2012) Non-supplemented aqueous extract from dry olive mill residue: a possible medium for fungal manganese peroxidase production. Biochem Eng J 65:96–99

    Article  CAS  Google Scholar 

  • Sánchez C (2009) Lignocellulosic residues: biodegradation and bioconversion by fungi. Biotechnol Adv 27(2):185–194

    Article  PubMed  CAS  Google Scholar 

  • Saparrat MCN, Jurado M, Díaz R, Romera IG, Martínez MJ (2010) Transformation of the water soluble fraction from “alpeorujo” by Coriolopsis rigida: the role of laccase in the process and its impact on Azospirillum brasiliense survival. Chemosphere 78(1):72–76

    Article  PubMed  CAS  Google Scholar 

  • Scheibner M, Hülsdau B, Zelena K, Nimtz M, de Boer L, Berger R, Zorn H (2008) Novel peroxidases of Marasmius scorodonius degrade β-carotene. Appl Microbiol Biotechnol 77(6):1241–1250

    Article  PubMed  CAS  Google Scholar 

  • Siles JA, Cajthaml T, Hernández P, Pérez-Mendoza D, García-Romera I, Sampedro I (2015) Shifts in soil chemical properties and bacterial communities responding to biotransformed dry olive residue used as organic amendment. Microb Ecol 70(1):231–243

    Article  PubMed  Google Scholar 

  • Sugiura M, Hirai H, Nishida T (2003) Purification and characterization of a novel lignin peroxidase from white-rot fungus Phanerochaete sordida YK-624. FEMS Microbiol Lett 224(2):285–290

    Article  PubMed  CAS  Google Scholar 

  • Sun J, Tian C, Diamond S, Glass NL (2012) Deciphering transcriptional regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa. Eukaryot Cell 11(4):482–493

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Sun S, Sun S, Cao X, Sun R (2016) The role of pretreatment in improving the enzymatic hydrolysis of lignocellulosic materials. Bioresour Technol 199:49–58

    Article  PubMed  CAS  Google Scholar 

  • Sygmund C, Santner P, Krondorfer I, Peterbauer CK, Alcalde M, Nyanhongo GS, Guebitz GM, Ludwig R (2013) Semi-rational engineering of cellobiose dehydrogenase for improved hydrogen peroxide production. Microb Cell Factories 12:38

    Article  CAS  Google Scholar 

  • Tani S, Kawaguchi T, Kobayashi T (2014) Complex regulation of hydrolytic enzyme genes for cellulosic biomass degradation in filamentous fungi. Appl Microbiol Biotechnol 98(11):4829–4837

    Article  PubMed  CAS  Google Scholar 

  • Teeri TT, Reinikainen T, Ruohonen L, Jones TA, Knowles JKC (1992) Domain function in Trichoderma reesei cellobiohydrolases. J Biotechnol 24(2):169–176

    Article  CAS  Google Scholar 

  • Tortosa G, Alburquerque JA, Ait-Baddi G, Cegarra J (2012) The production of commercial organic amendments and fertilisers by composting of two-phase olive mill waste (“alperujo”). J Clean Prod 26:48–55

    Article  CAS  Google Scholar 

  • Ullrich R, Nüske J, Scheibner K, Spantzel J, Hofrichter M (2004) Novel haloperoxidase from the agaric basidiomycete Agrocybe aegerita oxidizes aryl alcohols and aldehydes. Appl Environ Microbiol 70(8):4575–4581

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Ullrich R, Dung NL, Hofrichter M (2005) Laccase from the medicinal mushroom Agaricus blazei: production, purification and characterization. Appl Microbiol Biotechnol 67(3):357–363

    Article  PubMed  CAS  Google Scholar 

  • Valadares F, Gonçalves TA, Gonçalves DSPO, Segato F, Romanel E, Milagres AMF, Squina FM, Ferraz A (2016) Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification. Biotechnol Biofuels 9(1):110

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Van Den Brink J, De Vries RP (2011) Fungal enzyme sets for plant polysaccharide degradation. Appl Microbiol Biotechnol 91(6):1477–1492

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Várnai A, Mäkelä MR, Djajadi DT, Rahikainen J, Hatakka A, Viikari L (2014) Carbohydrate-binding modules of fungal cellulases. Occurrence in nature, function, and relevance in industrial biomass conversion. Adv Appl Microbiol 88:103–165

    Article  PubMed  CAS  Google Scholar 

  • Wymelenberg AV, Gaskell J, Mozuch M, Kersten P, Sabat G, Martínez D, Cullen D (2009) Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression. Appl Environ Microbiol 75(12):4058–4068

    Article  CAS  Google Scholar 

  • Yang F, Jensen JD, Svensson B, Jorgensen HJ, Collinge DB, Finnie C (2012) Secretomics identifies Fusarium graminearum proteins involved in the interaction with barley and wheat. Mol Plant Pathol 13(5):445–453

    Article  PubMed  CAS  Google Scholar 

  • Yaver DS, Xu F, Golightly EJ, Brown KM, Brown SH, Rey MW, Schneider P, Halkier T, Mondorf K, Dalbøge H (1996) Purification, characterization, molecular cloning, and expression of two laccase genes from the white rot basidiomycete Trametes villosa. Appl Environ Microbiol 62(3):834–841

    PubMed  PubMed Central  CAS  Google Scholar 

  • Yoshida T, Tsuge H, Hisabori T, Sugano Y (2012) Crystal structures of dye-decolorizing peroxidase with ascorbic acid and 2, 6-dimethoxyphenol. FEBS Lett 586(24):4351–4356

    Article  PubMed  CAS  Google Scholar 

  • Yu W, Liu W, Huang H, Zheng F, Wang X, Wu Y, Li K, Xie X, Jin Y (2014) Application of a novel alkali-tolerant thermostable DyP-type peroxidase from Saccharomonospora viridis DSM 43017 in biobleaching of eucalyptus kraft pulp. PloS One 9(10):e110319

    Article  PubMed  PubMed Central  CAS  Google Scholar 

Download references

Acknowledgements

EA thanks the Ministry of Economy and Competitiveness (MINECO) and FEDER funds for co-funding the Ramón y Cajal contract (RYC-2013-12481). We also wish to thank Bart Mellebeek for proofreading the document.

Author information

Authors and Affiliations

  1. Department of Soil Microbiology and Symbiotic Systems, Consejo Superior de Investigaciones Científicas (CSIC), Estación Experimental del Zaidín (EEZ), Granada, Spain

    Rocío Reina & Inmaculada García-Romera

  2. UMR Eco&sols. Ecologie fonctionnelle & Biogéochimie des soils & Agro-écosystèmes, Montpellier Cedex 2, France

    Mercedes García-Sánchez

  3. Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Suchdol, Czech Republic

    Mercedes García-Sánchez

  4. Department of Bio and Environmental Sciences, Dresden University of Technology, International Institute Zittau, Zittau, Germany

    Christiane Liers

  5. Department of Microbiology, University of Granada, Institute of Water Research, Granada, Spain

    Elisabet Aranda

Authors
  1. Rocío Reina
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Mercedes García-Sánchez
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Christiane Liers
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Inmaculada García-Romera
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Elisabet Aranda
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Elisabet Aranda .

Editor information

Editors and Affiliations

  1. School of Environmental Science and Engineering, Sun Yat-Sen University, Guangzhou, China

    Ram Prasad

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer International Publishing AG, part of Springer Nature

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Reina, R., García-Sánchez, M., Liers, C., García-Romera, I., Aranda, E. (2018). An Overview of Fungal Applications in the Valorization of Lignocellulosic Agricultural By-Products: The Case of Two-Phase Olive Mill Wastes. In: Prasad, R. (eds) Mycoremediation and Environmental Sustainability. Fungal Biology. Springer, Cham. https://doi.org/10.1007/978-3-319-77386-5_8

Download citation

Publish with us

Policies and ethics

Search

Navigation